-
1
-
-
77949539786
-
Adaptive radiation in Coffea subgenus Coffea L. (Rubiaceae) in Africa and Madagascar
-
Anthony, F., L. Diniz, M. Combes, and P. Lashermes. 2010. Adaptive radiation in Coffea subgenus Coffea L. (Rubiaceae) in Africa and Madagascar. Plant Systematics and Evolution 285: 51-64.
-
(2010)
Plant Systematics and Evolution
, vol.285
, pp. 51-64
-
-
Anthony, F.1
Diniz, L.2
Combes, M.3
Lashermes, P.4
-
2
-
-
33847051947
-
The molecular ecologist's guide to expressed sequence tags
-
Bouck, A. and T. Vision. 2007. The molecular ecologist's guide to expressed sequence tags. Molecular Ecology 16: 907-924.
-
(2007)
Molecular Ecology
, vol.16
, pp. 907-924
-
-
Bouck, A.1
Vision, T.2
-
3
-
-
0000367652
-
The limits of amino acid sequence data in angiosperm phylogenetic reconstruction
-
Bremer, K. 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42: 795-803.
-
(1988)
Evolution
, vol.42
, pp. 795-803
-
-
Bremer, K.1
-
4
-
-
0036955214
-
Introgression of self-compatibility from Coffea heterocalyx to the cultivated species Coffea canephora
-
Coulibaly, I., M. Noirot, M. Lorieux, A. Charrier, S. Hamon, and J. Louarn. 2002. Introgression of self-compatibility from Coffea heterocalyx to the cultivated species Coffea canephora. Theoretical and Applied Genetics 105: 994-999.
-
(2002)
Theoretical and Applied Genetics
, vol.105
, pp. 994-999
-
-
Coulibaly, I.1
Noirot, M.2
Lorieux, M.3
Charrier, A.4
Hamon, S.5
Louarn, J.6
-
5
-
-
0031703778
-
First intergeneric hybrids (Psilanthus ebracteolatus Hiern x Coffea arabica L.) in coffee trees
-
Couturon, E., P. Lashermes, and A. Charrier. 1998. First intergeneric hybrids (Psilanthus ebracteolatus Hiern x Coffea arabica L.) in coffee trees. Canadian Journal of Botany 76: 542-546.
-
(1998)
Canadian Journal of Botany
, vol.76
, pp. 542-546
-
-
Couturon, E.1
Lashermes, P.2
Charrier, A.3
-
6
-
-
0029155194
-
Nuclear DNA content in the subgenus Coffea (Rubiaceae): Inter-and intra-specific variation in African species
-
Cros, J., M. Combes, N. Chabrillange, C. Duperray, A. Angles, and S. Hamon. 1995. Nuclear DNA content in the subgenus Coffea (Rubiaceae): inter-and intra-specific variation in African species. Canadian Journal of Botany 73: 14-20.
-
(1995)
Canadian Journal of Botany
, vol.73
, pp. 14-20
-
-
Cros, J.1
Combes, M.2
Chabrillange, N.3
Duperray, C.4
Angles, A.5
Hamon, S.6
-
7
-
-
0031989765
-
Phylogenetic analysis of chloroplast DNA variation in Coffea L
-
Cros, J., M. Combes, P. Trouslot, F. Anthony, S. Hamon, A. Charrier, and P. Lashermes. 1998. Phylogenetic analysis of chloroplast DNA variation in Coffea L. Molecular Phylogenetics and Evolution 9: 109-117.
-
(1998)
Molecular Phylogenetics and Evolution
, vol.9
, pp. 109-117
-
-
Cros, J.1
Combes, M.2
Trouslot, P.3
Anthony, F.4
Hamon, S.5
Charrier, A.6
Lashermes, P.7
-
8
-
-
39649107079
-
Diversity in coffee assessed with SSR markers: Structure of the genus Coffea and perspectives for breeding
-
Cubry, P., P. Musoli, H. Legnate, D. Pot, F. de Bellis, V. Poncet, F. Anthony, M. Dufour, and T. Leroy. 2008. Diversity in coffee assessed with SSR markers: structure of the genus Coffea and perspectives for breeding. Genome 51: 50-63.
