-
1
-
-
0037423837
-
Traces of human migrations in Helicobacter pylori populations
-
10.1126/science.1080857 12624269
-
Falush D Wirth T Linz B Pritchard JK Stephens M Kidd M Blaser MJ Graham DY Vacher S Perez-Perez GI Yamaoka Y Mégraud F Otto K Reichard U Katzowitsch E Wang X Achtman M Suerbaum S Traces of human migrations in Helicobacter pylori populations Science 2003 299 1582-1585 10.1126/ science.1080857 12624269
-
(2003)
Science
, vol.299
, pp. 1582-1585
-
-
Falush, D.1
Wirth, T.2
Linz, B.3
Pritchard, J.K.4
Stephens, M.5
Kidd, M.6
Blaser, M.J.7
Graham, D.Y.8
Vacher, S.9
Perez-Perez, G.I.10
Yamaoka, Y.11
Mégraud, F.12
Otto, K.13
Reichard, U.14
Katzowitsch, E.15
Wang, X.16
Achtman, M.17
Suerbaum, S.18
-
2
-
-
31544451343
-
Deciphering host migrations and origins by means of their microbes
-
10.1111/j.1365-294X.2005.02687.x 16156803
-
Wirth T Meyer A Achtman M Deciphering host migrations and origins by means of their microbes Mol Ecol 2005 14 3289-3306 10.1111/ j.1365-294X.2005.02687.x 16156803
-
(2005)
Mol Ecol
, vol.14
, pp. 3289-3306
-
-
Wirth, T.1
Meyer, A.2
Achtman, M.3
-
3
-
-
33748070795
-
Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag-pathogenicity island
-
1553449 16872520 10.1186/1471-2164-7-191
-
Devi SM Ahmed I Khan AA Rahman SA Alvi A Sechi LA Ahmed N Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag-pathogenicity island BMC Genomics 2006 7 191 1553449 16872520 10.1186/1471-2164-7-191
-
(2006)
BMC Genomics
, vol.7
, pp. 191
-
-
Devi, S.M.1
Ahmed, I.2
Khan, A.A.3
Rahman, S.A.4
Alvi, A.5
Sechi, L.A.6
Ahmed, N.7
-
4
-
-
18144379109
-
Utility of JC polyomavirus in tracing the pattern of human migrations dating to prehistoric times
-
10.1099/vir.0.80650-0 15831942
-
Pavesi A Utility of JC polyomavirus in tracing the pattern of human migrations dating to prehistoric times J Gen Virol 2005 86 1315-1326 10.1099/vir.0.80650-0 15831942
-
(2005)
J Gen Virol
, vol.86
, pp. 1315-1326
-
-
Pavesi, A.1
-
5
-
-
1642362771
-
The phylogeography of human viruses
-
10.1046/j.1365-294X.2003.02051.x 15012753
-
Holmes EC The phylogeography of human viruses Mol Ecol 2004 13 745-756 10.1046/j.1365-294X.2003.02051.x 15012753
-
(2004)
Mol Ecol
, vol.13
, pp. 745-756
-
-
Holmes, E.C.1
-
6
-
-
33847201150
-
An African origin for the intimate association between humans and Helicobacter pylori
-
10.1038/nature05562 17287725
-
Linz B Balloux F Moodley Y Manica A Liu H Roumagnac P Falush D Stamer C Prugnolle F van der Merwe SW Yamaoka Y Graham DY Perez-Trallero E Wadstrom T Suerbaum S Achtman M An African origin for the intimate association between humans and Helicobacter pylori Nature 2007 445 915-918 10.1038/nature05562 17287725
-
(2007)
Nature
, vol.445
, pp. 915-918
-
-
Linz, B.1
Balloux, F.2
Moodley, Y.3
Manica, A.4
Liu, H.5
Roumagnac, P.6
Falush, D.7
Stamer, C.8
Prugnolle, F.9
van der Merwe, S.W.10
Yamaoka, Y.11
Graham, D.Y.12
Perez-Trallero, E.13
Wadstrom, T.14
Suerbaum, S.15
Achtman, M.16
-
7
-
-
0033591290
-
Helicobacter pylori virulence and genetic geography
-
10.1126/science.284.5418.1328 10334982
-
Covacci A Telford JL Giudice GD Parsonnet J Rappuoli R Helicobacter pylori virulence and genetic geography Science 1999 284 1328-1333 10.1126/science.284.5418.1328 10334982
-
(1999)
Science
, vol.284
, pp. 1328-1333
-
-
Covacci, A.1
Telford, J.L.2
Giudice, G.D.3
Parsonnet, J.4
Rappuoli, R.5
-
8
-
-
0035162295
-
Determination of Helicobacter pylori virulence by simple gene analysis of the cag pathogenicity island
-
