메뉴 건너뛰기




Volumn 7, Issue 10, 2012, Pages

Development, Characterization and Experimental Validation of a Cultivated Sunflower (Helianthus annuus L.) Gene Expression Oligonucleotide Microarray

(18)  Fernandez, Paula a,f,g   Soria, Marcelo b   Blesa, David c   DiRienzo, Julio d   Moschen, Sebastian a,e   Rivarola, Maximo f   Clavijo, Bernardo Jose a   Gonzalez, Sergio b   Peluffo, Lucila f   Príncipi, Dario f   Dosio, Guillermo e,f   Aguirrezabal, Luis e,f   García García, Francisco c   Conesa, Ana c   Hopp, Esteban a,b   Dopazo, Joaquín c   Heinz, Ruth Amelia a,b,f   Paniego, Norma a,f  


Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; CONTIG MAPPING; CONTROLLED STUDY; CROP IMPROVEMENT; DNA MICROARRAY; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HELIANTHUS ANNUUS; MOLECULAR PROBE; NONHUMAN; PLANT BREEDING; PLANT GENETICS; REAL TIME POLYMERASE CHAIN REACTION; SENESCENCE; SEQUENCE ANALYSIS; SPECIES CULTIVATION; VALIDATION STUDY; WATER DEFICIT; WATER STRESS;

EID: 84868098352     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0045899     Document Type: Article
Times cited : (28)

References (69)
  • 1
    • 84868136702 scopus 로고    scopus 로고
    • Future Prospects
    • In: Hu J, Seiler G, Kole C, editors, Enfield, NH: Science Publishers
    • Vick BA, Hu J (2010) Future Prospects. In: Hu J, Seiler G, Kole C, editors. Genetics, Genomics and Breeding of Sunflower. Enfield, NH: Science Publishers. pp. 313-326.
    • (2010) Genetics, Genomics and Breeding of Sunflower , pp. 313-326
    • Vick, B.A.1    Hu, J.2
  • 3
    • 85049721562 scopus 로고    scopus 로고
    • Basic information
    • In: Hu J, Seiler GJ, Kole C, editors, Enfield, NH.: Science Publishers
    • Seiler GJ, Jan CC (2010) Basic information. In: Hu J, Seiler GJ, Kole C, editors. Genetics, Genomics, and Breeding of Sunflower. Enfield, NH.: Science Publishers. pp. 2-50.
    • (2010) Genetics, Genomics, and Breeding of Sunflower , pp. 2-50
    • Seiler, G.J.1    Jan, C.C.2
  • 5
    • 79961230602 scopus 로고    scopus 로고
    • Progress towards a reference genome for sunflower
    • Kane NC, Gill N, King MJ, Bowers JE, Berges H, et al. (2011) Progress towards a reference genome for sunflower. Botany 89: 429-437.
    • (2011) Botany , vol.89 , pp. 429-437
    • Kane, N.C.1    Gill, N.2    King, M.J.3    Bowers, J.E.4    Berges, H.5
  • 6
    • 33645239150 scopus 로고    scopus 로고
    • Primary metabolic pathways and signal transduction in sunflower (Helianthus annuus L.): comparison of transcriptional profiling in leaves and immature embryos using cDNA microarrays
    • Hewezi T, Petitprez M, Gentzbittel L, (2006) Primary metabolic pathways and signal transduction in sunflower (Helianthus annuus L.): comparison of transcriptional profiling in leaves and immature embryos using cDNA microarrays. Planta 223: 948-964.
    • (2006) Planta , vol.223 , pp. 948-964
    • Hewezi, T.1    Petitprez, M.2    Gentzbittel, L.3
  • 7
    • 33645821031 scopus 로고    scopus 로고
    • A cDNA microarray approach to decipher sunflower (Helianthus annuus) responses to the necrotrophic fungus Phoma macdonaldii
    • Alignan M, Hewezi T, Petitprez M, Dechamp-Guillaume G, Gentzbittel L, (2006) A cDNA microarray approach to decipher sunflower (Helianthus annuus) responses to the necrotrophic fungus Phoma macdonaldii. New Phytol 170: 523-536.