-
(2008)
Genome
, vol.51
, pp. 50-63
-
-
Cubry, P.1
Musoli, P.2
Legnate, H.3
Pot, D.4
De Bellis, F.5
Poncet, V.6
Anthony, F.7
Dufour, M.8
Leroy, T.9
-
9
-
-
80052439029
-
Six species of Psilanthus transferred to Coffea (Coffeeae, Rubiaceae)
-
Davis, A. P. 2010. Six species of Psilanthus transferred to Coffea (Coffeeae, Rubiaceae). Phytotaxa 10: 41-45.
-
(2010)
Phytotaxa
, vol.10
, pp. 41-45
-
-
Davis, A.P.1
-
10
-
-
80052435119
-
Psilanthus mannii Hook f., the type species of Psilanthus Hook. f., transferred to Coffea L
-
Davis, A. P. 2011. Psilanthus mannii Hook. f., the type species of Psilanthus Hook. f., transferred to Coffea L. Nordic Journal of Botany 29: 471-472.
-
(2011)
Nordic Journal of Botany
, vol.29
, pp. 471-472
-
-
Davis, A.P.1
-
11
-
-
55649125254
-
A taxonomic revision of the baracoffea alliance: Nine remarkable Coffea species from western Madagascar
-
Davis, A. P. and F. Rakotonasolo. 2008. A taxonomic revision of the baracoffea alliance: nine remarkable Coffea species from western Madagascar. Botanical Journal of the Linnean Society 158: 355-390.
-
(2008)
Botanical Journal of the Linnean Society
, vol.158
, pp. 355-390
-
-
Davis, A.P.1
Rakotonasolo, F.2
-
12
-
-
77954471699
-
A reexamination of Coffea subgenus Baracoffea and comments on the morphology and classification of Coffea and Psilanthus (Rubiaceae-Coffeeae)
-
eds. Keating R., V. Hollowell, and T. Croat. St. Louis: Missouri Botanical Garden
-
Davis, A. P., D. Bridson, and F. Rakotonasolo. 2005. A reexamination of Coffea subgenus Baracoffea and comments on the morphology and classification of Coffea and Psilanthus (Rubiaceae-Coffeeae). Pp. 399-420 in A Festschrift for William G. D'Arcy: the legacy of a taxonomist, eds. Keating R., V. Hollowell, and T. Croat. St. Louis: Missouri Botanical Garden.
-
(2005)
A Festschrift for William G. D'Arcy: The Legacy of A Taxonomist
, pp. 399-420
-
-
Davis, A.P.1
Bridson, D.2
Rakotonasolo, F.3
-
13
-
-
33845523871
-
An annotated taxonomic conspectus of the genus Coffea (Rubiaceae)
-
Davis, A. P., R. Govaerts, D. Bridson, and P. Stoffelen. 2006. An annotated taxonomic conspectus of the genus Coffea (Rubiaceae). Botanical Journal of the Linnean Society 152: 465-512.
-
(2006)
Botanical Journal of the Linnean Society
, vol.152
, pp. 465-512
-
-
Davis, A.P.1
Govaerts, R.2
Bridson, D.3
Stoffelen, P.4
-
14
-
-
34250778457
-
Searching for the relatives of Coffea (Rubiaceae, Ixoroideae): The circumscription and phylogeny of Coffeeae based on plastid sequence data and morphology
-
Davis, A. P., M. Chester, O. Maurin, and M. Fay. 2007. Searching for the relatives of Coffea (Rubiaceae, Ixoroideae): the circumscription and phylogeny of Coffeeae based on plastid sequence data and morphology. American Journal of Botany 94: 313-329.