10.1128/CDLI.8.1.181-186.2001
-
Ikenoue T Maeda S Gura KO Akanuma M Mitsuno Y Imai Y Yoshida H Shiratori Y Omata M Determination of Helicobacter pylori virulence by simple gene analysis of the cag pathogenicity island Clin Diag Lab Immunol 2001 8 181-186 10.1128/CDLI.8.1.181-186.2001
-
(2001)
Clin Diag Lab Immunol
, vol.8
, pp. 181-186
-
-
Ikenoue, T.1
Maeda, S.2
Gura, K.O.3
Akanuma, M.4
Mitsuno, Y.5
Imai, Y.6
Yoshida, H.7
Shiratori, Y.8
Omata, M.9
-
9
-
-
1542395706
-
Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates
-
10.1016/j.gene.2003.11.029 15019987
-
Blomstergren A Lundin A Nilsson C Engstrand L Lundeberg J Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates Gene 2004 328 85-93 10.1016/ j.gene.2003.11.029 15019987
-
(2004)
Gene
, vol.328
, pp. 85-93
-
-
Blomstergren, A.1
Lundin, A.2
Nilsson, C.3
Engstrand, L.4
Lundeberg, J.5
-
10
-
-
0032907038
-
Recombination and clonal groupings within Helicobacter pylori from different geographical regions
-
10.1046/j.1365-2958.1999.01382.x 10320570
-
Achtman M Azuma T Berg DE Ito Y Morelli G Pan ZJ Suerbaum S Thompson S van der Ende A van Doorn LJ Recombination and clonal groupings within Helicobacter pylori from different geographical regions Mol Microbiol 1999 32 459-470 10.1046/j.1365-2958.1999.01382.x 10320570
-
(1999)
Mol Microbiol
, vol.32
, pp. 459-470
-
-
Achtman, M.1
Azuma, T.2
Berg, D.E.3
Ito, Y.4
Morelli, G.5
Pan, Z.J.6
Suerbaum, S.7
Thompson, S.8
van der Ende, A.9
van Doorn, L.J.10
-
11
-
-
0041817568
-
Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
-
1462648 12930761
-
Falush D Stephens M Pritchard JK Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies Genetics 2003 164 1567-1587 1462648 12930761
-
(2003)
Genetics
, vol.164
, pp. 1567-1587
-
-
Falush, D.1
Stephens, M.2
Pritchard, J.K.3
-
12
-
-
1842738286
-
Distinguishing human ethnic groups by means of sequences from Helicobacter pylorL: Lessons from Ladakh
-
387319 15051885 10.1073/pnas.0306629101
-
Wirth T Wang X Linz B Novick RP Lum JK Blaser M Morelli G Falush D Achtman M Distinguishing human ethnic groups by means of sequences from Helicobacter pylori: Lessons from Ladakh Proc Natl Acad Sci USA 2004 101 4746-4751 387319 15051885 10.1073/pnas.0306629101
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 4746-4751
-
-
Wirth, T.1
Wang, X.2
Linz, B.3
Novick, R.P.4
Lum, J.K.5
Blaser, M.6
Morelli, G.7
Falush, D.8
Achtman, M.9
-
13
-
-
12944277033
-
Differences in genotypes of Helicobacter pylori from different human populations
-
94509 10809702 10.1128/JB.182.11.3210-3218.2000
-
Kersulyte D Mukhopadhyay AK Velapatino B Su WW Pan ZJ Garcia C Hernandez V Valdez Y Mistry RS Gilman RH Yuan Y Gao H Alarcon T Lopez-Brea M Nair GB Chowdhury A Datta S Shirai M Nakazawa T Ally R Segal I Wong BCY Lam SK Olfat F Boren T Engstrand L Torres O Schneider R Thomas JE Czinn S Berg DE Differences in genotypes of Helicobacter pylori from different human populations J Bacteriol 2000 182 3210-3218 94509 10809702 10.1128/ JB.182.11.3210-3218.2000
-
(2000)
J Bacteriol
, vol.182
, pp. 3210-3218
-
-
Kersulyte, D.1
Mukhopadhyay, A.K.2
Velapatino, B.3
Su, W.W.4
Pan, Z.J.5
Garcia, C.6
Hernandez, V.7
Valdez, Y.8
Mistry, R.S.9
Gilman, R.H.10
Yuan, Y.11
Gao, H.12
Alarcon, T.13
Lopez-Brea, M.14
Nair, G.B.15
Chowdhury, A.16
Datta, S.17
Shirai, M.18
Nakazawa, T.19
Ally, R.20
Segal, I.21
Wong, B.C.Y.22
Lam, S.K.23
Olfat, F.24
Boren, T.25
Engstrand, L.26
Torres, O.27
Schneider, R.28
Thomas, J.E.29
Czinn, S.30
Berg, D.E.31
more..
