-
1
-
-
0037245913
-
Bind: The biomolecular interaction network database
-
G. Bader, D. Betel, and C. Hogue, "Bind: the biomolecular interaction network database," Nucleic acids research, vol. 31, no. 1, pp. 248-250, 2003.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.1
, pp. 248-250
-
-
Bader, G.1
Betel, D.2
Hogue, C.3
-
2
-
-
0033971642
-
Dip: The database of interacting proteins
-
I. Xenarios, D. Rice, L. Salwinski, M. Baron, E. Marcotte, and D. Eisenberg, "Dip: the database of interacting proteins," Nucleic acids research, vol. 28, no. 1, pp. 289-291, 2000.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 289-291
-
-
Xenarios, I.1
Rice, D.2
Salwinski, L.3
Baron, M.4
Marcotte, E.5
Eisenberg, D.6
-
3
-
-
9144248312
-
Intact: An open source molecular interaction database
-
H. Hermjakob, L. Montecchi-Palazzi, C. Lewington, S. Mudali, S. Kerrien, S. Orchard, M. Vingron, B. Roechert, P. Roepstorff, A. Valencia et al., "Intact: an open source molecular interaction database," Nucleic acids research, vol. 32, no. suppl 1, pp. D452-D455, 2004.
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.SUPPL. 1
-
-
Hermjakob, H.1
Montecchi-Palazzi, L.2
Lewington, C.3
Mudali, S.4
Kerrien, S.5
Orchard, S.6
Vingron, M.7
Roechert, B.8
Roepstorff, P.9
Valencia, A.10
-
4
-
-
33644873184
-
Biogrid: A general repository for interaction datasets
-
C. Stark, B. Breitkreutz, T. Reguly, L. Boucher, A. Breitkreutz, and M. Tyers, "Biogrid: a general repository for interaction datasets," Nucleic acids research, vol. 34, no. suppl 1, pp. D535-D539, 2006.
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.SUPPL. 1
-
-
Stark, C.1
Breitkreutz, B.2
Reguly, T.3
Boucher, L.4
Breitkreutz, A.5
Tyers, M.6
-
5
-
-
0037138406
-
Mint: A molecular interaction database
-
A. Zanzoni, L. Montecchi-Palazzi, M. Quondam, G. Ausiello, M. Helmer-Citterich, and G. Cesareni, "Mint: a molecular interaction database," FEBS letters, vol. 513, no. 1, pp. 135-140, 2002.
-
(2002)
FEBS Letters
, vol.513
, Issue.1
, pp. 135-140
-
-
Zanzoni, A.1
Montecchi-Palazzi, L.2
Quondam, M.3
Ausiello, G.4
Helmer-Citterich, M.5
Cesareni, G.6
-
6
-
-
33644878150
-
Mpact: The mips protein interaction resource on yeast
-
U. Güldener, M. Münsterkötter, M. Oesterheld, P. Pagel, A. Ruepp, H. Mewes, and V. Stümpflen, "Mpact: the mips protein interaction resource on yeast," Nucleic acids research, vol. 34, no. suppl 1, pp. D436-D441, 2006.
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.SUPPL. 1
-
-
Güldener, U.1
Münsterkötter, M.2
Oesterheld, M.3
Pagel, P.4
Ruepp, A.5
Mewes, H.6
Stümpflen, V.7
-
7
-
-
0032919364
-
Kegg: Kyoto encyclopedia of genes and genomes
-
H. Ogata, S. Goto, K. Sato, W. Fujibuchi, H. Bono, and M. Kanehisa, "Kegg: Kyoto encyclopedia of genes and genomes," Nucleic acids research, vol. 27, no. 1, p. 29, 1999.
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.1
, pp. 29
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
8
-
-
33644656793
-
Systematic identification of functional orthologs based on protein network comparison
-
S. Bandyopadhyay, R. Sharan, and T. Ideker, "Systematic identification of functional orthologs based on protein network comparison," Genome research, vol. 16, no. 3, pp. 428-435, 2006.
-
(2006)
Genome Research
, vol.16
, Issue.3
, pp. 428-435
-
-
Bandyopadhyay, S.1
Sharan, R.2
Ideker, T.3
-
9
-
-
34547416529
-
Pairwise global alignment of protein interaction networks by matching neighborhood topology
-
Springer
-
R. Singh, J. Xu, and B. Berger, "Pairwise global alignment of protein interaction networks by matching neighborhood topology," in Research in computational molecular biology. Springer, 2007, pp. 16-31.
