-
1
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium (2004) Finishing the euchromatic sequence of the human genome. Nature 431, 931-945
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
2
-
-
0034204044
-
Gene index analysis of the human genome estimates approximately 120 000 genes
-
Liang, F., Holt, I., Pertea, G., Karamycheva, S., Salzberg, S. L. and Quackenbush, J. (2000) Gene index analysis of the human genome estimates approximately 120 000 genes. Nat. Genet. 25, 239-240
-
(2000)
Nat. Genet.
, vol.25
, pp. 239-240
-
-
Liang, F.1
Holt, I.2
Pertea, G.3
Karamycheva, S.4
Salzberg, S.L.5
Quackenbush, J.6
-
3
-
-
30044442791
-
Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
-
DOI 10.1101/gr.4039406
-
Kimura, K., Wakamatsu, A., Suzuki, Y., Ota, T., Nishikawa, T., Yamashita, R., Yamamoto, J., Sekine, M., Tsuritani, K., Wakaguri, H. et al. (2006) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Genome Res. 16, 55-65 (Pubitemid 43048934)
-
(2006)
Genome Research
, vol.16
, Issue.1
, pp. 55-65
-
-
Kimura, K.1
Wakamatsu, A.2
Suzuki, Y.3
Ota, T.4
Nishikawa, T.5
Yamashita, R.6
Yamamoto, J.-I.7
Sekine, M.8
Tsuritani, K.9
Wakaguri, H.10
Ishii, S.11
Sugiyama, T.12
Saito, K.13
Isono, Y.14
Irie, R.15
Kushida, N.16
Yoneyama, T.17
Otsuka, R.18
Kanda, K.19
Yokoi, T.20
Kondo, H.21
Wagatsuma, M.22
Murakawa, K.23
Ishida, S.24
Ishibashi, T.25
Takahashi-Fujii, A.26
Tanase, T.27
Nagai, K.28
Kikuchi, H.29
Nakai, K.30
Isogai, T.31
Sugano, S.32
more..
-
4
-
-
33745899048
-
Alternative splicing: New insights from global analyses
-
Blencowe, B. J. (2006) Alternative splicing: new insights from global analyses. Cell 126, 37-47
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
5
-
-
45249096678
-
2P2.1 Potassium Channels Permeable to Sodium
-
DOI 10.1016/j.neuron.2008.04.016, PII S0896627308003681
-
Thomas, D., Plant, L. D., Wilkens, C. M., McCrossan, Z. A. and Goldstein, S. A. (2008) Alternative translation initiation in rat brain yields K2P2.1 potassium channels permeable to sodium. Neuron 58, 859-870 (Pubitemid 351842748)
-
(2008)
Neuron
, vol.58
, Issue.6
, pp. 859-870
-
-
Thomas, D.1
Plant, L.D.2
Wilkens, C.M.3
McCrossan, Z.A.4
Goldstein, S.A.N.5
-
6
-
-
57049187032
-
Control of the single channel conductance of K2P10.1 (TREK-2) by the amino-terminus: Role of alternative translation initiation
-
Simkin, D., Cavanaugh, E. J. and Kim, D. (2008) Control of the single channel conductance of K2P10.1 (TREK-2) by the amino-terminus: role of alternative translation initiation. J. Physiol. 586, 5651-5663
-
(2008)