    • (2006) New Phytol , vol.170 , pp. 523-536
    • Alignan, M.1    Hewezi, T.2    Petitprez, M.3    Dechamp-Guillaume, G.4    Gentzbittel, L.5
  • 8
    • 33749034733 scopus 로고    scopus 로고
    • Transcriptional profiling of sunflower plants growing under low temperatures reveals an extensive down-regulation of gene expression associated with chilling sensitivity
    • Hewezi T, Leger M, El Kayal W, Gentzbittel L, (2006) Transcriptional profiling of sunflower plants growing under low temperatures reveals an extensive down-regulation of gene expression associated with chilling sensitivity. J Exp Bot 57: 3109-3122.
    • (2006) J Exp Bot , vol.57 , pp. 3109-3122
    • Hewezi, T.1    Leger, M.2    El Kayal, W.3    Gentzbittel, L.4
  • 9
    • 34447137406 scopus 로고    scopus 로고
    • Transcriptional profiles of primary metabolism and signal transduction-related genes in response to water stress in field-grown sunflower genotypes using a thematic cDNA microarray
    • DOI: 10.1007/s00425-007-0508-0
    • Roche J, Hewezi T, Bouniols A, Gentzbittel L, (2007) Transcriptional profiles of primary metabolism and signal transduction-related genes in response to water stress in field-grown sunflower genotypes using a thematic cDNA microarray. Planta DOI10.1007/s00425-007-0508-0.
    • (2007) Planta
    • Roche, J.1    Hewezi, T.2    Bouniols, A.3    Gentzbittel, L.4
  • 10
    • 40549104121 scopus 로고    scopus 로고
    • Transcriptomic identification of candidate genes involved in sunflower responses to chilling and salt stresses based on cDNA microarray analysis
    • Fernandez P, Di Rienzo JA, Fernandez L, Hopp H, Paniego N, et al. (2008) Transcriptomic identification of candidate genes involved in sunflower responses to chilling and salt stresses based on cDNA microarray analysis. BMC Plant Biology 8.
    • (2008) BMC Plant Biology , vol.8
    • Fernandez, P.1    Di Rienzo, J.A.2    Fernandez, L.3    Hopp, H.4    Paniego, N.5
  • 11
    • 33645503260 scopus 로고    scopus 로고
    • Microarray analysis reveals differential gene expression in hybrid sunflower species
    • Lai Z, Gross BL, Zou Y, Andrews J, Rieseberg LH, (2006) Microarray analysis reveals differential gene expression in hybrid sunflower species. Mol Ecol 15: 1213-1227.
    • (2006) Mol Ecol , vol.15 , pp. 1213-1227
    • Lai, Z.1    Gross, B.L.2    Zou, Y.3    Andrews, J.4    Rieseberg, L.H.5
  • 12
    • 55749086039 scopus 로고    scopus 로고
    • Natural variation in gene expression between wild and weedy populations of Helianthus annuus
    • Lai Z, Kane NC, Zou Y, Rieseberg LH, (2008) Natural variation in gene expression between wild and weedy populations of Helianthus annuus. Genetics 179: 1881-1890.
    • (2008) Genetics , vol.179 , pp. 1881-1890
    • Lai, Z.1    Kane, N.C.2    Zou, Y.3    Rieseberg, L.H.4
  • 13
    • 78650608472 scopus 로고    scopus 로고
    • Nitrogen stress response of a hybrid species: a gene expression study
    • Brouillette LC, Donovan LA, (2011) Nitrogen stress response of a hybrid species: a gene expression study. Annals of Botany 107: 101-108.
    • (2011) Annals of Botany , vol.107 , pp. 101-108
    • Brouillette, L.C.1    Donovan, L.A.2
  • 15
    • 73549097520 scopus 로고    scopus 로고
    • DNA Chip Analysis in Diverse Organisms with Unsequenced Genomes
    • Nazar NR, Chen P, Dean D, Robb J, (2010) DNA Chip Analysis in Diverse Organisms with Unsequenced Genomes. Mol Biotechnol 44: 8-13.
