-
2
-
-
77954601328
-
Measurement and clinical monitoring of human lymphocyte clonality by massively parallel v-d-j pyrosequencing
-
Boyd, S.D., Marshall, E.L., Merker, J.D., Maniar, J.M., Zhang, L.N., Sahaf, B., Jones, C.D., Simen, B.B., Hanczaruk, B., Nguyen, K.D., Nadeau, K.C., Egholm, M., Miklos, D.B., Zehnder, J.L., Fire, A.Z.: Measurement and clinical monitoring of human lymphocyte clonality by massively parallel v-d-j pyrosequencing. Science Translational Medicine 1(12), 12-23 (2009)
-
(2009)
Science Translational Medicine
, vol.1
, Issue.12
, pp. 12-23
-
-
Boyd, S.D.1
Marshall, E.L.2
Merker, J.D.3
Maniar, J.M.4
Zhang, L.N.5
Sahaf, B.6
Jones, C.D.7
Simen, B.B.8
Hanczaruk, B.9
Nguyen, K.D.10
Nadeau, K.C.11
Egholm, M.12
Miklos, D.B.13
Zehnder, J.L.14
Fire, A.Z.15
-
3
-
-
0000732463
-
A limited memory algorithm for bound constrained optimization
-
Byrd, R.H., Lu, P., Nocedal, J., Zhu, C.: A limited memory algorithm for bound constrained optimization. SIAM J. Sci. Comput. 16(5), 1190-1208 (1995)
-
(1995)
SIAM J. Sci. Comput.
, vol.16
, Issue.5
, pp. 1190-1208
-
-
Byrd, R.H.1
Lu, P.2
Nocedal, J.3
Zhu, C.4
-
4
-
-
0141496132
-
Ultraconservative online algorithms for multiclass problems
-
Crammer, K., Singer, Y.: Ultraconservative online algorithms for multiclass problems. J. Mach. Learn. Res. 3, 951-991 (2003)
-
(2003)
J. Mach. Learn. Res.
, vol.3
, pp. 951-991
-
-
Crammer, K.1
Singer, Y.2
-
5
-
-
77957244650
-
Search and clustering orders of magnitude faster than blast
-
Edgar, R.C.: Search and clustering orders of magnitude faster than blast. Bioinformatics 26(19), 2460-2461 (2010)
-
(2010)
Bioinformatics
, vol.26
, Issue.19
, pp. 2460-2461
-
-
Edgar, R.C.1
-
6
-
-
0029031724
-
Organization of the human immunoglobulin lambda light-chain locus on chromosome 22q11.2
-
Fippiat, J.-P., Williams, S.C., Tomlinson, L.M., Cook, G.P., Cherif, D., Le Paslier, D., Collins, J.E., Dunham, l., Winter, G., Lefranc, M.-P.: Organization of the human immunoglobulin lambda light-chain locus on chromosome 22q11.2. Human Molecular Genetics 4(6), 983-991 (1995)
-
(1995)
Human Molecular Genetics
, vol.4
, Issue.6
, pp. 983-991
-
-
Fippiat, J.-P.1
Williams, S.C.2
Tomlinson, L.M.3
Cook, G.P.4
Cherif, D.5
Le Paslier, D.6
Collins, J.E.7
Dunham, L.8
Winter, G.9
Lefranc, M.-P.10
-
7
-
-
34547840205
-
Ihmmune-align: Hiddenmarkovmodel-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences
-
Gata, B.A., Malming, H.R., Jackson, K.J.L., Bain, M.E., Wilson, P., Collins, A.M.: ihmmune-align: hiddenmarkovmodel-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences. Bioinformatics 23(13), 1580-1587 (2007)
-
(2007)
Bioinformatics
, vol.23
, Issue.13
, pp. 1580-1587
-
-
Gata, B.A.1
Malming, H.R.2
Jackson, K.J.L.3
Bain, M.E.4
Wilson, P.5
Collins, A.M.6
-
8
-
-
3242876679
-
IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor VJ and VD J rearrangement analysis
-
Giudicelli, V., Chaume, D., Lefranc, M.-P.: IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor VJ and VD J rearrangement analysis. Nucleic Acids Research 32(suppl. 2), W435-W440 (2004)
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.SUPPL. 2
-
-
Giudicelli, V.1
Chaume, D.2
Lefranc, M.-P.3
-
9
-
-
79951763951
-
Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset
-
Jackson, K.J.L., Boyd, S., Gaëta, B.A., Collins, A.M.: Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset. Bioinformatics 26(24), 3129-3130 (2010)
-
(2010)
Bioinformatics
, vol.26
, Issue.24
, pp. 3129-3130
-
-
Jackson, K.J.L.1
Boyd, S.2
Gaëta, B.A.3
Collins, A.M.4
-
10
-
-
33646181086
-
Mechanism and control of v(d)j recombination at the immunoglobulin heavy chain locus
-
Jung, D., Giallourakis, C., Mostoslavsky, R., Alt, F.W.: Mechanism and control of v(d)j recombination at the immunoglobulin heavy chain locus. Annual Review of Immunology 24(1), 541-570 (2006)