-
(2007)
American Journal of Botany
, vol.94
, pp. 313-329
-
-
Davis, A.P.1
Chester, M.2
Maurin, O.3
Fay, M.4
-
15
-
-
65949104284
-
A global assessment of distribution, diversity, endemism and taxonomic effort in the Rubiaceae
-
Davis, A. P., R. Govaerts, D. Bridson, R. Ruhsam, J. Moat, and N. Brummitt. 2009. A global assessment of distribution, diversity, endemism and taxonomic effort in the Rubiaceae. Annals of the Missouri Botanical Garden 96: 68-78.
-
(2009)
Annals of the Missouri Botanical Garden
, vol.96
, pp. 68-78
-
-
Davis, A.P.1
Govaerts, R.2
Bridson, D.3
Ruhsam, R.4
Moat, J.5
Brummitt, N.6
-
17
-
-
81855161777
-
Growing coffee: Psilanthus (Rubiaceae) subsumed on the basis of molecular and morphological data; Implications for the size, morphology, distribution and evolutionary history of Coffea
-
Davis, A. P., J. Tosh, N. Ruch, and M. Fay. 2011. Growing coffee: Psilanthus (Rubiaceae) subsumed on the basis of molecular and morphological data; implications for the size, morphology, distribution and evolutionary history of Coffea. Botanical Journal of the Linnean Society 167: 357-377.
-
(2011)
Botanical Journal of the Linnean Society
, vol.167
, pp. 357-377
-
-
Davis, A.P.1
Tosh, J.2
Ruch, N.3
Fay, M.4
-
18
-
-
84989432221
-
Testing the significance of incongruence
-
Farris, J. S., M. Kallersjo, A. G. Kluge, and C. Bult. 1994. Testing the significance of incongruence. Cladistics 10: 315-319.
-
(1994)
Cladistics
, vol.10
, pp. 315-319
-
-
Farris, J.S.1
Kallersjo, M.2
Kluge, A.G.3
Bult, C.4
-
19
-
-
68149124583
-
Current genetic differentiation of Coffea canephora Pierre ex A. Froehn in the Guineo-Congolian African zone: Cumulative impact of ancient climatic changes and recent human activities
-
Gomez, C., S. Dussert, P. Hamon, S. Hamon, A. de Kochko, and V. Poncet. 2009. Current genetic differentiation of Coffea canephora Pierre ex A. Froehn in the Guineo-Congolian African zone: cumulative impact of ancient climatic changes and recent human activities. BMC Evolutionary Biology 9: 167.
-
(2009)
BMC Evolutionary Biology
, vol.9
, pp. 167
-
-
Gomez, C.1
Dussert, S.2
Hamon, P.3
Hamon, S.4
De Kochko, A.5
Poncet, V.6
-
20
-
-
85027935281
-
Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae)
-
Hamon, P., P. Duroy, C. Dubreuil-Tranchant, P. Mafra D'Almeida Costa, C. Duret, N. Razafinarivo, E. Couturon, S. Hamon, A. de Kochko, V. Poncet, and R. Guyot. 2011. Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae). Molecular Genetics and Genomics 285: 447-460.
-
(2011)
Molecular Genetics and Genomics
, vol.285
, pp. 447-460
-
-
Hamon, P.1
Duroy, P.2
Dubreuil-Tranchant, C.3
Mafra D'almeida Costa, P.4
Duret, C.5
Razafinarivo, N.6
Couturon, E.7
Hamon, S.8
De Kochko, A.9
Poncet, V.10
Guyot, R.11
-
21
-
-
0033030765
-
Molecular characterisation and origin of the Coffea arabica L. genome
-
Lashermes, P., M. Combes, J. Robert, P. Trouslot, A. D'Hont, F. Anthony, and A. Charrier. 1999. Molecular characterisation and origin of the Coffea arabica L. genome. Molecular & General Genetics 261: 259-266.