    • (2010) Mol Biotechnol , vol.44 , pp. 8-13
    • Nazar, N.R.1    Chen, P.2    Dean, D.3    Robb, J.4
  • 16
    • 77951536159 scopus 로고    scopus 로고
    • High-throughput marker discovery in melon using a self-designed oligo microarray
    • Ophir R, Eshed R, Harel-Beja R, Tzuri G, Portnoy V, et al. (2010) High-throughput marker discovery in melon using a self-designed oligo microarray. BMC Genomics 11: 269.
    • (2010) BMC Genomics , vol.11 , pp. 269
    • Ophir, R.1    Eshed, R.2    Harel-Beja, R.3    Tzuri, G.4    Portnoy, V.5
  • 17
  • 19
    • 84877009541 scopus 로고    scopus 로고
    • NSF Rice Oligonucleotide Array Project. Available. Accessed 2010 Aug 10
    • NSF Rice Oligonucleotide Array Project. Available: http://www.ricearray.org. Accessed 2010 Aug 10.
  • 20
    • 84877007806 scopus 로고    scopus 로고
    • Maize Oligonucleotide Array Project. Available. Accessed 2010 Aug 10
    • Maize Oligonucleotide Array Project. Available: http://www.maizearray.org. Accessed 2010 Aug 10.
  • 21
    • 77958047004 scopus 로고    scopus 로고
    • Development and validation of a flax (Linum usitatissimum L.) gene expression oligo microarray
    • Fenart S, Assoumou Ndong Y-P, Duarte J, Rivière N, Wilmer J, et al. (2010) Development and svalidation of a flax (Linum usitatissimum L.) gene expression oligo microarray. BMC Genomics 11.
    • (2010) BMC Genomics , vol.11
    • Fenart, S.1    Assoumou, N.Y.-P.2    Duarte, J.3    Rivière, N.4    Wilmer, J.5
  • 23
    • 70449622898 scopus 로고    scopus 로고
    • An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.)
    • Mascarrell-Creus A, Cañizares J, Vilarrasa-Blasi J, Mora-Garcia S, Blanca J, et al. (2009) An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.). BMC Genomics 10.
    • (2009) BMC Genomics , vol.10
    • Mascarrell-Creus, A.1    Cañizares, J.2    Vilarrasa-Blasi, J.3    Mora-Garcia, S.4    Blanca, J.5
  • 24
    • 78650779481 scopus 로고    scopus 로고
    • The 'PUCE CAFE' Project: the first 15 K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits
    • Privat I, Bardil A, Gomez AB, Severac D, Dantec C, et al. (2011) The 'PUCE CAFE' Project: the first 15 K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits. BMC Genomics 12: 5.
    • (2011) BMC Genomics , vol.12 , pp. 5
    • Privat, I.1    Bardil, A.2    Gomez, A.B.3    Severac, D.4    Dantec, C.5
  • 25
    • 64749090107 scopus 로고    scopus 로고
    • Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing
    • Trick M, Long Y, Meng J, Bancroft I, (2009) Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napus using Solexa transcriptome sequencing. Plant Biotechnol J 7: 334-346.
    • (2009) Plant Biotechnol J , vol.7 , pp. 334-346
    • Trick, M.1    Long, Y.2    Meng, J.3    Bancroft, I.4
  • 26
  • 27
    • 65349101937 scopus 로고    scopus 로고
    • A novel transcriptomic approach to identify candidate genes for grain quality traits in wheat
    • Wan Y, Underwood C, Toole G, Skeggs P, Zhu T, et al. (2009) A novel transcriptomic approach to identify candidate genes for grain quality traits in wheat. Plant Biotechnol J 7: 401-410.
    • (2009) Plant Biotechnol J , vol.7 , pp. 401-410
    • Wan, Y.1    Underwood, C.2    Toole, G.3    Skeggs, P.4    Zhu, T.5
  • 28
    • 80053914535 scopus 로고    scopus 로고
    • BRAD, the genetics and genomics database for Brassica plants
    • Cheng F, Liu S, Wu J, Fang L, Sun S, et al. (2011) BRAD, the genetics and genomics database for Brassica plants. BMC Plant Biology 11: 136.
