Low genetic variation suggest single stock of kawakawa Euthynnus affinis (Cantor, 1849) along the indian coast

Turkish Journal of Fisheries and Aquatic Sciences

Volumn 12, Issue 3, 2012, Pages 555-564

  Kumar, Girish ^a   Kunal, Swaraj Priyaranjan ^a   Menezes, Maria Rosalia ^a  

^a NATIONAL INSTITUTE OF OCEANOGRAPHY   (India)

Author keywords

D loop; Indian waters; MtDNA; PCR RFLP

Indexed keywords

EID: 84867689519     PISSN: 13032712     EISSN: None     Source Type: Journal    
DOI: 10.4194/1303-2712-v12_3_02     Document Type: Article

References (45)

1. Alvarado Bremer, J.R. 1994. Assessment of morphological and genetic variation of the swordfish (Xiphias gladius Linnaeus). evolutionary patterns of nucleotide substitution in the mitochondrial genome. PhD. thesis Ontario: University of Toronto, Canada.
2. Alvarado Bremer, J.R., Stequert, B., Robertson, N.W. and Ely, B. 1998. Genetic evidence for inter-oceanic subdivision of bigeye tuna (Thunnus obesus) populations. Mar. Biol., 132: 547-557. doi: 10.1007/s002270050420
3. Appleyard, S.A., Ward, R.D. and Grewe, P.M. 2002. Genetic stock structure of bigeye tuna in the Indian Ocean using mitochondrial DNA and microsatellites. J. Fish Biol., 60: 767-770. doi: 10.1111/j.1095-8649.2002.tb01701.x
4. Asahida, T., Kobayashi, T., Saitoh, K. and Nakayama, I. 1996. Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish. Sci., 62: 727-730.
5. Buonaccorsi, V.P., Reece, K.S., Morgan, L.S. and Graves, J.E. 1999. Geographic distribution of molecular variance within the blue marlin (Makaira nigricans). A hierarchical analysis of allozyme, single copy nuclear DNA, and mitochondrial DNA markers. Evolution, 53: 568-579. doi: 10.2307/2640793
6. Chiou, W.D. and Lee, L.K. 2004. Migration of kawakawa Euthynnus affinis in the waters near Taiwan. Fish. Sci., 70: 746-757. doi: 10.1111/j.1444-2906.2004.00867.x
7. Chow, S. Okamoto, H., Miyabe, N., Hiramatsu, K. and Barut, N. 2000. Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa. Mol. Ecol., 9: 221-227. doi: 10.1046/j.1365-294x.2000.00851.x
8. Collette, B.B. 2001. Scombridae. Tunas (also, albacore, bonitos, mackerels, seerfishes, and wahoo). In: K.E. Carpenter, V. Niem, (Eds.), FAO species identification guide for fishery purposes. The living marine resources of the Western Central Pacific. Bony fishes (Labridae to Latimeriidae), estuarine crocodiles. FAO, Rome: 3721-3756.
9. Collette, B.B. and Nauen, C.E. 1983. FAO species catalogue, Scombrids of the world. An annotated and illustrated catalogue of tunas, mackerels, bonitos, and related species known to date. FAO Fish Synop., 125: 1-137.
10. Cronin, M.A., Spearman, W.J. and Wilmot, R.L. 1993. Mitochondrial DNA variation in chinook (Oncorhynchus tshawyacha) and chum Salmon (O. keta) detected by restriction enzyme analysis of polymerase chain reaction (PCR) products. Can. J. Fish. Aquat. Sci., 50: 708-715.doi: 10.1139/f93-081
11. Donaldson, K.A. and Wilson, R.R. 1999. Amphi-Panamaic geminates of snook (Percoidei: Centropomidae) provide a calibration of the divergence rates in the mitochondrial DNA control region of fishes. Mol. Phylo. Evol., 13: 208-213. doi: 10.1006/mpev.1999.0625
12. Durand, J.D., Collet, A., Chow, S., Guinand, B. and Borsa, P. 2005. Nuclear and mitochondrial DNA markers indicate unidirectional gene flow of Indo-Pacific to Atlantic bigeye tuna (Thunnus obesus) populations, and their admixture off southern Africa. Mar. Biol., 147: 313-322.doi: 10.1007/s00227-005-1564-2
13. Excoffier, L., Laval, G. and Schneider, S. 2005. Arlequin version 3.11: an integrated software package for population genetics data analysis. Evol. Bioinfo., 1: 47-50.
14. FAO, 2007. The State of World Fisheries and Aquaculture 2006. FAO Fisheries and Aquaculture Department, Food and Agriculture Organization of the United Nations, Rome, 180 pp.
15. Fu, Y.X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147: 915-925.
16. Grant, W.S. and Bowen, B.W. 1998. Shallow population histories in deep evolutionary lineages of marine fishes. insights from sardines and anchovies and lessons for conservation. J. Hered., 89: 415-426. doi: 10.1093/jhered/89.5.415
17. Grewe, P.M. and Hampton, J. 1998. An assessment of bigeye (Thunnus obesus) population structure in the Pacific Ocean based on mitochondrial DNA and DNA microsatellite analysis. SOEST (School of Ocean & Earth Science Technology) Publ 98-05, JIMAR (Joint Institute for Marine & Atmospheric Research) Contrib 98-320. University of Hawaii at Manoa, HI.
18. Gulland, J.A. 1965. Fish stock assessment: a manual of basic methods. Wiley, NY.
19. Harpending, R.C. 1994. Signature of ancient population growth in a low resolution mitochondrial DNA mismatch distribution. Hum. Biol., 66: 591-600.