-
(1999)
Molecular & General Genetics
, vol.261
, pp. 259-266
-
-
Lashermes, P.1
Combes, M.2
Robert, J.3
Trouslot, P.4
D'hont, A.5
Anthony, F.6
Charrier, A.7
-
22
-
-
0030964346
-
Phylogenetic relationships of coffee-tree species (Coffea L.) as inferred from ITS sequences of nuclear ribosomal DNA
-
Lashermes, P., M. Combes, P. Trouslot, and A. Charrier. 1997. Phylogenetic relationships of coffee-tree species (Coffea L.) as inferred from ITS sequences of nuclear ribosomal DNA. Theoretical and Applied Genetics 94: 947-955.
-
(1997)
Theoretical and Applied Genetics
, vol.94
, pp. 947-955
-
-
Lashermes, P.1
Combes, M.2
Trouslot, P.3
Charrier, A.4
-
23
-
-
0029852761
-
Inheritance and restriction fragment length polymorphism of chloroplast DNA in the genus Coffea L
-
Lashermes, P., J. Cros, M. Combes, P. Trouslot, F. Anthony, S. Hamon, and A. Charrier. 1996. Inheritance and restriction fragment length polymorphism of chloroplast DNA in the genus Coffea L. Theoretical and Applied Genetics 93: 626-632.
-
(1996)
Theoretical and Applied Genetics
, vol.93
, pp. 626-632
-
-
Lashermes, P.1
Cros, J.2
Combes, M.3
Trouslot, P.4
Anthony, F.5
Hamon, S.6
Charrier, A.7
-
24
-
-
28444494392
-
Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts
-
Lin, C., L. Mueller, J. McCarthy, D. Crouzillat, V. Petiard, and S. D. Tanksley. 2005. Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts. Theoretical and Applied Genetics 112: 114-130.
-
(2005)
Theoretical and Applied Genetics
, vol.112
, pp. 114-130
-
-
Lin, C.1
Mueller, L.2
McCarthy, J.3
Crouzillat, D.4
Petiard, V.5
Tanksley, S.D.6
-
25
-
-
34250323953
-
Introgressive hybridization between the allotetraploid Coffea arabica and one of its diploid ancestors, Coffea canephora, in an exceptional sympatric zone in New Caledonia
-
Mahe, L., D. Le Pierres, M. Combes, and P. Lashermes. 2007. Introgressive hybridization between the allotetraploid Coffea arabica and one of its diploid ancestors, Coffea canephora, in an exceptional sympatric zone in New Caledonia. Genome 50: 316-324.
-
(2007)
Genome
, vol.50
, pp. 316-324
-
-
Mahe, L.1
Le Pierres, D.2
Combes, M.3
Lashermes, P.4
-
26
-
-
36448946568
-
Towards a phylogeny for Coffea (Rubiaceae): Identifying well-supported lineages based on nuclear and plastid DNA sequences
-
Maurin, O., A. P. Davis, M. Chester, E. F. Mvungi, Y. Jaufeerally-Fakim, and M. F. Fay. 2007. Towards a phylogeny for Coffea (Rubiaceae): Identifying well-supported lineages based on nuclear and plastid DNA sequences. Annals of Botany 100: 1565-1583.
-
(2007)
Annals of Botany
, vol.100
, pp. 1565-1583
-
-
Maurin, O.1
Davis, A.P.2
Chester, M.3
Mvungi, E.F.4
Jaufeerally-Fakim, Y.5
Fay, M.F.6
-
27
-
-
27244454556
-
The SOL Genomics Network. A comparative resource for Solanaceae biology and beyond
-
Mueller, L., T. H. Solow, N. Taylor, B. Skwarecki, R. Buels, J. Binns, C. Lin, M. Wright, R. Ahrens, Y. Wang, E. Herbst, E. Keyder, N. Menda, D. Zamir, and S. D. Tanksley. 2005. The SOL Genomics Network. A comparative resource for Solanaceae biology and beyond. Plant Physiology 138: 1310-1317.
