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Volumn 157, Issue 11, 2012, Pages 2143-2151

Tracing the genetic history of porcine reproductive and respiratory syndrome viruses derived from the complete ORF 5-7 sequences: A Bayesian coalescent approach

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

EID: 84868491374     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-012-1408-6     Document Type: Article
Times cited : (9)

References (47)
  • 1
    • 34250170123 scopus 로고    scopus 로고
    • Genetic diversity and phylogenetic analysis of glycoprotein 5 of PRRSV isolates in mainland China from 1996 to 2006: coexistence of two NA-subgenotypes with great diversity
    • An TQ, Zhou YJ, Liu GQ, Tian ZJ, Li J, Qiu HJ, Tong GZ (2007) Genetic diversity and phylogenetic analysis of glycoprotein 5 of PRRSV isolates in mainland China from 1996 to 2006: coexistence of two NA-subgenotypes with great diversity. Vet Microbiol 123: 43-52.
    • (2007) Vet Microbiol , vol.123 , pp. 43-52
    • An, T.Q.1    Zhou, Y.J.2    Liu, G.Q.3    Tian, Z.J.4    Li, J.5    Qiu, H.J.6    Tong, G.Z.7
  • 2
    • 0032945866 scopus 로고    scopus 로고
    • T cell responses to the structural polypeptides of porcine reproductive and respiratory syndrome virus
    • Bautista EM, Suárez P, Molitor TW (1999) T cell responses to the structural polypeptides of porcine reproductive and respiratory syndrome virus. Arch Virol 144: 117-134.
    • (1999) Arch Virol , vol.144 , pp. 117-134
    • Bautista, E.M.1    Suárez, P.2    Molitor, T.W.3
  • 3
    • 33748923085 scopus 로고    scopus 로고
    • Molecular characterization of recent Korean porcine reproductive and respiratory syndrome (PRRS) viruses and comparison to other Asian PRRS viruses
    • Cha SH, Choi EJ, Park JH, Yoon SR, Song JY, Kwon JH, Song HJ, Yoon KJ (2006) Molecular characterization of recent Korean porcine reproductive and respiratory syndrome (PRRS) viruses and comparison to other Asian PRRS viruses. Vet Microbiol 117: 248-257.
    • (2006) Vet Microbiol , vol.117 , pp. 248-257
    • Cha, S.H.1    Choi, E.J.2    Park, J.H.3    Yoon, S.R.4    Song, J.Y.5    Kwon, J.H.6    Song, H.J.7    Yoon, K.J.8
  • 4
    • 79955773883 scopus 로고    scopus 로고
    • Emergence of novel European genotype porcine reproductive and respiratory syndrome virus in mainland China
    • Chen N, Cao Z, Yu X, Deng X, Zhao T, Wang L, Liu Q, Li X, Tian K (2011) Emergence of novel European genotype porcine reproductive and respiratory syndrome virus in mainland China. J Gen Virol 92: 880-892.
    • (2011) J Gen Virol , vol.92 , pp. 880-892
    • Chen, N.1    Cao, Z.2    Yu, X.3    Deng, X.4    Zhao, T.5    Wang, L.6    Liu, Q.7    Li, X.8    Tian, K.9
  • 5
    • 0034106003 scopus 로고    scopus 로고
    • Current knowledge on the structural proteins of porcine reproductive and respiratory syndrome (PRRS) virus: comparison of the North American and European isolates
    • Dea S, Gagnon CA, Mardassi H, Pirzadeh B, Rogan D (2000) Current knowledge on the structural proteins of porcine reproductive and respiratory syndrome (PRRS) virus: comparison of the North American and European isolates. Arch Virol 145: 659-688.
    • (2000) Arch Virol , vol.145 , pp. 659-688
    • Dea, S.1    Gagnon, C.A.2    Mardassi, H.3    Pirzadeh, B.4    Rogan, D.5
  • 7
    • 33344465800 scopus 로고    scopus 로고
    • Relaxed phylogenetics and dating with confidence
    • doi:10.1371/journal.pbio.0040088
    • Drummond AJ, Ho SY, Phillips MJ, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Bio 4: e88. doi: 10. 1371/journal. pbio. 0040088.