J. Physiol.
, vol.586
, pp. 5651-5663
-
-
Simkin, D.1
Cavanaugh, E.J.2
Kim, D.3
-
7
-
-
0031466639
-
Mammalian cells express two differently localized Bag-1 isoforms generated by alternative translation initiation
-
Packham, G., Brimmell, M. and Cleveland, J. L. (1997) Mammalian cells express two differently localised Bag-1 isoforms generated by alternative translation initiation. Biochem. J. 328, 807-813 (Pubitemid 28005779)
-
(1997)
Biochemical Journal
, vol.328
, Issue.3
, pp. 807-813
-
-
Packham, G.1
Brimmell, M.2
Cleveland, J.L.3
-
8
-
-
33750997021
-
Specific isoforms of translation initiation factor 4GI show differences in translational activity
-
DOI 10.1128/MCB.01248-06
-
Coldwell, M. J. and Morley, S. J. (2006) Specific isoforms of translation initiation factor 4GI show differences in translational activity. Mol. Cell. Biol. 26, 8448-8460 (Pubitemid 44748578)
-
(2006)
Molecular and Cellular Biology
, vol.26
, Issue.22
, pp. 8448-8460
-
-
Coldwell, M.J.1
Morley, S.J.2
-
9
-
-
75149196287
-
The mechanism of eukaryotic translation initiation and principles of its regulation
-
Jackson, R. J., Hellen, C. U. and Pestova, T. V. (2010) The mechanism of eukaryotic translation initiation and principles of its regulation. Nat. Rev. Mol. Cell Biol. 11, 113-127
-
(2010)
Nat. Rev. Mol. Cell Biol.
, vol.11
, pp. 113-127
-
-
Jackson, R.J.1
Hellen, C.U.2
Pestova, T.V.3
-
10
-
-
0037781584
-
Conducting the initiation of protein synthesis: The role of eIF4G
-
DOI 10.1016/S0248-4900(03)00031-5
-
Prevot, D., Darlix, J. L. and Ohlmann, T. (2003) Conducting the initiation of protein synthesis: the role of eIF4G. Biol. Cell 95, 141-156 (Pubitemid 36889217)
-
(2003)
Biology of the Cell
, vol.95
, Issue.3-4
, pp. 141-156
-
-
Prevot, D.1
Darlix, J.-L.2
Ohlmann, T.3
-
11
-
-
0032858414
-
From factors to mechanisms: Translation and translational control in eukaryotes
-
DOI 10.1016/S0959-437X(99)00005-2
-
Preiss, T. and Hentze, M. W. (1999) From factors to mechanisms: translation and translational control in eukaryotes. Curr. Opin. Genet. Dev. 9, 515-521 (Pubitemid 29484043)
-
(1999)
Current Opinion in Genetics and Development
, vol.9
, Issue.5
, pp. 515-521
-
-
Preiss, T.1
Hentze, M.W.2
-
12
-
-
33748531313
-
Where to begin? The mechanism of translation initiation codon selection in eukaryotes
-
DOI 10.1016/j.cbpa.2006.08.010, PII S1367593106001190, Analytical Techniques/Mechanisms
-
Algire, M. A. and Lorsch, J. R. (2006) Where to begin? The mechanism of translation initiation codon selection in eukaryotes. Curr. Opin. Chem. Biol. 10, 480-486 (Pubitemid 44375066)
-
(2006)
Current Opinion in Chemical Biology
, vol.10
, Issue.5
, pp. 480-486
-
-
Algire, M.A.1
Lorsch, J.R.2
-
13
-
-
0023665902
-
An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs
-
Kozak, M. (1987) An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res. 15, 8125-8148
-
(1987)
Nucleic Acids Res.
, vol.15
, pp. 8125-8148
-
-
Kozak, M.1
-
14
-
-
33746493350
-
A survey of mRNA sequences with a non-AUG start codon in RefSeq database
-
Tikole, S. and Sankararamakrishnan, R. (2006) A survey of mRNA sequences with a non-AUG start codon in RefSeq database. J. Biomol. Struct. Dyn. 24, 33-42
-
(2006)
