DNA chip analysis in diverse organisms with unsequenced genomes

Molecular Biotechnology

Volumn 44, Issue 1, 2010, Pages 8-13

  Nazar, Ross N ^a   Chen, Ping ^a   Dean, Doug ^a   Robb, Jane ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

Biodiversity; Gene expression; Genome

Indexed keywords

APPLIED RESEARCH; BASIC RESEARCH; BIOLOGICAL INFORMATION; CDNA SEQUENCE; DNA CHIP; DNA MICRO-ARRAY; GENETIC CHANGES; INDISPENSABLE TOOLS; MICRO-ARRAY CHIPS; MOLECULAR APPROACH; SEQUENCE DATA; TARGET ORGANISM; TRANSCRIPTOMES;

BIOACTIVITY; BIOCHIPS; BIODIVERSITY; DNA; GENE EXPRESSION; MINING; PROBES;

BIOASSAY;

COMPLEMENTARY DNA; TRANSCRIPTOME;

ARTICLE; BIODIVERSITY; BIOTECHNOLOGY; COST; DNA MICROARRAY; GENE EXPRESSION; GENE SEQUENCE; GENOME; MICROBIAL GENETICS; NONHUMAN;

DNA; GENE EXPRESSION PROFILING; GENOME, HUMAN; GENOME, PLANT; HUMANS; LYCOPERSICON ESCULENTUM; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPECIES SPECIFICITY;

EID: 73549097520     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12033-009-9212-6     Document Type: Article

References (25)

