Complete genomic characterization of a Chinese isolate of porcine reproductive and respiratory syndrome virus

Veterinary Microbiology

Volumn 147, Issue 3-4, 2011, Pages 274-282

  Zhu, Ling ^a   Zhang, Guanqun ^a   Ma, Jingyun ^a   He, Xiaoming ^a   Xie, Qingmei ^a   Bee, Yingzuo ^a   Gong, Shan Zhong ^b  

^a SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

^b KANSAS STATE UNIVERSITY   (United States)

Author keywords

China; Full length genome; Novel amino acid deletion in NSP2; PRRSV

Indexed keywords

NONSTRUCTURAL PROTEIN 2;

ANIMAL TISSUE; ANTIGENICITY; ARTERIVIRUS; ARTICLE; CHINA; CONTROLLED STUDY; GENE DELETION; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; STRAIN DIFFERENCE; UNINDEXED SEQUENCE; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; VIRUS VIRULENCE;

AMINO ACID SEQUENCE; ANIMALS; ANTIGENS, VIRAL; CHINA; GENES, VIRAL; GENOME, VIRAL; GENOTYPE; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; PHYLOGENY; PORCINE REPRODUCTIVE AND RESPIRATORY SYNDROME; PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS; SEQUENCE ALIGNMENT; SWINE;

LELYSTAD VIRUS; PORCINE RESPIRATORY AND REPRODUCTIVE SYNDROME VIRUS;

EID: 78650568233     PISSN: 03781135     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.vetmic.2010.07.001     Document Type: Article

References (34)