    • (2006) PLoS Bio , vol.4
    • Drummond, A.J.1    Ho, S.Y.2    Phillips, M.J.3    Rambaut, A.4
  • 8
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 9
    • 0030966601 scopus 로고    scopus 로고
    • Baculovirus expression of proteins of porcine reproductive and respiratory syndrome virus strain Olot/91. Involvement of ORF3 and ORF5 proteins in protection
    • Duran JP, Climent I, Sarraseca J, Urniza A, Cortés E, Vela C, Casal JI (1997) Baculovirus expression of proteins of porcine reproductive and respiratory syndrome virus strain Olot/91. Involvement of ORF3 and ORF5 proteins in protection. Virus Genes 14: 19-29.
    • (1997) Virus Genes , vol.14 , pp. 19-29
    • Duran, J.P.1    Climent, I.2    Sarraseca, J.3    Urniza, A.4    Cortés, E.5    Vela, C.6    Casal, J.I.7
  • 10
    • 0035950603 scopus 로고    scopus 로고
    • A molecular clock dates the common ancestor of European-type porcine reproductive and respiratory syndrome virus at more than 10 years before the emergence of disease
    • Forsberg R, Oleksiewicz MB, Petersen AM, Hein J, Bøtner A, Storgaard T (2001) A molecular clock dates the common ancestor of European-type porcine reproductive and respiratory syndrome virus at more than 10 years before the emergence of disease. Virology 289: 174-179.
    • (2001) Virology , vol.289 , pp. 174-179
    • Forsberg, R.1    Oleksiewicz, M.B.2    Petersen, A.M.3    Hein, J.4    Bøtner, A.5    Storgaard, T.6
  • 11
    • 26444495703 scopus 로고    scopus 로고
    • Divergence time of porcine reproductive and respiratory syndrome virus subtypes
    • Forsberg R (2005) Divergence time of porcine reproductive and respiratory syndrome virus subtypes. Mol Biol Evol 22: 2131-2134.
    • (2005) Mol Biol Evol , vol.22 , pp. 2131-2134
    • Forsberg, R.1
  • 12
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S, Gascuel O (2003) A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52: 696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 13
    • 0002051540 scopus 로고    scopus 로고
    • BIOEDIT: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT
    • Hall TA (1999) BIOEDIT: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 14
    • 16344393530 scopus 로고    scopus 로고
    • The origin and evolution of porcine reproductive and respiratory syndrome viruses
    • Hanada K, Suzuki Y, Nakane T, Hirose O, Gojobori T (2005) The origin and evolution of porcine reproductive and respiratory syndrome viruses. Mol Biol Evol 22: 1024-1031.
    • (2005) Mol Biol Evol , vol.22 , pp. 1024-1031
    • Hanada, K.1    Suzuki, Y.2    Nakane, T.3    Hirose, O.4    Gojobori, T.5
  • 15
    • 33847110339 scopus 로고    scopus 로고
    • Simple and rapid detection of the porcine reproductive and respiratory syndrome virus from pig whole blood using filter paper
    • Inoue R, Tsukahara T, Sunaba C, Itoh M, Ushida K (2007) Simple and rapid detection of the porcine reproductive and respiratory syndrome virus from pig whole blood using filter paper. J Virol Methods 141: 102-106.
    • (2007) J Virol Methods , vol.141 , pp. 102-106
    • Inoue, R.1    Tsukahara, T.2    Sunaba, C.3    Itoh, M.4    Ushida, K.5
  • 16
    • 33644901531 scopus 로고    scopus 로고
    • DNA vaccines co-expressing GP5 and M proteins of porcine reproductive and respiratory syndrome virus (PRRSV) display enhanced immunogenicity
    • Jiang Y, Xiao S, Fang L, Yu X, Song Y, Niu C, Chen H (2006) DNA vaccines co-expressing GP5 and M proteins of porcine reproductive and respiratory syndrome virus (PRRSV) display enhanced immunogenicity. Vaccine 24: 2869-2879.
