메뉴 건너뛰기




Volumn 194, Issue 21, 2012, Pages 5963-5964

Next-generation sequencing and de novo assembly, genome organization, and comparative genomic analyses of the genomes of two helicobacter pylori isolates from duodenal ulcer patients in India

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATE; COMPARATIVE GENOMIC HYBRIDIZATION; DUODENUM ULCER; GENE SEQUENCE; GENOME ANALYSIS; GENOTYPE; HELICOBACTER PYLORI; HUMAN; INDIA; NOTE; PHYLOGENETIC TREE; PRIORITY JOURNAL;

EID: 84868610127     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.01371-12     Document Type: Note
Times cited : (15)

References (20)
  • 1
    • 80053982965 scopus 로고    scopus 로고
    • Coevolution and adaptation of Helicobacter pylori and the case for 'functional molecular infection epidemiology
    • Ahmed N. 2011. Coevolution and adaptation of Helicobacter pylori and the case for 'functional molecular infection epidemiology.' Med. Princ. Pract. 20:497-503.
    • (2011) Med. Princ. Pract. , vol.20 , pp. 497-503
    • Ahmed, N.1
  • 2
    • 67649159875 scopus 로고    scopus 로고
    • A flood of microbial genomes: do we need more?
    • doi:10.1371/journal.pone.0005831
    • Ahmed N. 2009. A flood of microbial genomes: do we need more? PLoS One 4:e5831. doi:10.1371/journal.pone.0005831.
    • (2009) PLoS One , vol.4
    • Ahmed, N.1
  • 3
    • 70349211747 scopus 로고    scopus 로고
    • Coadaptation of Helicobacter pylori and humans: ancient history, modern implications
    • Atherton JC, Blaser MJ. 2009. Coadaptation of Helicobacter pylori and humans: ancient history, modern implications. J. Clin. Invest. 119:2475-2487.
    • (2009) J. Clin. Invest. , vol.119 , pp. 2475-2487
    • Atherton, J.C.1    Blaser, M.J.2
  • 4
    • 79959354608 scopus 로고    scopus 로고
    • Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient
    • Avasthi TS, et al. 2011. Genomes of two chronological isolates (Helicobacter pylori 2017 and 2018) of the West African Helicobacter pylori strain 908 obtained from a single patient. J. Bacteriol. 193:3385-3386.
    • (2011) J. Bacteriol. , vol.193 , pp. 3385-3386
    • Avasthi, T.S.1
  • 5
    • 40549120596 scopus 로고    scopus 로고
    • The RAST server: rapid annotations using subsystems technology
    • doi:10.1186/1471-2164-9-75
    • Aziz RK, et al. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9:75. doi:10.1186/1471-2164-9-75.
    • (2008) BMC Genomics , vol.9 , pp. 75
    • Aziz, R.K.1
  • 7
    • 0033485517 scopus 로고    scopus 로고
    • Improved microbial gene identification with Glimmer
    • Delcher AL, et al. 1999. Improved microbial gene identification with Glimmer. Nucleic Acids Res. 27:4636-4641.
    • (1999) Nucleic Acids Res , vol.27 , pp. 4636-4641
    • Delcher, A.L.1
  • 8
    • 78649657389 scopus 로고    scopus 로고
    • Genome of Helicobacter pylori strain 908
    • Devi SH, et al. 2010. Genome of Helicobacter pylori strain 908. J. Bacteriol. 192:6488-6489.
    • (2010) J. Bacteriol. , vol.192 , pp. 6488-6489
    • Devi, S.H.1
  • 9
    • 34447647694 scopus 로고    scopus 로고
    • Ancestral European roots of Helicobacter pylori in India
    • doi:10.1186/1471-2164-8-184
    • Devi SM, et al. 2007. Ancestral European roots of Helicobacter pylori in India. BMC Genomics 8:184. doi:10.1186/1471-2164-8-184.
    • (2007) BMC Genomics , vol.8 , pp. 184
    • Devi, S.M.1
  • 10
    • 33748070795 scopus 로고    scopus 로고
    • Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a Western type cag-pathogenicity island
    • doi:10.1186/ 1471-2164-7-191
    • Devi SM, et al. 2006. Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a Western type cag-pathogenicity island. BMC Genomics 7:191. doi:10.1186/ 1471-2164-7-191.
    • (2006) BMC Genomics , vol.7 , pp. 191
    • Devi, S.M.1
  • 11
    • 0037423837 scopus 로고    scopus 로고
    • Traces of human migrations in Helicobacter pylori populations
    • Falush D, et al. 2003. Traces of human migrations in Helicobacter pylori populations. Science 299:1582-1585.
    • (2003) Science , vol.299 , pp. 1582-1585
    • Falush, D.1
  • 12
    • 0036226603 scopus 로고    scopus 로고
    • BLAT: the BLAST-like alignment tool
    • Kent WJ. 2002. BLAT: the BLAST-like alignment tool. Genome Res. 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 13
    • 78649729116 scopus 로고    scopus 로고
    • Helicobacter pylori from Peruvian Amerindians: traces of human migrations in strains from remote Amazon, and genome sequence of an Amerind strain
    • doi:10.1371/ journal.pone.0015076
    • Kersulyte D, et al. 2010. Helicobacter pylori from Peruvian Amerindians: traces of human migrations in strains from remote Amazon, and genome sequence of an Amerind strain. PLoS One 5:e15076. doi:10.1371/ journal.pone.0015076.
    • (2010) PLoS One , vol.5
    • Kersulyte, D.1
  • 14
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • doi:10.1186/gb-2004-5-2-r12
    • Kurtz S, et al. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5:R12. doi:10.1186/gb-2004-5-2-r12.
    • (2004) Genome Biol , vol.5
    • Kurtz, S.1
  • 15
    • 0642307369 scopus 로고    scopus 로고
    • EasyGene: a prokaryotic gene finder that ranks ORFs by statistical significance
    • doi:10.1186/ 1471-2105-4-21
    • Larsen TS, Krogh A. 2003. EasyGene: a prokaryotic gene finder that ranks ORFs by statistical significance. BMC Bioinformatics 4:21. doi:10.1186/ 1471-2105-4-21.
    • (2003) BMC Bioinformatics , vol.4 , pp. 21
    • Larsen, T.S.1    Krogh, A.2
  • 16
    • 33847201150 scopus 로고    scopus 로고
    • African origin for the intimate association between humans and Helicobacter pylori
    • Linz B, et al. 2007. An African origin for the intimate association between humans and Helicobacter pylori. Nature 445:915-918.
    • (2007) Nature , vol.445 , pp. 915-918
    • Linz, B.1
  • 18
    • 1842738286 scopus 로고    scopus 로고
    • Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: lessons from Ladakh
    • Wirth T, et al. 2004. Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: lessons from Ladakh. Proc. Natl. Acad. Sci. U. S. A. 101:4746-4751.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 4746-4751
    • Wirth, T.1
  • 19
    • 69249084966 scopus 로고    scopus 로고
    • Helicobacter pylori typing as a tool for tracking human migration
    • Yamaoka Y. 2009. Helicobacter pylori typing as a tool for tracking human migration. Clin. Microbiol. Infect. 15:829-834.
    • (2009) Clin. Microbiol. Infect. , vol.15 , pp. 829-834
    • Yamaoka, Y.1
  • 20
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.