    • (2011) BMC Plant Biology , vol.11 , pp. 136
    • Cheng, F.1    Liu, S.2    Wu, J.3    Fang, L.4    Sun, S.5
  • 29
    • 84877010017 scopus 로고    scopus 로고
    • Tomato Functional Genomics Database. Available. Accessed 2010 Aug 10
    • Tomato Functional Genomics Database. Available: http://ted.bti.cornell.edu/. Accessed 2010 Aug 10.
  • 30
    • 84863338264 scopus 로고    scopus 로고
    • Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression
    • Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, et al. (2012) Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression. Am J Bot 99: 209-218.
    • (2012) Am J Bot , vol.99 , pp. 209-218
    • Lai, Z.1    Kane, N.C.2    Kozik, A.3    Hodgins, K.A.4    Dlugosch, K.M.5
  • 31
    • 79960854562 scopus 로고    scopus 로고
    • Targeted mRNA oxidation regulates sunflower seed dormancy alleviation during dry after-ripening
    • Bazin J, Langlade N, Vincourt P, Arribat S, Balzergue S, et al. (2011) Targeted mRNA oxidation regulates sunflower seed dormancy alleviation during dry after-ripening. Plant Cell 23: 2196-2208.
    • (2011) Plant Cell , vol.23 , pp. 2196-2208
    • Bazin, J.1    Langlade, N.2    Vincourt, P.3    Arribat, S.4    Balzergue, S.5
  • 32
    • 84855413798 scopus 로고    scopus 로고
    • SNP discovery and development of a high-density genotyping array for sunflower
    • Bachlava E, Taylor CA, Tang S, Bowers JE, Mandel JR, et al. (2012) SNP discovery and development of a high-density genotyping array for sunflower. PLoS ONE 7: e29814.
    • (2012) PLoS ONE , vol.7
    • Bachlava, E.1    Taylor, C.A.2    Tang, S.3    Bowers, J.E.4    Mandel, J.R.5
  • 33
    • 3543068702 scopus 로고    scopus 로고
    • Microarray platforms-comparisons and contrasts
    • Hardiman G, (2004) Microarray platforms-comparisons and contrasts. Pharmacogenomics 5: 487-502.
    • (2004) Pharmacogenomics , vol.5 , pp. 487-502
    • Hardiman, G.1
  • 34
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • Huang X, Madan A, (1999) CAP3: A DNA sequence assembly program. Genome Res 9: 868-877.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 35
    • 79960453749 scopus 로고    scopus 로고
    • Development and Experimental Validation of a 20 K Atlantic Cod (Gadus morhua) Oligonucleotide Microarray Based on a Collection of over 150,000 ESTs
    • DOI:10.1007/s10126-010-9335-6
    • Booman M, Borza T, Feng CY, Hori TS, Higgins B, et al. (2010) Development and Experimental Validation of a 20 K Atlantic Cod (Gadus morhua) Oligonucleotide Microarray Based on a Collection of over 150,000 ESTs. Mar Biotechnol DOI:10.1007/s10126-010-9335-6.
    • (2010) Mar Biotechnol
    • Booman, M.1    Borza, T.2    Feng, C.Y.3    Hori, T.S.4    Higgins, B.5
  • 37
    • 66149142707 scopus 로고    scopus 로고
    • A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences
    • Trick M, Cheung F, Drou N, Fraser F, Lobenhofer EK, et al. (2009) A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences. BMC Plant Biology 9.
    • (2009) BMC Plant Biology , vol.9
    • Trick, M.1    Cheung, F.2    Drou, N.3    Fraser, F.4    Lobenhofer, E.K.5
  • 38
    • 0033642068 scopus 로고    scopus 로고
    • EST databases as multi-conditional gene expression datasets
    • Ewing RM, Claverie JM, (2000) EST databases as multi-conditional gene expression datasets. Pac Symp Biocomput pp. 430-442.
    • (2000) Pac Symp Biocomput , pp. 430-442
    • Ewing, R.M.1    Claverie, J.M.2
  • 39
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie JM, (1997) The significance of digital gene expression profiles. Genome Research 7: 986-995.