-
(2005)
Plant Physiology
, vol.138
, pp. 1310-1317
-
-
Mueller, L.1
Solow, T.H.2
Taylor, N.3
Skwarecki, B.4
Buels, R.5
Binns, J.6
Lin, C.7
Wright, M.8
Ahrens, R.9
Wang, Y.10
Herbst, E.11
Keyder, E.12
Menda, N.13
Zamir, D.14
Tanksley, S.D.15
-
28
-
-
0019321718
-
Rapid isolation of high molecular weight plant DNA
-
Murray, M. G. and W. F. Thompson. 1980. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Research 8: 4321-4326.
-
(1980)
Nucleic Acids Research
, vol.8
, pp. 4321-4326
-
-
Murray, M.G.1
Thompson, W.F.2
-
29
-
-
34447109129
-
Genetic basis of species differentiation between Coffea liberica Hiern and C. canephora Pierre: Analysis of an interspecific cross
-
N'Diaye, A., M. Noirot, S. Hamon, and V. Poncet. 2007. Genetic basis of species differentiation between Coffea liberica Hiern and C. canephora Pierre: analysis of an interspecific cross. Genetic Resources and Crop Evolution 54: 1011-1021.
-
(2007)
Genetic Resources and Crop Evolution
, vol.54
, pp. 1011-1021
-
-
N'diaye, A.1
Noirot, M.2
Hamon, S.3
Poncet, V.4
-
30
-
-
79959468400
-
Expression and trans-specific polymorphism of self-incompatibility RNases in Coffea (Rubiaceae)
-
doi: 10.1371/journal. pone.0021019
-
Nowak, M. D., A. P. Davis, F. Anthony, and A. D. Yoder. 2011. Expression and trans-specific polymorphism of self-incompatibility RNases in Coffea (Rubiaceae). PLoS ONE 6: e21019, doi: 10.1371/journal. pone.0021019.
-
(2011)
PLoS ONE
, vol.6
-
-
Nowak, M.D.1
Davis, A.P.2
Anthony, F.3
Yoder, A.D.4
-
31
-
-
22944456598
-
-
Program distributed by the author. Uppsala: Evolutionary Biology Centre, Uppsala University
-
Nylander, J. A. A. 2004. MrModeltest v2. Program distributed by the author. Uppsala: Evolutionary Biology Centre, Uppsala University.
-
(2004)
MrModeltest v2
-
-
Nylander, J.A.A.1
-
32
-
-
0030069248
-
RAPD and organelle specific PCR re-affirms taxonomic relationships within the genus Coffea
-
Orozco-Castillo, C., K. Chalmers, W. Powell, and R. Waugh. 1996. RAPD and organelle specific PCR re-affirms taxonomic relationships within the genus Coffea. Plant Cell Reports 15: 337-341.
-
(1996)
Plant Cell Reports
, vol.15
, pp. 337-341
-
-
Orozco-Castillo, C.1
Chalmers, K.2
Powell, W.3
Waugh, R.4
-
33
-
-
0032431121
-
In situ hybridization identifies the diploid progenitor species of Coffea arabica (Rubiaceae)
-
Raina, S. N., Y. Mukai, and M. Yamamoto. 1998. In situ hybridization identifies the diploid progenitor species of Coffea arabica (Rubiaceae). Theoretical and Applied Genetics 97: 1204-1209.
-
(1998)
Theoretical and Applied Genetics
, vol.97
, pp. 1204-1209
-
-
Raina, S.N.1
Mukai, Y.2
Yamamoto, M.3
-
35
-
-
0041386108
-
MRBAYES 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F. and J. P. Huelsenbeck. 2003. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
36
-
-
33847195053
-
The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: Organization and implications for biotechnology and phylogenetic relationships amongst angiosperms
-
Samson, N., M. Bausher, S. Lee, R. Jansen, and H. Daniell. 2007. The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms. Plant Biotechnology Journal 5: 339-353.
-
(2007)
Plant Biotechnology Journal
, vol.5
, pp. 339-353
-
-
Samson, N.1
Bausher, M.2
Lee, S.3
Jansen, R.4
Daniell, H.5
-
38
-
-
77954202497
-
DendroPy: A Python library for phylogenetic computing
-
Sukumaran, J. and M. T. Holder. 2010. DendroPy: A Python library for phylogenetic computing. Bioinformatics 26: 1569-1571.