-
14
-
-
0037069444
-
East Asian genotypes of Helicobacter pylori strains in Amerindians provide evidence for its ancient human carriage
-
137551 12417749 10.1073/pnas.242574599
-
Ghose C Perez-Perez GI Bello MGD Pride DT Bravi CM Blaser MJ East Asian genotypes of Helicobacter pylori strains in Amerindians provide evidence for its ancient human carriage Proc Natl Acad Sci USA 2002 99 15107-15111 137551 12417749 10.1073/pnas.242574599
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 15107-15111
-
-
Ghose, C.1
Perez-Perez, G.I.2
Bello, M.G.D.3
Pride, D.T.4
Bravi, C.M.5
Blaser, M.J.6
-
15
-
-
0346848919
-
Fine-structure molecular typing of Irish Helicobacter pylori isolates and their genetic relatedness to strains from four different continents
-
308962 14662976 10.1128/JCM.41.12.5755-5759.2003
-
Carroll IM Ahmed N Beesley SM Khan AA Ghousunnissa S O'Morain CA Smyth CJ Fine-structure molecular typing of Irish Helicobacter pylori isolates and their genetic relatedness to strains from four different continents J Clin Microbiol 2003 41 5755-5759 308962 14662976 10.1128/ JCM.41.12.5755-5759.2003
-
(2003)
J Clin Microbiol
, vol.41
, pp. 5755-5759
-
-
Carroll, I.M.1
Ahmed, N.2
Beesley, S.M.3
Khan, A.A.4
Ghousunnissa, S.5
O'Morain, C.A.6
Smyth, C.J.7
-
16
-
-
0033001144
-
Geographic distribution of vacA allelic types of Helicobacter pylori
-
10.1016/S0016-5085(99)70065-X 10092304
-
Doorn VLJ Figueiredo C Mégraud F Pena S Midolo P Queiroz DM Carneiro F Vanderborght B Pegado MD Sanna R De Boer W Schneeberger PM Correa P Nq EK Atherton J Blaser MJ Quint WG Geographic distribution of vacA allelic types of Helicobacter pylori Gastroenterology 1999 116 823-830 10.1016/S0016-5085(99)70065-X 10092304
-
(1999)
Gastroenterology
, vol.116
, pp. 823-830
-
-
Doorn, V.L.J.1
Figueiredo, C.2
Mégraud, F.3
Pena, S.4
Midolo, P.5
Queiroz, D.M.6
Carneiro, F.7
Vanderborght, B.8
Pegado, M.D.9
Sanna, R.10
De Boer, W.11
Schneeberger, P.M.12
Correa, P.13
Nq, E.K.14
Atherton, J.15
Blaser, M.J.16
Quint, W.G.17
-
17
-
-
34249276425
-
Gain and loss of multiple genes during the evolution of Helicobacter pylori
-
1245399 16217547 10.1371/journal.pgen.0010043
-
Gressmann H Linz B Ghai R Pleissner KP Schlapbach R Yamaoka Y Kraft C Suerbaum S Meyer TF Achtman M Gain and loss of multiple genes during the evolution of Helicobacter pylori PLoS Genet 2005 1 4 e43 1245399 16217547 10.1371/journal.pgen.0010043
-
(2005)
PLoS Genet
, vol.1
, Issue.4
-
-
Gressmann, H.1
Linz, B.2
Ghai, R.3
Pleissner, K.P.4
Schlapbach, R.5
Yamaoka, Y.6
Kraft, C.7
Suerbaum, S.8
Meyer, T.F.9
Achtman, M.10
-
18
-
-
0033581946
-
Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages
-
10.1016/S0960-9822(00)80057-3 10574762
-
Kivisild T Bamshad MJ Kaldma K Metspalu M Metspalu E Reidla M Laos S Parik J Watkins WS Dixon ME Papiha SS Mastana SS Mir MR Ferak V Villems R Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages Curr Biol 1999 9 1331 1334 10.1016/S0960-9822(00)80057-3 10574762