J. Biomol. Struct. Dyn.
, vol.24
, pp. 33-42
-
-
Tikole, S.1
Sankararamakrishnan, R.2
-
15
-
-
0037781523
-
Generation of protein isoform diversity by alternative initiation of translation at non-AUG codons
-
DOI 10.1016/S0248-4900(03)00033-9
-
Touriol, C., Bornes, S., Bonnal, S., Audigier, S., Prats, H., Prats, A. C. and Vagner, S. (2003) Generation of protein isoform diversity by alternative initiation of translation at non-AUG codons. Biol. Cell. 95, 169-178 (Pubitemid 36889219)
-
(2003)
Biology of the Cell
, vol.95
, Issue.3-4
, pp. 169-178
-
-
Touriol, C.1
Bornes, S.2
Bonnal, S.3
Audigier, S.4
Prats, H.5
Prats, A.-C.6
Vagner, S.7
-
16
-
-
0031039645
-
A new translational regulator with homology to eukaryotic translation initiation factor 4G
-
DOI 10.1093/emboj/16.4.817
-
Imataka, H., Olsen, H. S. and Sonenberg, N. (1997) A new translational regulator with homology to eukaryotic translation initiation factor 4G. EMBO J. 16, 817-825 (Pubitemid 27089528)
-
(1997)
EMBO Journal
, vol.16
, Issue.4
, pp. 817-825
-
-
Imataka, H.1
Olsen, H.S.2
Sonenberg, N.3
-
17
-
-
0037066737
-
Mass spectrometric analysis of the N terminus of translational initiation factor eIF4G-1 reveals novel isoforms
-
DOI 10.1074/jbc.M111134200
-
Bradley, C. A., Padovan, J. C., Thompson, T. C., Benoit, C. A., Chait, B. T. and Rhoads, R. E. (2002) Mass spectrometric analysis of the N-terminus of translation initiation factor eIF4G-1 reveals novel isoforms. J. Biol. Chem. 277, 12559-12571 (Pubitemid 34952614)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.15
, pp. 12559-12571
-
-
Bradley, C.A.1
Padovan, J.C.2
Thompson, T.L.3
Benoit, C.A.4
Chait, B.T.5
Rhoads, R.E.6
-
18
-
-
0036272304
-
Generation of multiple isoforms of eukaryotic translation initiation factor 4GI by use of alternate translation initiation codons
-
DOI 10.1128/MCB.22.13.4499-4511.2002
-
Byrd, M. P., Zamora, M. and Lloyd, R. E. (2002) Generation of multiple isoforms of eukaryotic translation initiation factor 4GI by use of alternate translation initiation codons. Mol. Cell. Biol. 22, 4499-4511 (Pubitemid 34620388)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.13
, pp. 4499-4511
-
-
Byrd, M.P.1
Zamora, M.2
Lloyd, R.E.3
-
19
-
-
0031982683
-
A novel functional human eukaryotic translation initiation factor 4G
-
Gradi, A., Imataka, H., Svitkin, Y. V., Rom, E., Raught, B., Morino, S. and Sonenberg, N. (1998) A novel functional human eukaryotic translation initiation factor 4G. Mol. Cell. Biol. 18, 334-342 (Pubitemid 28021044)
-
(1998)
Molecular and Cellular Biology
, vol.18
, Issue.1
, pp. 334-342
-
-
Gradi, A.1
Imataka, H.2
Svitkin, Y.V.3
Rom, E.4
Raught, B.5
Morino, S.6
Sonenberg, N.7
-
20
-
-
0033050679
-
Eukaryotic initiation factor 4GII (eIF4GII), but not eIF4GI, cleavage correlates with inhibition of host cell protein synthesis after human rhinovirus infection
-
Svitkin, Y. V., Gradi, A., Imataka, H., Morino, S. and Sonenberg, N. (1999) Eukaryotic initiation factor 4GII (eIF4GII), but not eIF4GI, cleavage correlates with inhibition of host cell protein synthesis after human rhinovirus infection. J. Virol. 73, 3467-3472 (Pubitemid 29135743)
-
(1999)
Journal of Virology