-
(2006)
Annual Review of Immunology
, vol.24
, Issue.1
, pp. 541-570
-
-
Jung, D.1
Giallourakis, C.2
Mostoslavsky, R.3
Alt, F.W.4
-
12
-
-
0142192295
-
Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data
-
Morgan Kaufmann, San Francisco
-
Lafferty, J., Mccallum, A., Pereira, F.: Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data. In: Proc. 18th International Conf. on Machine Learning, pp. 282-289. Morgan Kaufmann, San Francisco (2001)
-
(2001)
Proc. 18th International Conf. on Machine Learning
, pp. 282-289
-
-
Lafferty, J.1
Mccallum, A.2
Pereira, F.3
-
13
-
-
0036823113
-
Imgt, the international immunogenetics database: A high-quality information system for comparative immunogenetics and immunology
-
Lefranc, M.-P.: Imgt, the international immunogenetics database: a high-quality information system for comparative immunogenetics and immunology. Developmental &; Comparative Immunology 26(8), 697-705 (2002)
-
(2002)
Developmental &; Comparative Immunology
, vol.26
, Issue.8
, pp. 697-705
-
-
Lefranc, M.-P.1
-
14
-
-
34047104592
-
Protein protein interaction site prediction based on conditional random fields
-
Li, M.-H., Lin, L., Wang, X.-L., Liu, T.: Protein protein interaction site prediction based on conditional random fields. Bioinformatics 23(5), 597-604 (2007)
-
(2007)
Bioinformatics
, vol.23
, Issue.5
, pp. 597-604
-
-
Li, M.-H.1
Lin, L.2
Wang, X.-L.3
Liu, T.4
-
15
-
-
0023650302
-
Physical map of the human immunoglobulin k locus and its implications for the mechanisms of vkjk rearrangement
-
Lorenz, W., Straubinger, B., Zachau, H.G.: Physical map of the human immunoglobulin k locus and its implications for the mechanisms of vkjk rearrangement. Nucleic Acids Research 15(23), 9667-9676 (1987)
-
(1987)
Nucleic Acids Research
, vol.15
, Issue.23
, pp. 9667-9676
-
-
Lorenz, W.1
Straubinger, B.2
Zachau, H.G.3
-
17
-
-
77951949737
-
SoDA2: A Hidden Markov Model approach for identification of immunoglobulin rearrangements
-
Munshaw, S., Kepler, T.B.: SoDA2: a Hidden Markov Model approach for identification of immunoglobulin rearrangements. Bioinformatics 26(7), 867-872 (2010)
-
(2010)
Bioinformatics
, vol.26
, Issue.7
, pp. 867-872
-
-
Munshaw, S.1
Kepler, T.B.2
-
18
-
-
39749182247
-
Antibody diversification by somatic mutation: From burnet onwards
-
Neuberger, M.S.: Antibody diversification by somatic mutation: from burnet onwards. Immunolo. Cell Biol. 86, 124-132 (2008)
-
(2008)
Immunolo. Cell Biol.
, vol.86
, pp. 124-132
-
-
Neuberger, M.S.1
-
19
-
-
54949137701
-
MetaSim A Sequencing Simulator for Genomics and Metagenomics
-
Richter, D.C., Ott, F., Auch, A.F., Schmid, R., Huson, D.H.: MetaSim A Sequencing Simulator for Genomics and Metagenomics. PLoS ONE 3(10), e3373+ (2008)
-
(2008)
PLoS ONE
, vol.3
, Issue.10
-
-
Richter, D.C.1
Ott, F.2
Auch, A.F.3
Schmid, R.4
Huson, D.H.5
-
20
-
-
2442717677
-
Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER
-
Baltimore, Md.
-
Souto-Carneiro, M.M., Longo, N.S., Russ, D.E., Sun, H.-W.W., Lipsky, P.E.: Characterization of the human Ig heavy chain antigen binding complementarity determining region 3 using a newly developed software algorithm, JOINSOLVER.. Journal of immunology (Baltimore, Md.: 1950) 172(11), 6790-6802 (2004)
-
(1950)
Journal of Immunology
, vol.172
, Issue.11
, pp. 6790-6802
-
-
Souto-Carneiro, M.M.1
Longo, N.S.2
Russ, D.E.3
Sun, H.-W.W.4
Lipsky, P.E.5
-
21
-
-
32544437698
-
Soda: Implementation of a 3d alignment algorithm for inference of antigen receptor recombinations
-
Volpe, J.M., Cowell, L.G., Kepler, T.B.: Soda: implementation of a 3d alignment algorithm for inference of antigen receptor recombinations. Bioinformatics 22(4), 438-444 (2006)
-
(2006)
Bioinformatics
, vol.22
, Issue.4
, pp. 438-444
-
-
Volpe, J.M.1
Cowell, L.G.2
Kepler, T.B.3
|