-
(1999)
Curr Biol
, vol.9
, pp. 1331-1334
-
-
Kivisild, T.1
Bamshad, M.J.2
Kaldma, K.3
Metspalu, M.4
Metspalu, E.5
Reidla, M.6
Laos, S.7
Parik, J.8
Watkins, W.S.9
Dixon, M.E.10
Papiha, S.S.11
Mastana, S.S.12
Mir, M.R.13
Ferak, V.14
Villems, R.15
-
19
-
-
27644491406
-
Human mtDNA hypervariable regions, HVR I and II, hint at deep common maternal founder and subsequent maternal gene flow in Indian population groups
-
10.1007/s10038-005-0284-2 16205836
-
Sharma S Saha A Rai E Bhat A Bamezai R Human mtDNA hypervariable regions, HVR I and II, hint at deep common maternal founder and subsequent maternal gene flow in Indian population groups J Hum Genet 2005 50 497-506 10.1007/s10038-005-0284-2 16205836
-
(2005)
J Hum Genet
, vol.50
, pp. 497-506
-
-
Sharma, S.1
Saha, A.2
Rai, E.3
Bhat, A.4
Bamezai, R.5
-
20
-
-
0041522424
-
Virulence genes and neutral DNA markers of Helicobacter pylori isolates from different ethnic communities of West Bengal, India
-
179778 12904384 10.1128/JCM.41.8.3737-3743.2003
-
Datta S Chattopadhyay S Nair GB Mukhopadhyay AK Hembram J Berg DE Saha DR Khan A Santra A Bhattacharya SK Chowdhury A Virulence genes and neutral DNA markers of Helicobacter pylori isolates from different ethnic communities of West Bengal, India J Clin Microbiol 2003 41 3737-3743 179778 12904384 10.1128/JCM.41.8.3737-3743.2003
-
(2003)
J Clin Microbiol
, vol.41
, pp. 3737-3743
-
-
Datta, S.1
Chattopadhyay, S.2
Nair, G.B.3
Mukhopadhyay, A.K.4
Hembram, J.5
Berg, D.E.6
Saha, D.R.7
Khan, A.8
Santra, A.9
Bhattacharya, S.K.10
Chowdhury, A.11
-
21
-
-
0030029970
-
A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history
-
40205 8552603 10.1073/pnas.93.1.196
-
Underhill PA Jin L Zemans R Oefner PJ Cavalli-Sforza LL A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history Proc Natl Acad Sci USA 1996 93 196-200 40205 8552603 10.1073/pnas.93.1.196
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 196-200
-
-
Underhill, P.A.1
Jin, L.2
Zemans, R.3
Oefner, P.J.4
Cavalli-Sforza, L.L.5
-
23
-
-
0003621193
-
Ancient cities of the Indus valley civilization
-
Karachi: Oxford University Press
-
Kenoyer JM Ancient cities of the Indus valley civilization Karachi: Oxford University Press 1998
-
(1998)
-
-
Kenoyer, J.M.1
-
24
-
-
17944370402
-
Genetic evidence on the origins of Indian caste populations
-
311057 11381027 10.1101/gr.GR-1733RR
-
Bamshad M Kivisild T Watkins WS Dixon ME Ricker CE Rao BB Naidu JM Prasad BV Reddy PG Rasanayagam A Papiha SS Villems R Redd AJ Hammer MF Nguyen SV Carroll ML Batzer MA Jorde LB Genetic evidence on the origins of Indian caste populations Genome Res 2001 11 994-1004 311057 11381027 10.1101/gr.GR-1733RR
-
(2001)
Genome Res
, vol.11
, pp. 994-1004
-
-
Bamshad, M.1
Kivisild, T.2
Watkins, W.S.3
Dixon, M.E.4
Ricker, C.E.5
Rao, B.B.6
Naidu, J.M.7
Prasad, B.V.8
Reddy, P.G.9
Rasanayagam, A.10
Papiha, S.S.11
Villems, R.12
Redd, A.J.13