-
(2007)
Research in Computational Molecular Biology
, pp. 16-31
-
-
Singh, R.1
Xu, J.2
Berger, B.3
-
10
-
-
51349087811
-
Global alignment of multiple protein interaction networks with application to functional orthology detection
-
-, "Global alignment of multiple protein interaction networks with application to functional orthology detection," Proceedings of the National Academy of Sciences, vol. 105, no. 35, pp. 12 763-12 768, 2008.
-
(2008)
Proceedings of the National Academy of Sciences
, vol.105
, Issue.35
, pp. 12763-12768
-
-
Singh, R.1
Xu, J.2
Berger, B.3
-
11
-
-
66349108229
-
Isorankn: Spectral methods for global alignment of multiple protein networks
-
C. Liao, K. Lu, M. Baym, R. Singh, and B. Berger, "Isorankn: spectral methods for global alignment of multiple protein networks," Bioinformatics, vol. 25, no. 12, pp. i253-i258, 2009.
-
(2009)
Bioinformatics
, vol.25
, Issue.12
-
-
Liao, C.1
Lu, K.2
Baym, M.3
Singh, R.4
Berger, B.5
-
12
-
-
33748257786
-
Græmlin: General and robust alignment of multiple large interaction networks
-
J. Flannick, A. Novak, B. Srinivasan, H. McAdams, and S. Batzoglou, "Græmlin: general and robust alignment of multiple large interaction networks," Genome research, vol. 16, no. 9, pp. 1169-1181, 2006.
-
(2006)
Genome Research
, vol.16
, Issue.9
, pp. 1169-1181
-
-
Flannick, J.1
Novak, A.2
Srinivasan, B.3
McAdams, H.4
Batzoglou, S.5
-
13
-
-
79955751671
-
Integrative network alignment reveals large regions of global network similarity in yeast and human
-
O. Kuchaiev and N. Pržulj, "Integrative network alignment reveals large regions of global network similarity in yeast and human," Bioinformatics, vol. 27, no. 10, p. 1390, 2011.
-
(2011)
Bioinformatics
, vol.27
, Issue.10
, pp. 1390
-
-
Kuchaiev, O.1
Pržulj, N.2
-
14
-
-
80755144078
-
An efficient network querying method based on conditional random fields
-
Q. Huang, L. Wu, and X. Zhang, "An efficient network querying method based on conditional random fields," Bioinformatics, vol. 27, no. 22, pp. 3173-3178, 2011.
-
(2011)
Bioinformatics
, vol.27
, Issue.22
, pp. 3173-3178
-
-
Huang, Q.1
Wu, L.2
Zhang, X.3
-
15
-
-
0346801873
-
The gene ontology (go) database and informatics resource
-
M. Harris, J. Clark, A. Ireland, J. Lomax, M. Ashburner, R. Foulger, K. Eilbeck, S. Lewis, B. Marshall, C. Mungall et al., "The gene ontology (go) database and informatics resource," Nucleic acids research, vol. 32, no. Database issue, p. D258, 2004.
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.DATABASE ISSUE
-
-
Harris, M.1
Clark, J.2
Ireland, A.3
Lomax, J.4
Ashburner, M.5
Foulger, R.6
Eilbeck, K.7
Lewis, S.8
Marshall, B.9
Mungall, C.10
-
16
-
-
0025183708
-
Basic local alignment search tool
-
S. Altschul, W. Gish, W. Miller, E. Myers, and D. Lipman, "Basic local alignment search tool," Journal of molecular biology, vol. 215, no. 3, pp. 403-410, 1990.
-
(1990)
Journal of Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.5
-
17
-
-
34147121646
-
Toward a comprehensive atlas of the physical interactome of saccharomyces cerevisiae
-
S. Collins, P. Kemmeren, X. Zhao, J. Greenblatt, F. Spencer, F. Holstege, J. Weissman, and N. Krogan, "Toward a comprehensive atlas of the physical interactome of saccharomyces cerevisiae," Molecular & Cellular Proteomics, vol. 6, no. 3, pp. 439-450, 2007.