, vol.73
, Issue.4
, pp. 3467-3472
-
-
Svitkin, Y.V.1
Gradi, A.2
Imataka, H.3
Morino, S.4
Sonenberg, N.5
-
21
-
-
0034517764
-
Cleavage of eukaryotic translation initiation factor 4GII correlates with translation inhibition during apoptosis
-
DOI 10.1038/sj.cdd.4400750
-
Marissen, W. E., Gradi, A., Sonenberg, N. and Lloyd, R. E. (2000) Cleavage of eukaryotic translation initiation factor 4GII correlates with translation inhibition during apoptosis. Cell Death Differ. 7, 1234-1243 (Pubitemid 32042231)
-
(2000)
Cell Death and Differentiation
, vol.7
, Issue.12
, pp. 1234-1243
-
-
Marissen, W.E.1
Gradi, A.2
Sonenberg, N.3
Lloyd, R.E.4
-
22
-
-
0036308653
-
In vitro cleavage of eIF4GI but not eIF4GII by HIV-1 protease and its effects on translation in the rabbit reticulocyte lysate system
-
DOI 10.1016/S0022-2836(02)00070-0
-
Ohlmann, T., Prevot, D., Decimo, D., Roux, F., Garin, J., Morley, S. J. and Darlix, J. L. (2002) In vitro cleavage of eIF4GI but not eIF4GII by HIV-1 protease and its effects on translation in the rabbit reticulocyte lysate system. J. Mol. Biol. 318, 9-20 (Pubitemid 34729381)
-
(2002)
Journal of Molecular Biology
, vol.318
, Issue.1
, pp. 9-20
-
-
Ohlmann, T.1
Prevot, D.2
Decimo, D.3
Roux, F.4
Garin, J.5
Morley, S.J.6
Darlix, J.-L.7
-
23
-
-
2442679170
-
Selective modification of eukaryotic initiation factor 4F (eIF4F) at the onset of cell differentiation: Recruitment of eIF4GII and long-lasting phosphorylation of eIF4E
-
DOI 10.1128/MCB.24.11.4920-4928.2004
-
Caron, S., Charon, M., Cramer, E., Sonenberg, N. and Dusanter-Fourt, I. (2004) Selective modification of eukaryotic initiation factor 4F (eIF4F) at the onset of cell differentiation: recruitment of eIF4GII and long-lasting phosphorylation of eIF4E. Mol. Cell. Biol. 24, 4920-4928 (Pubitemid 38668056)
-
(2004)
Molecular and Cellular Biology
, vol.24
, Issue.11
, pp. 4920-4928
-
-
Caron, S.1
Charon, M.2
Cramer, E.3
Sonenberg, N.4
Dusanter-Fourt, I.5
-
24
-
-
1842794166
-
Expression of fragments of translation initiation factor elF4Gl reveals a nuclear localisation signal within the N-terminal apoptotic cleavage fragment N-FAG
-
DOI 10.1242/jcs.01106
-
Coldwell, M. J., Hashemzadeh-Bonehi, L., Hinton, T. M., Morley, S. J. and Pain, V. M. (2004) Expression of fragments of translation initiation factor eIF4GI reveals a nuclear localisation signal within the N-terminal apoptotic cleavage fragment N-FAG. J. Cell Sci. 117, 2545-2555 (Pubitemid 38877850)
-
(2004)
Journal of Cell Science
, vol.117
, Issue.12
, pp. 2545-2555
-
-
Coldwell, M.J.1
Hashemzadeh-Bonehi, L.2
Hinton, T.M.3
Morley, S.J.4
Pain, V.M.5
-
25
-
-
0027249595
-
dbEST - Database for 'expressed sequence tags' [2]
-
DOI 10.1038/ng0893-332
-
Boguski, M. S., Lowe, T. M. and Tolstoshev, C. M. (1993) dbEST: database for "expressed sequence tags". Nat. Genet. 4, 332-333 (Pubitemid 23231478)
-
(1993)
Nature Genetics
, vol.4
, Issue.4
, pp. 332-333
-
-
Boguski, M.S.1
Lowe, T.M.J.2
Tolstoshev, C.M.3
-
26
-
-
0030638456
-
Mutagenesis and gene fusion by megaprimer PCR
-
Barik, S. (1997) Mutagenesis and gene fusion by megaprimer PCR. Methods Mol. Biol. 67, 173-182
-
(1997)
Methods Mol. Biol.