Hammer, M.F.14
Nguyen, S.V.15
Carroll, M.L.16
Batzer, M.A.17
Jorde, L.B.18
-
25
-
-
10744228209
-
Ethnic India: A genomic view, with special reference to peopling and structure
-
403703 14525929 10.1101/gr.1413403
-
Basu A Mukherjee N Roy S Sengupta S Banerjee S Chakraborty M Dey B Roy M Roy B Bhattacharyya NP Roychoudhury S Majumder PP Ethnic India: A genomic view, with special reference to peopling and structure Genome Res 2003 13 2277-2290 403703 14525929 10.1101/gr.1413403
-
(2003)
Genome Res
, vol.13
, pp. 2277-2290
-
-
Basu, A.1
Mukherjee, N.2
Roy, S.3
Sengupta, S.4
Banerjee, S.5
Chakraborty, M.6
Dey, B.7
Roy, M.8
Roy, B.9
Bhattacharyya, N.P.10
Roychoudhury, S.11
Majumder, P.P.12
-
26
-
-
0032005372
-
The DNA revolution in population genetics
-
9520599
-
Cavalli-Sforza LL The DNA revolution in population genetics TIG 1998 14 60-65 9520599
-
(1998)
TIG
, vol.14
, pp. 60-65
-
-
Cavalli-Sforza, L.L.1
-
27
-
-
0037370384
-
The application of molecular genetic approaches to the study of human evolution
-
10.1038/ng1113 12610536
-
Cavalli-Sforza LL Feldman MW The application of molecular genetic approaches to the study of human evolution Nat Genet 2003 33 Suppl 266-275 10.1038/ng1113 12610536
-
(2003)
Nat Genet
, vol.33
, Issue.SUPPL.
, pp. 266-275
-
-
Cavalli-Sforza, L.L.1
Feldman, M.W.2
-
28
-
-
32244447774
-
A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios
-
10.1073/pnas.0507714103
-
Sahoo S Singh A Himabindu G Banerjee J Sitalaximi T Gaikwad S Trivedi R Endicott P Kivisild T Metspalu M Villems R Kashyap VK A prehistory of Indian Y chromosomes: Evaluating demic diffusion scenarios Proc Natl Acad Sci USA 2005 103 843-848 10.1073/pnas.0507714103
-
(2005)
Proc Natl Acad Sci USA
, vol.103
, pp. 843-848
-
-
Sahoo, S.1
Singh, A.2
Himabindu, G.3
Banerjee, J.4
Sitalaximi, T.5
Gaikwad, S.6
Trivedi, R.7
Endicott, P.8
Kivisild, T.9
Metspalu, M.10
Villems, R.11
Kashyap, V.K.12
-
29
-
-
8644252623
-
The cag pathogenicity island of Helicobacter pylori is disrupted in the majority of patient isolates from different human populations
-
525253 15528729 10.1128/JCM.42.11.5302-5308.2004
-
Kauser F Khan AA Hussain MA Carroll IM Ahmad N Tiwari S Shouche Y Das B Alam M Ali SM Habibullah CM Sierra R Megraud F Sechi LA Ahmed N The cag pathogenicity island of Helicobacter pylori is disrupted in the majority of patient isolates from different human populations J Clin Microbiol 2004 42 5302-5308 525253 15528729 10.1128/JCM.42.11.5302-5308.2004
-
(2004)
J Clin Microbiol
, vol.42
, pp. 5302-5308
-
-
Kauser, F.1
Khan, A.A.2
Hussain, M.A.3
Carroll, I.M.4
Ahmad, N.5
Tiwari, S.6
Shouche, Y.7
Das, B.8
Alam, M.9
Ali, S.M.10
Habibullah, C.M.11
Sierra, R.12
Megraud, F.13
Sechi, L.A.14
Ahmed, N.15
-
30
-
-
12944316453
-
Distinctiveness of genotypes of Helicobacter pylori in Calcutta, India
-
94510 10809703 10.1128/JB.182.11.3219-3227.2000
-