20. Hoolihan, J.P., Anandn, P. and Herwerden, L. 2006. Mitochondrial DNA analyses of narrow-barred Spanish mackerel (Scomberomorus commerson) suggest a single genetic stock in ROPME sea area (Arabian Gulf, Gulf of Oman and Arabian Sea). ICES J. Mar. Sci., 63: 1066-1074.
21. James, P.S.B.R., Srinath, M. and Jayaprakash, A.A. 1987. Stock assessment of tunas in the seas around India. Coll. Vol. Working Doc., FAO/IPTP, II, 353-366.
22. Menezes, M.R., Ikeda, M. and Taniguchi, N. 2006. Genetic variation in skipjack tuna Katsuwonus pelamis (L.) using PCR-RFLP analysis of mitochondrial DNA D-loop region. J. Fish Biol., 68 (a): 156-161.
23. Menezes, M.R., Noguchi, D., Nakajima, M. and Taniguchi, N. 2008. Microsatellite development and survey of genetic variation in skipjack tuna Katsuwonus pelamis (L.). J. Fish Biol., 73: 463-473. doi: 10.1111/j.1095-8649.2008.01912.x
24. Ovenden, J.R. 1990. Mitochondrial DNA and marine stock assessment. A Review. Aust. J. Mar. Freshw. Res., 41: 835-853. doi: 10.1071/MF9900835
25. Palumbi, S.R. 1992. Marine speciation on a small planet. Trends Ecol. Evol., 7: 114-118. doi: 10.1016/0169-5347(92)90144-Z
26. Pillai, P.P. and Gopakumar, G. 2003. In: M. Mohan Joseph, A.A. Jayaprakash, (Eds.), Status of exploited marine fishery resources of India. pp. 51-59.
27. Quinta, R., Gomes, L. and Santos, A. 2004. A mitochondrial DNA PCR-RFLP marker for population studies of the black scabbardfish (Aphanopus carbo). ICES J. Mar. Sci., 61: 864-867. doi: 10.1016/j.icesjms.2004.03.003
28. Ravago-Gotanco, R.G. and Juinio-Meñez, M.A. 2004. Population genetic structure of the milkfish, Chanos chanos, based on PCR-RFLP analysis of the mitochondrial control region. Mar. Biol., 145: 789-801.
29. Raymond, M.L. and Rousset, F. 1995. An exact test for population differentiation. Evolution, 49: 1280-1283. doi: 10.2307/2410454
30. Reiss, H., Hoarau, G., Dickey-Collas, M. and Wolff, W.J. 2009. Genetic population structure of marine fish: mismatch between biological and fisheries management units. Fish and Fisheries 10: 361-395. doi: 10.1111/j.1467-2979.2008.00324.x
31. Ricker, W.E. 1975. Computation and interpretation of biological statistics of fish populations. Bull. Fish. Res. Bd. Canada 191: 1-382.
32. Rogers, A.R. and Harpending, H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol., 9: 552-569.
33. Santos, M.D., Lopez, G.V. and Barut, N.C. 2010. A Pilot Study on the Genetic Variation of Eastern Little Tuna (Euthynnus affinis) in Southeast Asia. Philip. J. Sci., 139 (1): 43-50.
34. Schott, F.A. and McCreary, J.P. Jr. 2001. The monsoon circulation of the Indian Ocean. Progr. Oceanogr., 51: 1-123. doi: 10.1016/S0079-6611(01)00083-0
35. Shui, B., Han, Z., Gao, T., Miao, Z. and Yanagimoto, T. 2009. Mitochondrial DNA variation in the East China Sea and Yellow Sea population of Japanese Spanish mackerel Scomberomorus niphonius. Fish. Sci., 75: 593-600. doi: 10.1007/s12562-009-0083-3
36. Silas, E.G., Pillai, P.P., Srinath, M., Jayaprakash, A.A., Muthiah, C., Balan, V., Yohannan, T.M., Siraimeetan, P., Madan Mohan, Livingston, P., Kunhikoya, K.K., Pillai, M.A. and Sharma, P.S.S. 1986. Population dynamics of tunas. stock assessment. CMFRI Bull., 36(3): 20-27.
37. Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 10: 512-526.
38. Takahata, N. and Palumbi, S.R. 1985. Extranuclear differentiation and gene flow in the finite island model. Genetics 109: 441-457.
39. Teacher, A.G.F. and Griffiths, D.J. 2011. HapStar: automated haplotype network layout and visualization. Mol. Ecol. Resources, 11: 151-153. doi: 10.1111/j.1755-0998.2010.02890.x
40. Turan, C., Gurlek, M., Yaglioglu, D. and Ozturk, B. 2009. Genetic differentiation of Mediterranean horse mackerel (Trachurus mediterraneus) populations as revealed by mtDNA PCR-RFLP analysis. J. Appl. Ichthyol., 25: 142-147. doi: 10.1111/j.1439-0426.2009.01223.x
41. Vijayakumaran, K. and Varghese, S.P. 2010. Update on the status of tuna fisheries in India. IOTC-2010-SC-Inf12.
42. Ward, R.D. 2000. Genetics in fisheries management. Hydrobiologia, 420: 191-201. doi: 10.1023/A:1003928327503
43. Ward, R.D., Woodmark, M. and Skibinski, D.O.F. 1994. A comparison of genetic diversity levels in marine, freshwater and anadromous fishes. J. Fish Biol., 44: 213-232.doi: 10.1111/j.1095-8649.1994.tb01200.x
44. Wright, B.S. 1951. The genetical structure of populations. Ann. Eugen., 15: 323-354. doi: 10.1111/j.1469-1809.1949.tb02451.x
45. Yesaki, M. 1994. A review of the biology and fisheries for kawakawa (Euthynnus affinis) in the Indo-Pacific Region. FAO Fish Technical Paper Number 336: 993-439.