, vol.67
, pp. 173-182
-
-
Barik, S.1
-
27
-
-
0033948682
-
Cleavage of polypeptide chain initiation factor eIF4GI during apoptosis in lymphoma cells: Characterisation of an internal fragment generated by caspase-3-mediated cleavage
-
Bushell, M., Poncet, D., Marissen, W. E., Flotow, H., Lloyd, R. E., Clemens, M. J. and Morley, S. J. (2000) Cleavage of polypeptide chain initiation factor eIF4GI during apoptosis in lymphoma cells: characterisation of an internal fragment generated by caspase-3-mediated cleavage. Cell Death Differ. 7, 628-636 (Pubitemid 30456168)
-
(2000)
Cell Death and Differentiation
, vol.7
, Issue.7
, pp. 628-636
-
-
Bushell, M.1
Poncet, D.2
Marissen, W.E.3
Flotow, H.4
Lloyd, R.E.5
Clemens, M.J.6
Morley, S.J.7
-
28
-
-
0345373936
-
Characterization of a novel RNA-binding region of eIF4GI critical for ribosomal scanning
-
DOI 10.1093/emboj/cdg175
-
Prevot, D., Decimo, D., Herbreteau, C. H., Roux, F., Garin, J., Darlix, J. L. and Ohlmann, T. (2003) Characterization of a novel RNA-binding region of eIF4GI critical for ribosomal scanning. EMBO J. 22, 1909-1921 (Pubitemid 36460147)
-
(2003)
EMBO Journal
, vol.22
, Issue.8
, pp. 1909-1921
-
-
Prevot, D.1
Decimo, D.2
Herbreteau, C.H.3
Roux, F.4
Garin, J.5
Darlix, J.-L.6
Ohlmann, T.7
-
29
-
-
33847332134
-
Functional analysis of individual binding activities of the scaffold protein eIF4G
-
DOI 10.1074/jbc.M602780200
-
Hinton, T. M., Coldwell, M. J., Carpenter, G. A., Morley, S. J. and Pain, V. M. (2007) Functional analysis of individual binding activities of the scaffold protein eIF4G. J. Biol. Chem. 282, 1695-1708 (Pubitemid 47076685)
-
(2007)
Journal of Biological Chemistry
, vol.282
, Issue.3
, pp. 1695-1708
-
-
Hinton, T.M.1
Coldwell, M.J.2
Carpenter, G.A.3
Morley, S.J.4
Pain, V.M.5
-
30
-
-
44449100617
-
Bioinformatic analyses of mammalian 5′-UTR sequence properties of mRNAs predicts alternative translation initiation sites
-
Wegrzyn, J. L., Drudge, T. M., Valafar, F. and Hook, V. (2008) Bioinformatic analyses of mammalian 5′-UTR sequence properties of mRNAs predicts alternative translation initiation sites. BMC Bioinformatics 9, 232
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 232
-
-
Wegrzyn, J.L.1
Drudge, T.M.2
Valafar, F.3
Hook, V.4
-
31
-
-
0028213438
-
Oligo-capping: A simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides
-
DOI 10.1016/0378-1119(94)90802-8
-
Maruyama, K. and Sugano, S. (1994) Oligo-capping: a simple method to replace the cap structure of eukaryotic messenger-RNAs with oligoribonucleotides. Gene 138, 171-174 (Pubitemid 24087571)
-
(1994)
Gene
, vol.138
, Issue.1-2
, pp. 171-174
-
-
Maruyama, K.1
Sugano, S.2
-
32
-
-
77954691462
-
Illuminating eukaryotic transcription start sites
-
Stamatoyannopoulos, J. A. (2010) Illuminating eukaryotic transcription start sites. Nat. Methods 7, 501-503
-
(2010)
Nat. Methods
, vol.7
, pp. 501-503
-
-
Stamatoyannopoulos, J.A.1
-
33
-
-
0035811565
-
The p36 isoform of BAG-1 is translated by internal ribosome entry following heat shock
-
DOI 10.1038/sj.onc.1204547
-
Coldwell, M. J., deSchoolmeester, M. L., Fraser, G. A., Pickering, B. M., Packham, G. and Willis, A. E. (2001) The p36 isoform of BAG-1 is translated by internal ribosome entry following heat shock. Oncogene 20, 4095-4100 (Pubitemid 32681614)