Mukhopadhyay AK Kersulyte D Jeong J Datta S Ito Y Chowdhury A Chowdhury S Santra A Bhattacharya SK Azuma T Nair GB Berg DE Distinctiveness of genotypes of Helicobacter pylori in Calcutta, India J Bacteriol 2000 182 3219-3227 94510 10809703 10.1128/JB.182.11.3219-3227.2000
-
(2000)
J Bacteriol
, vol.182
, pp. 3219-3227
-
-
Mukhopadhyay, A.K.1
Kersulyte, D.2
Jeong, J.3
Datta, S.4
Ito, Y.5
Chowdhury, A.6
Chowdhury, S.7
Santra, A.8
Bhattacharya, S.K.9
Azuma, T.10
Nair, G.B.11
Berg, D.E.12
-
31
-
-
2942575557
-
Genomic analysis of Helicobacter pylori from Andhra Pradesh, south India: Molecular evidence for three major genetic clusters
-
Ahmed N Khan AA Alvi A Tiwari S Jyothirmayee CS Kauser F Ali M Habibullah CM Genomic analysis of Helicobacter pylori from Andhra Pradesh, south India: Molecular evidence for three major genetic clusters Curr Sci 2003 85 101-108
-
(2003)
Curr Sci
, vol.85
, pp. 101-108
-
-
Ahmed, N.1
Khan, A.A.2
Alvi, A.3
Tiwari, S.4
Jyothirmayee, C.S.5
Kauser, F.6
Ali, M.7
Habibullah, C.M.8
-
32
-
-
3142673371
-
Microevolution between paired antral and paired antral and corpus Helicobacter pylori isolates recovered from individual patients
-
10.1099/jmm.0.05440-0 15184540
-
Carroll IM Ahmed N Beesley SM Khan AA Ghousunnissa S O'Morain CA Habibullah CM Smyth CJ Microevolution between paired antral and paired antral and corpus Helicobacter pylori isolates recovered from individual patients J Med Microbiol 2004 53 669-677 10.1099/jmm.0.05440-0 15184540
-
(2004)
J Med Microbiol
, vol.53
, pp. 669-677
-
-
Carroll, I.M.1
Ahmed, N.2
Beesley, S.M.3
Khan, A.A.4
Ghousunnissa, S.5
O'Morain, C.A.6
Habibullah, C.M.7
Smyth, C.J.8
-
33
-
-
16844372080
-
Comparing genomes of Helicobacter pylori strains from the high altitude desert of Ladakh, India
-
1081395 15814963 10.1128/JCM.43.4.1538-1545.2005
-
Kauser F Hussain MA Ahmed I Ahmad N Habeeb A Khan AA Ahmed N Comparing genomes of Helicobacter pylori strains from the high altitude desert of Ladakh, India J Clin Microbiol 2005 43 1538-1545 1081395 15814963 10.1128/JCM.43.4.1538-1545.2005
-
(2005)
J Clin Microbiol
, vol.43
, pp. 1538-1545
-
-
Kauser, F.1
Hussain, M.A.2
Ahmed, I.3
Ahmad, N.4
Habeeb, A.5
Khan, A.A.6
Ahmed, N.7
-
34
-
-
23744448910
-
Pathogen evolution in vivo: Genome dynamics of two isolates obtained nine years apart from a duodenal ulcer patient infected with a single Helicobacter pylori strain
-
1233956 16081988 10.1128/JCM.43.8.4237-4241.2005
-
Prouzet-Mauleon V Hussain MA Lamouliatte H Kauser F Megraud F Ahmed N Pathogen evolution in vivo: Genome dynamics of two isolates obtained nine years apart from a duodenal ulcer patient infected with a single Helicobacter pylori strain J Clin Microbiol 2005 43 4237-4241 1233956 16081988 10.1128/JCM.43.8.4237-4241.2005
-
(2005)
J Clin Microbiol
, vol.43
, pp. 4237-4241
-
-
Prouzet-Mauleon, V.1
Hussain, M.A.2
Lamouliatte, H.3
Kauser, F.4
Megraud, F.5
Ahmed, N.6
-
35
-
-
0036136909
-
Polymorphisms of Helicobacter pylori HP0638 reflect geographic origin and correlate with cagA status