-
(2007)
Molecular & Cellular Proteomics
, vol.6
, Issue.3
, pp. 439-450
-
-
Collins, S.1
Kemmeren, P.2
Zhao, X.3
Greenblatt, J.4
Spencer, F.5
Holstege, F.6
Weissman, J.7
Krogan, N.8
-
18
-
-
47349128648
-
An integrated approach to inferring gene-disease associations in humans
-
P. Radivojac, K. Peng, W. Clark, B. Peters, A. Mohan, S. Boyle, and S. Mooney, "An integrated approach to inferring gene-disease associations in humans," Proteins: Structure, Function, and Bioinformatics, vol. 72, no. 3, pp. 1030-1037, 2008.
-
(2008)
Proteins: Structure, Function, and Bioinformatics
, vol.72
, Issue.3
, pp. 1030-1037
-
-
Radivojac, P.1
Peng, K.2
Clark, W.3
Peters, B.4
Mohan, A.5
Boyle, S.6
Mooney, S.7
-
19
-
-
84858588614
-
Saccharomyces genome database: The genomics resource of budding yeast
-
J. Cherry, E. Hong, C. Amundsen, R. Balakrishnan, G. Binkley, E. Chan, K. Christie, M. Costanzo, S. Dwight, S. Engel et al., "Saccharomyces genome database: the genomics resource of budding yeast," Nucleic Acids Research, vol. 40, no. D1, pp. D700-D705, 2012.
-
(2012)
Nucleic Acids Research
, vol.40
, Issue.D1
-
-
Cherry, J.1
Hong, E.2
Amundsen, C.3
Balakrishnan, R.4
Binkley, G.5
Chan, E.6
Christie, K.7
Costanzo, M.8
Dwight, S.9
Engel, S.10
-
20
-
-
38549161592
-
A proteome-wide protein interaction map for campylobacter jejuni
-
J. Parrish, J. Yu, G. Liu, J. Hines, J. Chan, B. Mangiola, H. Zhang, S. Pacifico, F. Fotouhi, V. DiRita et al., "A proteome-wide protein interaction map for campylobacter jejuni," Genome biology, vol. 8, no. 7, p. R130, 2007.
-
(2007)
Genome Biology
, vol.8
, Issue.7
-
-
Parrish, J.1
Yu, J.2
Liu, G.3
Hines, J.4
Chan, J.5
Mangiola, B.6
Zhang, H.7
Pacifico, S.8
Fotouhi, F.9
DiRita, V.10
-
21
-
-
73549083239
-
The modular organization of protein interactions in escherichia coli
-
J. Peregrín-Alvarez, X. Xiong, C. Su, and J. Parkinson, "The modular organization of protein interactions in escherichia coli," PLoS computational biology, vol. 5, no. 10, p. e1000523, 2009.
-
(2009)
PLoS Computational Biology
, vol.5
, Issue.10
-
-
Peregrín-Alvarez, J.1
Xiong, X.2
Su, C.3
Parkinson, J.4
-
22
-
-
84860833500
-
Reorganizing the protein space at the universal protein resource (uniprot)
-
U. Consortium et al., "Reorganizing the protein space at the universal protein resource (uniprot)," Nucleic Acids Res, vol. 40, pp. D71-D75, 2012.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Consortium, U.1
-
23
-
-
73549094892
-
A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium mesorhizobium loti
-
Y. Shimoda, S. Shinpo, M. Kohara, Y. Nakamura, S. Tabata, and S. Sato, "A large scale analysis of protein-protein interactions in the nitrogen-fixing bacterium mesorhizobium loti," DNA research, vol. 15, no. 1, pp. 13-23, 2008.
-
(2008)
DNA Research
, vol.15
, Issue.1
, pp. 13-23
-
-
Shimoda, Y.1
Shinpo, S.2
Kohara, M.3
Nakamura, Y.4
Tabata, S.5
Sato, S.6
-
24
-
-
39749105401
-
A large-scale protein-protein interaction analysis in synechocystis sp. pcc6803
-
S. Sato, Y. Shimoda, A. Muraki, M. Kohara, Y. Nakamura, and S. Tabata, "A large-scale protein-protein interaction analysis in synechocystis sp. pcc6803," DNA research, vol. 14, no. 5, pp. 207-216, 2007.
-
(2007)
DNA Research
, vol.14
, Issue.5
, pp. 207-216
-
-
Sato, S.1
Shimoda, Y.2
Muraki, A.3
Kohara, M.4
Nakamura, Y.5
Tabata, S.6
|