-
(2001)
Oncogene
, vol.20
, Issue.30
, pp. 4095-4100
-
-
Coldwell, M.J.1
DeSchoolmeester, M.L.2
Fraser, G.A.3
Pickering, B.M.4
Packham, G.5
Willis, A.E.6
-
34
-
-
0034677589
-
Initiation of Apaf-1 translation by internal ribosome entry
-
Coldwell, M. J., Mitchell, S. A., Stoneley, M., MacFarlane, M. and Willis, A. E. (2000) Initiation of Apaf-1 translation by internal ribosome entry. Oncogene 19, 899-905 (Pubitemid 30153747)
-
(2000)
Oncogene
, vol.19
, Issue.7
, pp. 899-905
-
-
Coldwell, M.J.1
Mitchell, S.A.2
Stoneley, M.3
MacFarlane, M.4
Willis, A.E.5
-
35
-
-
0025107694
-
Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes
-
Kozak, M. (1990) Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes. Proc. Natl. Acad. Sci. U.S.A. 87, 8301-8305
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 8301-8305
-
-
Kozak, M.1
-
36
-
-
35548935529
-
AUG-hairpin: Prediction of a downstream secondary structure influencing the recognition of a translation start site
-
Kochetov, A. V., Palyanov, A., Titov, II, Grigorovich, D., Sarai, A. and Kolchanov, N. A. (2007) AUG-hairpin: prediction of a downstream secondary structure influencing the recognition of a translation start site. BMC Bioinf. 8, 318
-
(2007)
BMC Bioinf.
, vol.8
, pp. 318
-
-
Kochetov, A.V.1
Palyanov, A.2
Titov, I.I.3
Grigorovich, D.4
Sarai, A.5
Kolchanov, N.A.6
-
37
-
-
79961205190
-
Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences
-
Ivanov, I. P., Firth, A. E., Michel, A. M., Atkins, J. F. and Baranov, P. V. (2011) Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences. Nucleic Acids Res. 39, 4220-4234
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 4220-4234
-
-
Ivanov, I.P.1
Firth, A.E.2
Michel, A.M.3
Atkins, J.F.4
Baranov, P.V.5
-
38
-
-
62849124523
-
Canonical initiation factor requirements of the Myc family of internal ribosome entry segments
-
Spriggs, K. A., Cobbold, L. C., Jopling, C. L., Cooper, R. E., Wilson, L. A., Stoneley, M., Coldwell, M. J., Poncet, D., Shen, Y. C., Morley, S. J. et al. (2009) Canonical initiation factor requirements of the Myc family of internal ribosome entry segments. Mol. Cell. Biol. 29, 1565-1574
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 1565-1574
-
-
Spriggs, K.A.1
Cobbold, L.C.2
Jopling, C.L.3
Cooper, R.E.4
Wilson, L.A.5
Stoneley, M.6
Coldwell, M.J.7
Poncet, D.8
Shen, Y.C.9
Morley, S.J.10
-
39
-
-
21444446061
-
Translation of eukaryotic translation initiation factor 4GI (eIF4GI) proceeds from multiple mRNAs containing a novel cap-dependent internal ribosome entry site (IRES) that is active during poliovirus infection
-
DOI 10.1074/jbc.M414014200
-
Byrd, M. P., Zamora, M. and Lloyd, R. E. (2005) Translation of eukaryotic translation initiation factor 4GI (eIF4GI) proceeds from multiple mRNAs containing a novel cap-dependent internal ribosome entry site (IRES) that is active during poliovirus infection. J. Biol. Chem. 280, 18610-18622 (Pubitemid 41379560)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.19
, pp. 18610-18622
-
-
Byrd, M.P.1
Zamora, M.2
Lloyd, R.E.3
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