    • (1997) Genome Research , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.M.2
  • 40
    • 84877007773 scopus 로고    scopus 로고
    • Sunflower Unigene Resource (SUR v1.0). Available: Accessed 2012 Sept 29
    • Sunflower Unigene Resource (SUR v1.0). Available: http://atgc-sur.inta.gob.ar. Accessed 2012 Sept 29.
  • 41
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5
  • 44
    • 48249125753 scopus 로고    scopus 로고
    • High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome
    • Novaes E, Drost D, Farmerie W, Pappas G, Grattapaglia D, et al. (2008) High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome. BMC Genomics 9: 312.
    • (2008) BMC Genomics , vol.9 , pp. 312
    • Novaes, E.1    Drost, D.2    Farmerie, W.3    Pappas, G.4    Grattapaglia, D.5
  • 45
    • 9144230726 scopus 로고    scopus 로고
    • Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses
    • Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, et al. (2003) Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol 133: 1755-1767.
    • (2003) Plant Physiol , vol.133 , pp. 1755-1767
    • Rabbani, M.A.1    Maruyama, K.2    Abe, H.3    Khan, M.A.4    Katsura, K.5
  • 46
    • 18344396568 scopus 로고    scopus 로고
    • Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
    • Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, et al. (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29: 365-371.
    • (2001) Nat Genet , vol.29 , pp. 365-371
    • Brazma, A.1    Hingamp, P.2    Quackenbush, J.3    Sherlock, G.4    Spellman, P.5
  • 47
    • 78650747259 scopus 로고    scopus 로고
    • Comparison of predictive methods and biological validation for qPCR reference genes in sunflower leaf senescence transcript analysis
    • Fernandez P, Di Rienzo JA, Moschen S, Dosio GAA, Aguirrezabal LAN, et al. (2011) Comparison of predictive methods and biological validation for qPCR reference genes in sunflower leaf senescence transcript analysis. Plant Cell Report 30: 63-74.
    • (2011) Plant Cell Report , vol.30 , pp. 63-74
    • Fernandez, P.1    Di Rienzo, J.A.2    Moschen, S.3    Dosio, G.A.A.4    Aguirrezabal, L.A.N.5
  • 49
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Smyth G, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.1
  • 50
    • 0034069495 scopus 로고    scopus 로고
    • Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
    • Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, et al. (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29.
    • (2000) Nat Genet , vol.25 , pp. 25-29
    • Ashburner, M.1    Ball, C.A.2    Blake, J.A.3    Botstein, D.4    Butler, H.5
  • 51
    • 21444445084 scopus 로고    scopus 로고
    • BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments
    • Al-Shahrour F, Minguez P, Vaquerizas JM, Conde L, Dopazo J, (2005) BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments. Nucleic Acids Res 33: W460-464.
    • (2005) Nucleic Acids Res , vol.33
    • Al-Shahrour, F.1    Minguez, P.2    Vaquerizas, J.M.3    Conde, L.4    Dopazo, J.5
  • 52
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • 2001
    • Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acid Research 29: e45 2001.
    • (2001) Nucleic Acid Research , vol.29
    • Pfaffl, M.W.1
  • 53
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena M, Shalon D, Davis RW, Brown PO, (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467-470.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 54
    • 10244219858 scopus 로고    scopus 로고
    • Accessing genetic information with high-density DNA arrays
    • Chee M, Yang R, Hubbell E, Berno A, Huang XC, et al. (1996) Accessing genetic information with high-density DNA arrays. Science 274: 610-614.
    • (1996) Science , vol.274 , pp. 610-614
    • Chee, M.1    Yang, R.2    Hubbell, E.3    Berno, A.4    Huang, X.C.5
  • 55
    • 13244287832 scopus 로고    scopus 로고
    • Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information
    • Chen YA, Mckillen DJ, Wu S, Jenny MJ, Chapman R, et al. (2004) Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information. BMC Bioinformatics 5.
    • (2004) BMC Bioinformatics , vol.5
    • Chen, Y.A.1    Mckillen, D.J.2    Wu, S.3    Jenny, M.J.4    Chapman, R.5
  • 56
    • 33644871376 scopus 로고    scopus 로고
    • Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems: practical considerations and perspectives
    • Clarke JD, Zhu T, (2006) Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems: practical considerations and perspectives. Plant J 45: 630-650.