-
120108 11773122 10.1128/JCM.40.1.239-246.2002
-
Ando T Peek RM Pride D Levine SM Takata T Lee YC Kusugami K van der Ende A Kuipers EJ Kusters JG Blaser MJ Polymorphisms of Helicobacter pylori HP0638 reflect geographic origin and correlate with cagA status J Clin Microbiol 2002 40 239-246 120108 11773122 10.1128/JCM.40.1.239-246.2002
-
(2002)
J Clin Microbiol
, vol.40
, pp. 239-246
-
-
Ando, T.1
Peek, R.M.2
Pride, D.3
Levine, S.M.4
Takata, T.5
Lee, Y.C.6
Kusugami, K.7
van der Ende, A.8
Kuipers, E.J.9
Kusters, J.G.10
Blaser, M.J.11
-
36
-
-
3242810318
-
Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
10.1093/bib/5.2.150
-
Kumar S Tamura K Nei M Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinfor 2004 5 150-163 10.1093/bib/5.2.150
-
(2004)
Brief Bioinfor
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
37
-
-
18344366125
-
Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups
-
447592 11938495 10.1086/339933
-
Herrnstadt C Elson JL Fahy E Preston G Turnbull DM Anderson C Ghosh SS Olefsky JM Beal MF Davis RE Howell N Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups Am J Hum Genet 2002 70 1152-1171 447592 11938495 10.1086/339933
-
(2002)
Am J Hum Genet
, vol.70
, pp. 1152-1171
-
-
Herrnstadt, C.1
Elson, J.L.2
Fahy, E.3
Preston, G.4
Turnbull, D.M.5
Anderson, C.6
Ghosh, S.S.7
Olefsky, J.M.8
Beal, M.F.9
Davis, R.E.10
Howell, N.11
-
38
-
-
0035139147
-
Intraspecific gene genealogies: Trees grafting into networks
-
11146143 10.1016/S0169-5347(00)02026-7
-
Posada D Crandall KA Intraspecific gene genealogies: Trees grafting into networks Trends Ecol Evol 2001 16 37-45 11146143 10.1016/ S0169-5347(00)02026-7
-
(2001)
Trends Ecol Evol
, vol.16
, pp. 37-45
-
-
Posada, D.1
Crandall, K.A.2
-
39
-
-
23044456709
-
Comparative genomics of Helicobacter pylori isolates recovered from ulcer disease patients in England
-
1180443 15916705 10.1186/1471-2180-5-32
-
Kauser F Hussain MA Ahmed I Srinivas S Devi SM Majeed AA Rao KR Khan AA Sechi LA Ahmed N Comparative genomics of Helicobacter pylori isolates recovered from ulcer disease patients in England BMC Microbiol 2005 5 32 1180443 15916705 10.1186/1471-2180-5-32
-
(2005)
BMC Microbiol
, vol.5
, pp. 32
-
-
Kauser, F.1
Hussain, M.A.2
Ahmed, I.3
Srinivas, S.4
Devi, S.M.5
Majeed, A.A.6
Rao, K.R.7
Khan, A.A.8
Sechi, L.A.9
Ahmed, N.10
-
40
-
-
34447646719
-
-
'pubMLST database' http://www.pubmlst.org
-
-
-
-
41
-
-
34447625716
-
'Network package'
-
'Network package' http://www.fluxus-engineering.com
-
-
-
-
43
-
-
0032900678
-
Median-joining networks for inferring intraspecific phylogenies using median networks
-
10331250
-
Bandelt H-J Forster P Röhl A Median-joining networks for inferring intraspecific phylogenies using median networks Mol Biol Evol 1999 16 37-48 10331250
-
(1999)
Mol Biol Evol
, vol.16
, pp. 37-48
-
-
Bandelt, H.-J.1
Forster, P.2
Röhl, A.3
-
44
-
-
0037165666
-