-
(2010)
Bioinformatics
, vol.26
, pp. 1569-1571
-
-
Sukumaran, J.1
Holder, M.T.2
-
39
-
-
63149145445
-
Coffea anthonyi, a new self-compatible Central African coffee species, closely related to an ancestor of Coffea arabica
-
Stoffelen, P., M. Noirot, E. Couturon, S. Bontems, P. De Block, and F. Anthony. 2009. Coffea anthonyi, a new self-compatible Central African coffee species, closely related to an ancestor of Coffea arabica. Taxon 58: 133-140.
-
(2009)
Taxon
, vol.58
, pp. 133-140
-
-
Stoffelen, P.1
Noirot, M.2
Couturon, E.3
Bontems, S.4
De Block, P.5
Anthony, F.6
-
42
-
-
65949111064
-
Phylogeny of Tricalysia (Rubiaceae) and its relationships with allied genera based on plastid DNA data: Resurrection of the genus Empogona
-
Tosh, J., A. P. Davis, S. Dessein, P. De Block, S. Huysmans, M. Fay, E. Smets, and E. Robbrecht. 2009. Phylogeny of Tricalysia (Rubiaceae) and its relationships with allied genera based on plastid DNA data: resurrection of the genus Empogona. Annals of the Missouri Botanical Garden 96: 194-213.
-
(2009)
Annals of the Missouri Botanical Garden
, vol.96
, pp. 194-213
-
-
Tosh, J.1
Davis, A.P.2
Dessein, S.3
De Block, P.4
Huysmans, S.5
Fay, M.6
Smets, E.7
Robbrecht, E.8
-
43
-
-
0000162362
-
Phylogenetic incongruence: Window into genome history and molecular evolution
-
eds. D. E. Soltis, P. S. Soltis, and J. J. Doyle. Berlin: Kluwer Academic Publishers
-
Wendel, J. and J. Doyle. 1998. Phylogenetic incongruence: window into genome history and molecular evolution. PP. 265-295 in Molecular systematics of plants 2, eds. D. E. Soltis, P. S. Soltis, and J. J. Doyle. Berlin: Kluwer Academic Publishers.
-
(1998)
Molecular Systematics of Plants 2
, pp. 265-295
-
-
Wendel, J.1
Doyle, J.2
-
44
-
-
0000486621
-
The Guineo-Congolian Region and its relationships to other phytochoria
-
White, F. 1979. The Guineo-Congolian Region and its relationships to other phytochoria. Bulletin du Jardin Botanique National de Belgique 49: 11-55.
-
(1979)
Bulletin du Jardin Botanique National de Belgique
, vol.49
, pp. 11-55
-
-
White, F.1
-
46
-
-
33751344142
-
Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: A test case in the Euasterid plant clade
-
Wu, F., L. Mueller, D. Crouzillat, V. Petiard, and S. D. Tanksley. 2006. Combining bioinformatics and phylogenetics to identify large sets of single-copy orthologous genes (COSII) for comparative, evolutionary and systematic studies: a test case in the Euasterid plant clade. Genetics 174: 1407-1420.
-
(2006)
Genetics
, vol.174
, pp. 1407-1420
-
-
Wu, F.1
Mueller, L.2
Crouzillat, D.3
Petiard, V.4
Tanksley, S.D.5
-
47
-
-
33845390384
-
Has vicariance or dispersal been the predominant biogeographic force in Madagascar? only time will tell
-
Yoder, A. D. and M. D. Nowak. 2006. Has vicariance or dispersal been the predominant biogeographic force in Madagascar? Only time will tell. Annual Review of Ecology Evolution and Systematics 37: 405-431.
-
(2006)
Annual Review of Ecology Evolution and Systematics
, vol.37
, pp. 405-431
-
-
Yoder, A.D.1
Nowak, M.D.2
|