    • (2006) Plant J , vol.45 , pp. 630-650
    • Clarke, J.D.1    Zhu, T.2
  • 57
  • 58
    • 0027249595 scopus 로고
    • dbEST-database for "expressed sequence tags"
    • Boguski MS, Lowe TM, Tolstoshev CM, (1993) dbEST-database for "expressed sequence tags". Nat Genet 4: 332-333.
    • (1993) Nat Genet , vol.4 , pp. 332-333
    • Boguski, M.S.1    Lowe, T.M.2    Tolstoshev, C.M.3
  • 59
    • 28244492964 scopus 로고    scopus 로고
    • Microarray expression profiling resources for plant genomics
    • Rensink WA, Buell R, (2005) Microarray expression profiling resources for plant genomics. Trends in Plant Science 10: 1360-1385.
    • (2005) Trends in Plant Science , vol.10 , pp. 1360-1385
    • Rensink, W.A.1    Buell, R.2
  • 60
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, Tamayo P, Mootha VK, Mukherjee S, Ebert BL, et al. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci U S A 102: 15545-15550.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 15545-15550
    • Subramanian, A.1    Tamayo, P.2    Mootha, V.K.3    Mukherjee, S.4    Ebert, B.L.5
  • 61
    • 40449141576 scopus 로고    scopus 로고
    • Characterization of a newly developed chicken 44 K Agilent microarray
    • Li X, Chiang H-I, Zhu J, Dowd SE, Zhou H, (2008) Characterization of a newly developed chicken 44 K Agilent microarray. BMC Genomics 9: 60.
    • (2008) BMC Genomics , vol.9 , pp. 60
    • Li, X.1    Chiang, H.-I.2    Zhu, J.3    Dowd, S.E.4    Zhou, H.5
  • 62
    • 20244377239 scopus 로고    scopus 로고
    • Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies
    • Forment J, Gadea J, Huerta L, Abizanda J, Agusti S, et al. (2005) Development of a citrus genome-wide EST collection and cDNA microarray as resources for genomic studies. Plant Molecular Biology 57: 375-391.
    • (2005) Plant Molecular Biology , vol.57 , pp. 375-391
    • Forment, J.1    Gadea, J.2    Huerta, L.3    Abizanda, J.4    Agusti, S.5
  • 63
    • 53849112948 scopus 로고    scopus 로고
    • SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility
    • Heesacker A, Kishore VK, Gao W, Tang S, Kolkman JM, et al. (2008) SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility. Theor Appl Genet 117: 1021-1029.
    • (2008) Theor Appl Genet , vol.117 , pp. 1021-1029
    • Heesacker, A.1    Kishore, V.K.2    Gao, W.3    Tang, S.4    Kolkman, J.M.5
  • 65
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice P, Longden I, Bleasby A, (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics 16: 276-277.
    • (2000) Trends in Genetics , vol.16 , pp. 276-277
    • Rice, P.1    Longden, I.2    Bleasby, A.3
  • 66
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP, (2003) A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19: 185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 68
    • 64549150047 scopus 로고    scopus 로고
    • Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data
    • Ruijter J, Ramakers C, Hoogaars W, Karlen Y, Bakker O, et al. (2009) Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data. Nucl Acids Res 37: e45.
    • (2009) Nucl Acids Res , vol.37
    • Ruijter, J.1    Ramakers, C.2    Hoogaars, W.3    Karlen, Y.4    Bakker, O.5
  • 69
    • 84868136699 scopus 로고    scopus 로고
    • Facultad de Ciencias Agropecuarias, Universidad Nacional de Córdoba, Argentina. Available, Accessed 2012 Aug 27
    • Di Rienzo JA (2009) fgStatistics. Facultad de Ciencias Agropecuarias, Universidad Nacional de Córdoba, Argentina. Available: http://sitesgooglecom/site/fgstatistics. Accessed 2012 Aug 27.
    • (2009) fgStatistics
    • Di Rienzo, J.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.