    • (2006) Vaccine , vol.24 , pp. 2869-2879
    • Jiang, Y.1    Xiao, S.2    Fang, L.3    Yu, X.4    Song, Y.5    Niu, C.6    Chen, H.7
  • 17
    • 0002628643 scopus 로고
    • Reproductive failure of unknown etiology
    • Keffaber K (1989) Reproductive failure of unknown etiology. Amer Assoc Swine Pract Newsl 1: 1-10.
    • (1989) Amer Assoc Swine Pract Newsl , vol.1 , pp. 1-10
    • Keffaber, K.1
  • 18
    • 4944232958 scopus 로고    scopus 로고
    • Impact of genetic diversity of European-type porcine reproductive and respiratory syndrome virus strains on vaccine efficacy
    • Labarque G, van Reeth K, Nauwynck H, Drexler C, van Gucht S, Pensaert M (2004) Impact of genetic diversity of European-type porcine reproductive and respiratory syndrome virus strains on vaccine efficacy. Vaccine 22: 4183-4190.
    • (2004) Vaccine , vol.22 , pp. 4183-4190
    • Labarque, G.1    van Reeth, K.2    Nauwynck, H.3    Drexler, C.4    van Gucht, S.5    Pensaert, M.6
  • 19
    • 13444251528 scopus 로고    scopus 로고
    • RDP2: recombination detection and analysis from sequence alignments
    • Martin DP, Williamson C, Posada D (2005) RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21: 260-262.
    • (2005) Bioinformatics , vol.21 , pp. 260-262
    • Martin, D.P.1    Williamson, C.2    Posada, D.3
  • 20
    • 0029616540 scopus 로고
    • Sequence comparison of open reading frames 2 to 5 of low and high virulence United States isolates of porcine reproductive and respiratory syndrome virus
    • Meng XJ, Paul PS, Halbur PG, Morozov I (1995) Sequence comparison of open reading frames 2 to 5 of low and high virulence United States isolates of porcine reproductive and respiratory syndrome virus. J Gen Virol 76: 3181-3188.
    • (1995) J Gen Virol , vol.76 , pp. 3181-3188
    • Meng, X.J.1    Paul, P.S.2    Halbur, P.G.3    Morozov, I.4
  • 22
    • 64249116196 scopus 로고    scopus 로고
    • Complete genomic characterization of a European type 1 porcine reproductive and respiratory syndrome virus isolate in Korea
    • Nam E, Park CK, Kim SH, Joo YS, Yeo SG, Lee C (2009) Complete genomic characterization of a European type 1 porcine reproductive and respiratory syndrome virus isolate in Korea. Arch Virol 154: 629-638.
    • (2009) Arch Virol , vol.154 , pp. 629-638
    • Nam, E.1    Park, C.K.2    Kim, S.H.3    Joo, Y.S.4    Yeo, S.G.5    Lee, C.6
  • 23
    • 0032889516 scopus 로고    scopus 로고
    • Porcine reproductive and respiratory syndrome virus comparison: divergent evolution on two continents
    • Nelsen CJ, Murtaugh MP, Faaberg KS (1999) Porcine reproductive and respiratory syndrome virus comparison: divergent evolution on two continents. J Virol 73: 270-280.
    • (1999) J Virol , vol.73 , pp. 270-280
    • Nelsen, C.J.1    Murtaugh, M.P.2    Faaberg, K.S.3
  • 25
    • 15744370504 scopus 로고    scopus 로고
    • New insights into the genetic diversity of European porcine reproductive and respiratory syndrome virus (PRRSV)
    • Pesch S, Meyer C, Ohlinger VF (2005) New insights into the genetic diversity of European porcine reproductive and respiratory syndrome virus (PRRSV). Vet Microbiol 107: 31-48.
    • (2005) Vet Microbiol , vol.107 , pp. 31-48
    • Pesch, S.1    Meyer, C.2    Ohlinger, V.F.3
  • 26
    • 0043127469 scopus 로고    scopus 로고
    • Porcine reproductive and respiratory syndrome virus: origin hypothesis
    • Plagemann PG (2003) Porcine reproductive and respiratory syndrome virus: origin hypothesis. Emerg Infect Dis 9: 903-908.