1. An T.Q., Zhou Y.J., Liu G.Q., Tian Z.J., Li J., Qiu H.J., Tong G.Z. Genetic diversity and phylogenetic analysis of glycoprotein 5 of PRRSV isolates in mainland China from 1996 to 2006: coexistence of two NA-subgenotypes with great diversity. Vet. Microbiol. 2007, 123:43-52.
2. Ansari I.H., Kwon B.J., Osorio F.A., Pattnaik A.K. Influence of N-linked glycosylation of porcine reproductive and respiratory syndrome virus GP5 on virus infectivity, antigenicity, and ability to induce neutralizing antibodies. J. Virol. 2006, 80:3994-4004.
3. Bautista E.M., Faaberg K.S., Mickelson D., McGruder E.D. Functional properties of the predicted helicase of porcine reproductive and respiratory syndrome virus. Virology 2002, 298:258-270.
4. Benfield D.A., Nelson E., Collins J.E., Harris L., Goyal S.M., Robison D., Christianson W.T., Morrison R.B., Gorcyca D., Chladek D. Characterization of swine infertility and respiratory syndrome (SIRS) virus (isolate ATCC VR-2332). J. Vet. Diagn. Invest. 1992, 4:127-133.
5. Cavanagh D. Nidoviales: a new order comprising Cornaviridae and Arteriviridae. Arch. Virol. 1997, 142:629-633.
6. Cho J., Dee S. Porcine reproductive and respiratory syndrome virus. Theriogenology 2006, 66:655-662.
7. Dea S., Gagnon C.A., Mardassi H., Pirzadeh B., Rogan D. Current knowledge on the structural proteins of the structural proteins of porcine reproductive and respiratory syndrome (PRRS) virus: comparison of the North American and European isolates. Arch. Virol. 2000, 145:659-688.
8. de Lima M., Pattnaik A.K., Flores E.F., Osorio F.A. Serologic marker candidates identified among B-cell linear epitopes of Nsp2 and structural proteins of a North American strain of porcine reproductive and respiratory syndrome virus. Virology 2006, 353:410-421.
9. Dewey C., Charbonneau G., Carman S., Hamel A., Nayar G., Friendship R., Eernisse K., Swenson S. Lelystad-like strain of porcine reproductive and respiratory syndrome virus (PRRSV) identified in Canadian swine. Can. Vet. J. 2000, 41:493-494.
10. den Boon J.A., Faaberg K.S., Meulenberg J.J., Wassenaar A.L., Plagemann P.G., Gorbalenya A.E., Snijder E.J. Processing and evolution of the N-terminal region of the arterivirus replicase ORF1a protein: identification of two papainlike cysteine proteases. J. Virol. 1995, 69:4500-4505.
11. Faaberg K.S., Hocker J.D., Erdman M.M., Harris D.L., Nelson E.A., Torremorell M., Plagemann P.G. Neutralizing antibody responses of pigs infected with natural GP5 N-glycan mutants of porcine reproductive and respiratory syndrome virus. Viral Immunol. 2006, 19:294-304.
12. Fang Y., Kim D.Y., Ropp S., Steen P., Christopher-Hemnings J., Nelson E.A., Rowland R.R. Heterogenity in Nsp 2 of European-like porcine reproductive and respiratory syndrome viruses isolated in the United States. Virus Res. 2004, 100:229-235.
13. Fang Y., Schneider P., Zhang W.P., Faaberg K.S., Nelson E.A., Rowland R.R. Diversity and evolution of a newly emerged North American Type 1 porcine arterivirus: analysis of isolates collected between 1999 and 2004. Arch. Virol. 2007, 152:1009-1017.
14. Gonin P., Pirzadeh B., Gagnon C.A., Dea S. Seroneutralization of porcine reproductive and respiratory syndrome virus correlates with antibody response to the GP5 major envelop glycoprotein. J. Vet. Diagn. Invest. 1999, 11:20-26.
15. Li Y., Wang X., Bo K., Wang X., Tang B., Yang B., Jiang W., Jiang P. Emergence of a highly pathogenic porcine reproductive and respiratory syndrome virus in the Mid-Eastern region of China. Vet. J. 2007, 174:577-584.
16. Li Y.F., Wang X.L., Jiang P., Wang X.F., Chen W., Wang X., Wang K.W. Genetic variation analysis of porcine reproductive and respiratory syndrome virus isolated in China from 2002 to 2007 based on ORF5. Vet. Microbiol. 2009, 138:150-155.
17. Madsen K.G., Hansen C.M., Madsen E.S., Standbygaard B., Botner A., Sorensen K.J. Sequence analysis of porcine reproductive and respiratory syndrome virus of the American type collected from Danish swine herds. Arch. Virol. 1998, 143:1683-1700.
18. Mardassi Mardassi H., Mounir S., Dea S. Molecular analysis of the ORFs 3 to 7 of porcine reproductive and respiratory syndrome virus, Quebec reference strain. Arch. Virol. 1995, 140:1405-1418.