Helicobacter pylori in north and south America before Columbus
-
10.1016/S0014-5793(02)02617-0 12062433
-
Yamaoka Y Orito E Mizokami M Gutierrez O Saitou N Kodama T Osato MS Kim JG Ramirez FC Mahachai V Graham DY Helicobacter pylori in north and south America before Columbus FEBS Lett 2002 517 180-184 10.1016/ S0014-5793(02)02617-0 12062433
-
(2002)
FEBS Lett
, vol.517
, pp. 180-184
-
-
Yamaoka, Y.1
Orito, E.2
Mizokami, M.3
Gutierrez, O.4
Saitou, N.5
Kodama, T.6
Osato, M.S.7
Kim, J.G.8
Ramirez, F.C.9
Mahachai, V.10
Graham, D.Y.11
-
45
-
-
4544334936
-
Oncogenic mechanisms of the Helicobacter pylori CagA protein
-
10.1038/nrc1433 15343275
-
Hatakeyama M Oncogenic mechanisms of the Helicobacter pylori CagA protein Nat Rev Cancer 2004 4 688-694 10.1038/nrc1433 15343275
-
(2004)
Nat Rev Cancer
, vol.4
, pp. 688-694
-
-
Hatakeyama, M.1
-
46
-
-
0038628938
-
DNA-Level characterization of Helicobacter pylori strains from patients with overt disease and with benign infections in Bangladesh
-
154730 12734242 10.1128/JCM.41.5.2008-2014.2003
-
Rahman M Mukhopadhyay AK Nahar S Datta S Ahmad MM Sarker S Masud IM Engstrand L Albert MJ Nair GB Berg DE DNA-Level characterization of Helicobacter pylori strains from patients with overt disease and with benign infections in Bangladesh J Clin Microbiol 2003 41 2008-2014 154730 12734242 10.1128/JCM.41.5.2008-2014.2003
-
(2003)
J Clin Microbiol
, vol.41
, pp. 2008-2014
-
-
Rahman, M.1
Mukhopadhyay, A.K.2
Nahar, S.3
Datta, S.4
Ahmad, M.M.5
Sarker, S.6
Masud, I.M.7
Engstrand, L.8
Albert, M.J.9
Nair, G.B.10
Berg, D.E.11
-
48
-
-
0033785326
-
Distribution of open reading frames of plasticity region of strain J99 in Helicobacter pylori strains isolated from gastric carcinoma and gastritis patients in Costa Rica
-
97705 11035731 10.1128/IAI.68.11.6240-6249.2000
-
Occhialini A Marais A Alm R Akanuma M Mitsuno Y Imai Y Yoshida H Shiratori Y Omata M Distribution of open reading frames of plasticity region of strain J99 in Helicobacter pylori strains isolated from gastric carcinoma and gastritis patients in Costa Rica Infect Immun 2000 68 6240-6249 97705 11035731 10.1128/IAI.68.11.6240-6249.2000
-
(2000)
Infect Immun
, vol.68
, pp. 6240-6249
-
-
Occhialini, A.1
Marais, A.2
Alm, R.3
Akanuma, M.4
Mitsuno, Y.5
Imai, Y.6
Yoshida, H.7
Shiratori, Y.8
Omata, M.9
-
49
-
-
2942622320
-
Distinct diversity of the cag pathogenicity island among Helicobacter pylori strains in Japan
-
427816 15184428 10.1128/JCM.42.6.2508-2517.2004
-
Azuma T Yamakawa A Yamazaki S Ohtani M Ito Y Muramatsu A Suto H Yamazaki Y Keida Y Higashi H Hatakeyama M Distinct diversity of the cag pathogenicity island among Helicobacter pylori strains in Japan J Clin Microbiol 2004 42 2508-2517 427816 15184428 10.1128/ JCM.42.6.2508-2517.2004
-
(2004)
J Clin Microbiol
, vol.42
, pp. 2508-2517
-
-
Azuma, T.1
Yamakawa, A.2
Yamazaki, S.3
Ohtani, M.4
Ito, Y.5
Muramatsu, A.6
Suto, H.7
Yamazaki, Y.8
Keida, Y.9
Higashi, H.10
Hatakeyama, M.11
|