    • (2003) Emerg Infect Dis , vol.9 , pp. 903-908
    • Plagemann, P.G.1
  • 27
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: testing the model of DNA substitution
    • Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 28
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 29
    • 84872996080 scopus 로고    scopus 로고
    • Available at
    • Rambaut A (2006) Available at: http://evolve. zoo. ox. ac. uk/beast.
    • (2006)
    • Rambaut, A.1
  • 30
    • 0036844480 scopus 로고    scopus 로고
    • Nucleocapsid protein-based enzyme-linked immunosorbent assay for detection and differentiation of antibodies against European and North American porcine reproductive and respiratory syndrome virus
    • Seuberlich T, Tratschin JD, Thür B, Hofmann MA (2002) Nucleocapsid protein-based enzyme-linked immunosorbent assay for detection and differentiation of antibodies against European and North American porcine reproductive and respiratory syndrome virus. Clin Diagn Lab Immunol 9: 1183-1191.
    • (2002) Clin Diagn Lab Immunol , vol.9 , pp. 1183-1191
    • Seuberlich, T.1    Tratschin, J.D.2    Thür, B.3    Hofmann, M.A.4
  • 32
    • 77956626910 scopus 로고    scopus 로고
    • A phylogeny-based evolutionary, demographical and geographical dissection of North American type 2 porcine reproductive and respiratory syndrome viruses
    • Shi M, Lam TT, Hon C-C, Murtaugh MP, Davies PR, Hui RK, Li J, Wong LT, Yip CW, Jiang JW, Leung FC-C (2010) A phylogeny-based evolutionary, demographical and geographical dissection of North American type 2 porcine reproductive and respiratory syndrome viruses. J Virol 84: 8700-8711.
    • (2010) J Virol , vol.84 , pp. 8700-8711
    • Shi, M.1    Lam, T.T.2    Hon, C.-C.3    Murtaugh, M.P.4    Davies, P.R.5    Hui, R.K.6    Li, J.7    Wong, L.T.8    Yip, C.W.9    Jiang, J.W.10    Leung, F.C.-C.11
  • 33
    • 77957295164 scopus 로고    scopus 로고
    • Accelerated evolution of PRRSV during recent outbreaks in China
    • Song J, Shen D, Cui J, Zhao B (2010) Accelerated evolution of PRRSV during recent outbreaks in China. Virus Genes 41: 241-245.
    • (2010) Virus Genes , vol.41 , pp. 241-245
    • Song, J.1    Shen, D.2    Cui, J.3    Zhao, B.4
  • 34
    • 0036324050 scopus 로고    scopus 로고
    • Identification of radically different variants of porcine reproductive and respiratory syndrome virus in Eastern Europe: Towards a common ancestor for European and American viruses
    • Stadejek T, Stankevicius A, Storgaard T, Olekssiewicz MB, Belak S, Drew YW, Pejsak Z (2002) Identification of radically different variants of porcine reproductive and respiratory syndrome virus in Eastern Europe: Towards a common ancestor for European and American viruses. J Gen Virol 83: 1861-1873.
    • (2002) J Gen Virol , vol.83 , pp. 1861-1873
    • Stadejek, T.1    Stankevicius, A.2    Storgaard, T.3    Olekssiewicz, M.B.4    Belak, S.5    Drew, Y.W.6    Pejsak, Z.7
  • 35
    • 33745621609 scopus 로고    scopus 로고
    • Porcine reproductive and respiratory syndrome virus strains of exceptional diversity in Eastern Europe support the definition of new genetic subtypes
    • Stadejek T, Oleksiewicz MB, Potapchuk D, Podgorska K (2006) Porcine reproductive and respiratory syndrome virus strains of exceptional diversity in Eastern Europe support the definition of new genetic subtypes. J Gen Virol 87: 1835-1841.
    • (2006) J Gen Virol , vol.87 , pp. 1835-1841
    • Stadejek, T.1    Oleksiewicz, M.B.2    Potapchuk, D.3    Podgorska, K.4
  • 36
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies
    • Strimmer K, von Haeseler A (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 13: 964-969.