19. Meng X.J., Paul P.S., Halbur P.G., Morozov I. Sequence comparison of open reading frames 2 to 5 of low and high virulence United States isolates of porcine reproductive and respiratory syndrome virus. J. Gen. Virol. 1995, 76:3181-3188.
20. Meulenberg J.J., Hulst M.M., de Meijer E.J., Moonen P.J.M., den Besten A., De Kluyver E.P., Wensvoort G., Moormann R.J.M. Lelystad virus, the causative agent of porcine epidemic abortion and respiratory syndrome (PEARS), is related to LDV and EAV. Virology 1993, 192:62-72.
21. Nam E., Park C.K., Kim S.H., Joo Y.S., Yeo S.G., Lee C. Complete genomic characterization of a European type 1 porcine reproductive and respiratory syndrome virus isolate in Korea. Arch. Virol. 2009, 154:629-638.
22. Nielsen J., Botner A., Tingstedt J.E., Aasted B., Johnsen C.K., Riber U., Lind P. In utero infection with porcine reproductive and respiratory syndrome virus modulates leukocyte subpopulations in peripheral blood and bronchoalveolar fluid of surviving piglets. Vet. Immunopathol. 2003, 93:135-151.
23. Oleksiewicz M.B., Botner A., Nielsen J., Storgaard T. Determination of 5'-leader sequences from radically disparate stains of porcine reproductive and respiratory syndrome virus reveals the presence of highly conserved sequence motifs. Arch. Virol. 1999, 144:981-987.
24. Oleksiewicz M.B., Botner A., Toft P., Grubbe T., Nielsen J., Kamstrup S., Storgaard T. Emergence of porcine reproductive and respiratory syndrome virus deletion mutants: correlation with the porcine antibody response to a hypervariable site in the ORF 3 structural glycoprotein. Virology 2000, 267:135-140.
25. Ropp S.L., Mahlum Wees C.E., Fang Y., Nelson E.A., Rossow K.D., Bien M., Arndt B., Preszler S., Steen P., Christopher-Hennings J., Collins J.E., Benfield D.A., Faaberg K.S. Characterization of emerging European-like porcine reproductive and respiratory syndrome virus isolates in the United States. J. Virol. 2004, 78:3684-3703.
26. Tian K., Yu X., Zhao T., Feng Y., Cao Z., Wang C., Hu Y., Chen X., Hu D., Tian X., Liu D., Zhang S., Deng A., Yang Y., Kang L., Sun M., Jin P., Wang S., Kitamura Y., Yan J., Gao G.F. Emergence of fatal PRRSV variants: unparalleled outbreaks of atypical PRRS in China and molecular dissection of the unique hallmark. PLoS ONE 2007, 2:e526.
27. Van Dinten L.C., Rensen S., Gorbalenya A.E., Snijder E.J. Proteolytic processing of the open reading frame 1b-encoded part of arterivirus replicase and is mediated by nsp4 serine protease and is essential for virus replication. J. Virol. 1999, 73:2027-2037.
28. Wang C., Lee F., Huang T.S., Pan C.H., Jong M.H., Chao P.H. Genetic variation in open reading frame 5 gene of porcine reproductive and respiratory syndrome virus in Taiwan. Vet. Microbiol. 2008, 131:339-347.
29. Wensvoort G., Tepstra C., Pol J.M., ter Laak E.A., Bloemraad M., de Kluyver E.P., Kragten C., van Buiten L., den Besten A., Wagenaar F., Broekhuijsen J.M., Moonen P.L.J.M., Zestra T., de Boer E.A., Tibben H.J., de Jong M.F., van Veld P., Groenland G.J.R., van Gennep J.A., Voets M.T., Verheijden J.H.M., Braamskamp J. Mystery swine disease in the Netherlands; the isolation of Lelystad virus. Vet. Q. 1991, 13:121-130.
30. Yoshii M., Okinaga T., Miyazaki A., Kato K., Ikeda H., Tsunemitsu H. Genetic polymorphism of the nsp2 gene in North American type porcine reproductive and respiratory syndrome virus emerged in China. Transbond. Emerg. Dis. 2008, 55:152-164.
31. Yoshii M., Okinaga T., Miyazaki A., Kato K., Ikeda H., Tsunemitsu H. Genetic polymorphism of the nsp2 gene in North American type-Porcine reproductive and respiratory syndrome virus. Arch. Virol. 2008, 153:1323-1334.
32. Ziebuhr J., Snijder E.J., Gorbalenya A.E. Virus-encoded proteinases and proteolytic processing in Nidovirales. J. Gen. Virol. 2000, 81:853-879.
33. Zhou L., Zhang J.L., Zeng J.W., Yin S.Y., Li Y.H., Zheng L.Y., Guo X., Ge X.N., Yang H.C. The 30-amino-acid deletion in the Nsp2 of highly pathogenic porcine reproductive and respiratory syndrome virus emerging in china is not related to its virulence. J. Virol. 2009, 83:5156-5167.
34. Zhou Y.J., Hao X.F., Tian Z.J., Tong G.Z., Yoo D., An T.Q., Zhou T., Li G.X., Qiu H.J., Wei T.C., Yuan X.F. Highly virulent procine reproductive and respiratory syndrome virus emerged in China. Transbound. Emerg. Dis. 2008, 55:152-164.