메뉴 건너뛰기




Volumn , Issue 68, 2012, Pages

Selective capture of 5-hydroxymethylcytosine from genomic DNA

Author keywords

5 hydroxymethylcytosine; Biophysics; Chemical labeling; Chemistry; Genetics; Genomic DNA; High throughput sequencing; Issue 68

Indexed keywords


EID: 84868266802     PISSN: 1940087X     EISSN: None     Source Type: Journal    
DOI: 10.3791/4441     Document Type: Article
Times cited : (4)

References (21)
  • 1
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: How the genome integrates intrinsic and environmental signals
    • Jaenisch, R. & Bird, A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat. Genet. 33 Suppl., 245-254 (2003).
    • (2003) Nat. Genet , vol.33 , Issue.SUPPL. , pp. 245-254
    • Jaenisch, R.1    Bird, A.2
  • 2
    • 77956189495 scopus 로고    scopus 로고
    • Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
    • Ito, S., et al. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature. 466, 1129-1133 (2010).
    • (2010) Nature , vol.466 , pp. 1129-1133
    • Ito, S.1
  • 3
    • 66149146320 scopus 로고    scopus 로고
    • Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
    • Tahiliani, M., et al. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science. 324, 930-935 (2009).
    • (2009) Science , vol.324 , pp. 930-935
    • Tahiliani, M.1
  • 4
    • 66149123748 scopus 로고    scopus 로고
    • The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain
    • Kriaucionis, S. & Heintz, N. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science. 324, 929-930 (2009).
    • (2009) Science , vol.324 , pp. 929-930
    • Kriaucionis, S.1    Heintz, N.2
  • 5
    • 78650175023 scopus 로고    scopus 로고
    • Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2
    • Ko, M., et al. Impaired hydroxylation of 5-methylcytosine in myeloid cancers with mutant TET2. Nature. 468, 839-843 (2010).
    • (2010) Nature , vol.468 , pp. 839-843
    • Ko, M.1
  • 6
    • 79551587102 scopus 로고    scopus 로고
    • Tet1 and tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
    • Koh, K.P., et al. Tet1 and tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. Cell Stem Cell. 8, 200-213 (2011).
    • (2011) Cell Stem Cell , vol.8 , pp. 200-213
    • Koh, K.P.1
  • 8
    • 79952713567 scopus 로고    scopus 로고
    • 5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming
    • Wossidlo, M., et al. 5-Hydroxymethylcytosine in the mammalian zygote is linked with epigenetic reprogramming. Nat. Commun. 2, 241 (2011).
    • (2011) Nat. Commun , vol.2 , pp. 241
    • Wossidlo, M.1
  • 9
    • 80053348585 scopus 로고    scopus 로고
    • The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
    • Gu, T.P., et al. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature. 477, 606-610 (2011).
    • (2011) Nature , vol.477 , pp. 606-610
    • Gu, T.P.1
  • 10
    • 79961139741 scopus 로고    scopus 로고
    • Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development
    • Dawlaty, M.M., et al. Tet1 is dispensable for maintaining pluripotency and its loss is compatible with embryonic and postnatal development. Cell Stem Cell. 9, 166-175 (2011).
    • (2011) Cell Stem Cell , vol.9 , pp. 166-175
    • Dawlaty, M.M.1
  • 11
    • 77749277177 scopus 로고    scopus 로고
    • The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing
    • Huang, Y., et al. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing. PLoS One. 5, e8888 (2010).
    • (2010) PLoS One , vol.5
    • Huang, Y.1
  • 12
    • 78651280460 scopus 로고    scopus 로고
    • Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine
    • Song, C.X., et al. Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine. Nat. Biotechnol. 29, 68-72 (2011).
    • (2011) Nat. Biotechnol , vol.29 , pp. 68-72
    • Song, C.X.1
  • 13
    • 79956308473 scopus 로고    scopus 로고
    • Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells
    • Pastor, W.A., et al. Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells. Nature. 473, 394-397 (2011).
    • (2011) Nature , vol.473 , pp. 394-397
    • Pastor, W.A.1
  • 14
  • 16
    • 84863042219 scopus 로고    scopus 로고
    • Biochemical characterization of recombinant β-glucosyltransferase and analysis of global 5-hydroxymethylcytosine in unique genomes
    • DOI: 10.1021/bi2014739 (2012)
    • Terragni, J., Bitinaite, J., Zheng, Y., & Pradhan, S. Biochemical characterization of recombinant β-glucosyltransferase and analysis of global 5-hydroxymethylcytosine in unique genomes. Biochemistry. DOI: 10.1021/bi2014739 (2012).
    • Biochemistry
    • Terragni, J.1    Bitinaite, J.2    Zheng, Y.3    Pradhan, S.4
  • 17
    • 0034687768 scopus 로고    scopus 로고
    • An unexpectedly high excision capacity for mispaired 5-hydroxymethyluracil in human cell extracts
    • Rusmintratip, V. & Sowers, L.C. An unexpectedly high excision capacity for mispaired 5-hydroxymethyluracil in human cell extracts. Proc. Natl. Acad. Sci. U.S.A. 97, 14183-14187 (2000).
    • (2000) Proc. Natl. Acad. Sci. U.S.A , vol.97 , pp. 14183-14187
    • Rusmintratip, V.1    Sowers, L.C.2
  • 18
    • 78650826181 scopus 로고    scopus 로고
    • Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates
    • Globisch, D., et al. Tissue distribution of 5-hydroxymethylcytosine and search for active demethylation intermediates. PLoS One. 5, e15367 (2010).
    • (2010) PLoS One , vol.5
    • Globisch, D.1
  • 19
    • 84455167621 scopus 로고    scopus 로고
    • Mbd3/NURD Complex Regulates Expression of 5-Hydroxymethylcytosine Marked Genes in Embryonic Stem Cells
    • Yildirim, O., et al. Mbd3/NURD Complex Regulates Expression of 5-Hydroxymethylcytosine Marked Genes in Embryonic Stem Cells. Cell. 147, 1498-1510 (2011).
    • (2011) Cell , vol.147 , pp. 1498-1510
    • Yildirim, O.1
  • 20
    • 79959859654 scopus 로고    scopus 로고
    • Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells
    • Szulwach, K.E., et al. Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells. PLoS Genet. 7, e1002154 (2011).
    • (2011) PLoS Genet , vol.7
    • Szulwach, K.E.1
  • 21
    • 82255192294 scopus 로고    scopus 로고
    • 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging
    • Szulwach, K.E., et al. 5-hmC-mediated epigenetic dynamics during postnatal neurodevelopment and aging. Nat. Neurosci. 14, 1607-1616 (2011).
    • (2011) Nat. Neurosci , vol.14 , pp. 1607-1616
    • Szulwach, K.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.