    • (1996) Mol Biol Evol , vol.13 , pp. 964-969
    • Strimmer, K.1    von Haeseler, A.2
  • 37
    • 0034983646 scopus 로고    scopus 로고
    • Bayesian selection of continuous- time Markov chain evolutionary models
    • Suchard MA, Weiss RE, Sinsheimer JS (2001) Bayesian selection of continuous- time Markov chain evolutionary models. Mol Biol Evol 18: 1001-1013.
    • (2001) Mol Biol Evol , vol.18 , pp. 1001-1013
    • Suchard, M.A.1    Weiss, R.E.2    Sinsheimer, J.S.3
  • 38
    • 33747847779 scopus 로고    scopus 로고
    • PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
    • Suyama M, Torrents D, Bork P (2006) PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acid Res 34: W609-W612.
    • (2006) Nucleic Acid Res , vol.34
    • Suyama, M.1    Torrents, D.2    Bork, P.3
  • 39
    • 23544438663 scopus 로고    scopus 로고
    • The Clustal-windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal-windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 22: 4673-4680.
    • (1997) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 40
    • 77952358263 scopus 로고    scopus 로고
    • Phylogenetic analysis and molecular characteristics of seven variant Chinese field isolates of PRRSV
    • Wang C, Wu B, Amer S, Luo J, Zhang H, Guo Y, Dong G, Zhao B, He H (2010) Phylogenetic analysis and molecular characteristics of seven variant Chinese field isolates of PRRSV. BMC Microbiol 20(10): 146.
    • (2010) BMC Microbiol , vol.20 , Issue.10 , pp. 146
    • Wang, C.1    Wu, B.2    Amer, S.3    Luo, J.4    Zhang, H.5    Guo, Y.6    Dong, G.7    Zhao, B.8    He, H.9
  • 43
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z (1997) PAML: A program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci 13: 555-556.
    • (1997) Comput Appl Biosci , vol.13 , pp. 555-556
    • Yang, Z.1
  • 44
    • 43349095873 scopus 로고    scopus 로고
    • Genetic characterization of the Korean porcine reproductive and respiratory syndrome viruses based on the nucleocapsid protein gene (ORF7) sequences
    • Yoon SH, Song JY, Lee CH, Choi EJ, Cho IS, Kim B (2008) Genetic characterization of the Korean porcine reproductive and respiratory syndrome viruses based on the nucleocapsid protein gene (ORF7) sequences. Arch Virol 153: 627-635.
    • (2008) Arch Virol , vol.153 , pp. 627-635
    • Yoon, S.H.1    Song, J.Y.2    Lee, C.H.3    Choi, E.J.4    Cho, I.S.5    Kim, B.6
  • 45
    • 65849241956 scopus 로고    scopus 로고
    • Construction and the immunogenicity of the recombinant Modified Vaccinia Virus Ankala co-expressing ORF4, ORF5 and ORF6 genes of porcine reproductive and Respiratory Syndrome Virus NJ-a strain
    • Zheng QS, Bi ZX, Li P, Chen DS, Chen PY (2007) Construction and the immunogenicity of the recombinant Modified Vaccinia Virus Ankala co-expressing ORF4, ORF5 and ORF6 genes of porcine reproductive and Respiratory Syndrome Virus NJ-a strain. Wei Sheng Wu Xue Bao 47: 345-349.
    • (2007) Wei Sheng Wu Xue Bao , vol.47 , pp. 345-349
    • Zheng, Q.S.1    Bi, Z.X.2    Li, P.3    Chen, D.S.4    Chen, P.Y.5
  • 47
    • 78650568233 scopus 로고    scopus 로고
    • Complete genomic characterization of a Chinese isolate of porcine reproductive and respiratory syndrome virus
    • Zhu L, Zhang G, Ma J, He X, Xie Q, Bee Y, Gong SZ (2011) Complete genomic characterization of a Chinese isolate of porcine reproductive and respiratory syndrome virus. Vet Microbiol 147: 274-282.
    • (2011) Vet Microbiol , vol.147 , pp. 274-282
    • Zhu, L.1    Zhang, G.2    Ma, J.3    He, X.4    Xie, Q.5    Bee, Y.6    Gong, S.Z.7


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