1. RB Stoughton 2005 Application of DNA microarrays in biology Annual Review of Biochemistry 74 53 82 10.1146/annurev.biochem.74.082803.133212 1:CAS:528:DC%2BD2MXpsVensrY%3D (Pubitemid 40995501)
2. WA Rensink CR Buell 2005 Microarray expression profiling resources for plant genomes Trends in Plant Science 10 603 609 10.1016/j.tplants.2005.10.003 1:CAS:528:DC%2BD2MXht1Oms7%2FO (Pubitemid 41714016)
3. SD Lawrence C Dervinis N Novak JM Davis 2006 Wound and insect herbivory responsive genes in poplar Biotechnological Letters 28 1493 1501 10.1007/s10529-006-9119-2 1:CAS:528:DC%2BD28XptF2rsro%3D (Pubitemid 44367012)
4. JW Bae YH Park 2006 Homogeneous versus heterogeneous probes for microbial ecological microarrays Trends in Biotechnology 24 318 323 10.1016/j.tibtech. 2006.04.010 1:CAS:528:DC%2BD28XmslyltL4%3D (Pubitemid 43996919)
5. TJ Gentry GS Wickham CW Schadt Z He J Zhou 2006 Microarray applications in microbial ecology research Microbial Ecology 52 159 175 10.1007/s00248-006- 9072-6 1:CAS:528:DC%2BD28XpsVaisLw%3D (Pubitemid 44392971)
6. Z Ju MC Wells RB Walter 2007 DNA microarray technology in toxicogenomics of aquatic models: methods and applications Comparitive Biochemistry and Physiology Part C: Toxicology and Pharmacology 145 5 14 10.1016/j.cbpc.2006.04. 017 (Pubitemid 46210198)
7. M Wagner H Smidt A Loy J Zhou 2007 Unravelling microbial communities with DNA microarrays: challenges and future directions Microbial Ecology 53 498 506 10.1007/s00248-006-9197-7 1:CAS:528:DC%2BD2sXntVSgt7k%3D (Pubitemid 46716636)
8. M Becher IN Talke L Krall U Kramer 2004 Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri Plant Journal 37 251 268 1:CAS:528:DC%2BD2cXhsVGlur8%3D
9. Z Wang TP Dooley EV Curto RL Davis JL VandeBerg 2004 Cross-species application of cDNA microarrays to profile gene expression using UV-induced melanoma in Monodelphis domestica as the model system Genomics 83 588 599 10.1016/j.ygeno.2003.10.007 1:CAS:528:DC%2BD2cXitVGru7Y%3D (Pubitemid 38340801)
10. SV Nuzhdin ML Wayne KL Harmon LM McIntyre 2004 Common pattern of evolution of gene expression level and protein sequence in Drosophila Molecular Biology and Evolution 21 1308 1317 10.1093/molbev/msh128 1:CAS:528: DC%2BD2cXltlKls7g%3D (Pubitemid 38823733)
11. Y Gilad A Oshlack GK Smyth TP Speed KP White 2006 Expression profiling in primates reveals a rapid evolution of human transcription factors Nature 440 242 245 10.1038/nature04559 1:CAS:528:DC%2BD28XitFGitbw%3D (Pubitemid 43372105)
12. S Moore P Payton M Wright S Tanksley J Giovannoni 2005 Utilization of tomato microarrays for comparative gene expression analysis in the Solanaceae Journal of Experimental Botany 56 2885 2895 10.1093/jxb/eri283 1:CAS:528:DC%2BD2MXhtFCjt7jP (Pubitemid 41507225)
13. YY Belosludtsev D Bowerman R Weil N Marthandan R Balog K Luebke J Lawson SA Johnston CR Lyons K Obrien HR Garner TF Powdrill 2004 Organism identification using a genome sequence-independent universal microarray probe set Biotechniques 3 654 660
14. S Diehl F Diehl NM El-Sayed C Clayton JD Hoheisel 2002 Analysis of stagespecific gene expression in the bloodstream and the procyclic form of Trypanosoma brucei using a genomic DNA-microarray Molecular and Biochemical Parasitology 123 115 123 10.1016/S0166-6851(02)00138-X 1:CAS:528: DC%2BD38XntVWrur8%3D (Pubitemid 35247937)
15. BC Kim JH Park MB Gu 2004 Development of a DNA microarray chip for the identification of sludge bacteria using an unsequenced random genomic hybridization method Environmental Science and Technology 38 6767 6774 10.1021/es035398o 1:CAS:528:DC%2BD2cXptlOjsbc%3D (Pubitemid 39658115)
16. A Muffler S Bettermann M Haushalter A Horlein U Neveling M Schramm O Sorgenfrei 2002 Genome-wide transcription profiling of Corynebacterium glutamicum after heat shock and during growth on acetate and glucose Journal of Biotechnology 98 255 268 10.1016/S0168-1656(02)00136-0 1:CAS:528: DC%2BD38Xls1agsrY%3D (Pubitemid 34874550)
17. J Robb B Lee RN Nazar 2007 Gene suppression in a tolerant tomato-vascular pathogen interaction Planta 226 209 309 10.1007/s00425-007-0482-6 (Pubitemid 46889510)
18. R Heinz S-W Lee A Saparno RN Nazar J Robb 1998 Cyclical systemic colonization in Verticillium-infected tomato Physiological and Molecular Plant Pathology 52 385 396 10.1006/pmpp.1998.0163 (Pubitemid 28551941)
19. F Francioso F Carinci L Tosi L Scapoli F Pezzetti E Passerella R Evangelisti A Pastore S Pelucchi A Piattelli C Rubini M Fioroni P Carinci S Stefano Volinia 2002 Identification of differentially expressed genes in human salivary gland tumors by DNA microarrays Molecular Cancer Therapeutics 1 533 538 1:CAS:528:DC%2BD38XktlSksbY%3D
20. KY-Y Chan N Wong PB-S Lai JA Squire PF Macgregor B Beheshti M Albert K-F To PJ Johnson 2005 Transcriptional profiling on chromosome 19p indicated frequent downregulation of ACP5 expression in hepatocellular carcinoma International Journal of Cancer 114 902 908 10.1002/ijc.20684 1:CAS:528:DC%2BD2MXjsFWjsr4%3D
21. S Zhang DF Klessig 2001 MAPK cascades in plant defense signaling Trends in Plant Science 6 520 527 10.1016/S1360-1385(01)02103-3 1:CAS:528: DC%2BD3MXovFGksLk%3D (Pubitemid 33145971)
22. KA Marrs 1996 The functions and regulation of glutathione S-transferases in plants Annual Review of Plant Physiology and Plant Molecular Biology 47 127 158 10.1146/annurev.arplant.47.1.127 1:CAS:528:DyaK28XjtlWgsbo%3D
23. SY Bednarek NV Raikhel 1991 The barley lectin carboxyl-terminal propeptide is a vacuolar protein sorting determinant in plants Plant Cell 3 1195 1206 10.1105/tpc.3.11.1195 1:CAS:528:DyaK38XlsFKgsA%3D%3D
24. H Sano Y Ohashi 1995 Involvement of small GTP-binding proteins in defense signal-transduction pathways of higher plants Proceedings of the National Academy of Sciences of the United States of America 92 4138 4144 10.1073/pnas.92.10.4138 1:CAS:528:DyaK2MXls1alt7w%3D
25. C Bar-Or H Czosnek H Koltai 2007 Cross-species microarray hybridizations: a developing tool for studying species diversity Trends in Genetics 23 200 207 10.1016/j.tig.2007.02.003 1:CAS:528:DC%2BD2sXjslShurs%3D (Pubitemid 46497509)