Genetic differentiation of Mediterranean horse mackerel (Trachurus mediterraneus) populations as revealed by mtDNA PCR-RFLP analysis

Journal of Applied Ichthyology

Volumn 25, Issue 2, 2009, Pages 142-147

  Turan, C ^a   Gurlek, M ^a   Yaglioglu, D ^a   Ozturk, B ^b  

^a MUSTAFA KEMAL UNIVERSITY   (Turkey)

^b ISTANBUL UNIVERSITY   (Turkey)

Author keywords

[No Author keywords available]

Indexed keywords

EQUIDAE; TRACHURUS MEDITERRANEUS;

EID: 70350270297     PISSN: 01758659     EISSN: 14390426     Source Type: Journal    
DOI: 10.1111/j.1439-0426.2009.01223.x     Document Type: Article

References (50)

1. Alheit, J.; Pitcher, T. J., 1995: Hake: biology, fisheries and markets Fish and Fisheries Series 15. Chapman and Hall, London, 478 p.
2. Avise, J. C., 1994: Molecular markers, natural history and evolution. Chapman and Hall, New York, USA, 511 p.
3. Brown, W. M.; Prager, E. M.; Wang, A.; Wilson, A. C., 1982: Mitochondrial DNA sequences of primates: tempo and mode of evolution. J. Mol. Evol. 18, 225-239.
4. Carvalho, G. R.; Hauser, L., 1994: Molecular genetics and the stock concept in fisheries. Rev. Fish. Biol. Fish. 4, 326-350.
5. Chow, S.; Okamoto, H.; Miyabe, N.; Hiramatsu, K.; Barut, N., 2000: Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa.Mol. Ecol. 9, 221-227.
6. D'Amato, M. E.; Carvalho, G. R., 2005: Population genetic structure and history of the long-tailed hake, Macruronus magellanicus, in the SW Atlantic as revealed by mtDNA RFLP analysis. ICES J. Mar. Sci. 62, 247-255.
7. Daskalov, G., 1998: Pecheries et changement environmental a longterm en mer Noire. Ph.D. Thesis. Centre d'oceanologie de Marseille, Univ. Aix-Marseille II, 262 p.
8. Daskalov, G., 1999: Relating fish recruitment to stock biomass and physical environment in the Black Sea using generalized additive models. Fish. Res. 41, 1-23.
9. Deuser, W. G., 1972: Late-Pleistocene and Holocene history of the Black Sea as indicated by stable isotope studies. J. Geophys. Res. 77, 1071-1077.
10. DIE, 2001: Fishery Statistics. Prime Ministry Republic of Turkey. Turkish Statistics Institute, Ankara, Turkey.
11. DIE, 2004: Fishery Statistics. Prime Ministry Republic of Turkey. Turkish Statistics Institute, Ankara, Turkey.
12. Excoffier, L. G. L.; Schneider, S., 2005: An integrated software package for population genetics data analysis. Arlequin ver. 3.0. Evol. Bioinfor. Onl. 1, 47-50.
13. Felsenstein, J., 1985: Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
14. Fischer, W.; Bauchot, M. L.; Schneider, M., 1987: Fiches FAO d'identification des espéces pour les besoins de la pěche Mé diterrané e et mer Noire. Zone de Pě che 37, 761-1530.
15. Fu, Y. X., 1997: Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. 147, 915-925.
16. Harpening, H., 1994: Signature of ancient population growth in a low resolution mitochondrial DNA mismatch distribution. Hum. Biol. 66, 591-600.
17. Hauser, L.; Ward, R. D., 1998: Population identification in pelagic Fish: the limits of molecular markers. In: Advances in Molecular EcologyG. R. Carvalho (Ed.).. NATO Science Series IOS Press, Amsterdam. pp. 191-224.
18. Hauser, L.; Turan, C.; Carvalho, G. R., 2001: Haplotype frequency distribution and discriminatory power of two mtDNA fragments in a marine pelagic teleost (Atlantic herring, Clupea harengus). Heredity 87, 1-10.
19. Heist, E. J.; Musick, J. A.; Graves, J. E., 1996: Genetic population structure of the shortfin mako (Isurus oxyrinchus) inferred from restriction fragment length polymorphism analysis of mitochondrial DNA. Can. J. Fish. Aquat. Sci. 53, 583-588.
20. Jiang, X.; Yang, G.; Liao, M.; Liu, Y.; Gao, T.; Wang, D.; Wei, Q.; Zou, G., 2008: Microsatellite DNA polymorphism of Japanese sea bass (Laterolabrax japonicus) inhabiting Chinese and Japanese coasts. J. Appl. Ichthyol. 24, 180-186.
21. Karaiskou, N.; Apostolidis, A.; Triantafyllidis, A.; Kouvatsi, A.; Triantafyllidis, C., 2003: Genetic identification and phylogeny of three species of the genus Trachurus based on mitochondrial DNA analysis. Mar. Biotechnol. 5, 493-504.
22. Ludwig, A., 2008: Identification of Acipenseriformes species in trade. J. Appl. Ichthyol. 24(S1), 2-19.
23. Ludwig, A.; Arndt, U.; Lippold, S.; Benecke, N.; Debus, L.; King, T. L.; Matsumura, S., 2008: Tracing the first steps of American sturgeon pioneers in Europe. BMC Evol. Biol. 8, 221.
24. Mamuris, Z.; Sfougaris, A. I.; Stamatis, C., 2001: Genetic structure of Greek brown hare (Lepus europaeus) populations as revealed by mtDNA RFLP-PCR analysis: implications for conserving genetic diversity. Biol. Conserv. 101, 187-196.
25. McElroy, D.; Moran, P.; Bermingham, E.; Kornfield, J., 1991: Reap: The restriction enzyme analysis package, version 4.0. Departmentof Zoology, University of Maine, Orono
26. ME. Meyer, A., 1994: Shortcomings of the cytochrome b gene as a molecular marker. Tree 9, 278-280.
27. Miya, M.; Kawaguchi, A.; Nishida, M., 2001: Mitogenomic exploration of higher teleostean phylogenies: a case study for moderate-scale evolutionary genomics with 38 newly determined complete mitochondrial DNA sequences. Mol. Biol. Evol. 18, 1993-2009.
28. Mohindra, V.; Singh, R. K.; Palanichamy, M.; Ponniah, A. G.; Lal, K. K., 2007: Genetic identification of three species of the genus Clarias using allozyme and mitochondrial DNA markers. J. Appl. Ichthyol. 23, 104-109.
29. Nei, M., 1987: Molecular Evolutionary Genetics. Columbia University Press, New York.
30. Nei, M.; Tajima, F., 1981: DNA polymorphism detectable byrestriction endonucleases. Genetics 97, 145-163.
31. Prodanov, K.; Mikhaylov, K.; Daskalov, G.; Maxim, K.; Ozdamar,E.; Shlyakhov, V.; Chashchin, A.; Arkhipov, A., 1997: EnvironmentalManagement of Fish Resources in the Black Sea and theirRational Exploitation. Studies and Reviews. GFCM, vol.68.FAO, Rome, 178 p.
32. Rice, W. R., 1989: Analyzing tables of statistical tests. Evolution 43, 223-225.
33. Roff, D. A.; Bentzen, P., 1989: The statistical analysis of mitochondrial DNA polymorphisms: chi-squared and the problem of small samples. Mol. Biol. Evol. 6, 539-545.
34. Rogers, A. R.; Harpending, H., 1992: Population growth makes wavesin the distribution of pairwise genetic differences. Mol. Biol. Evol. 9, 552-569.
35. Rogl, F., 1999: Mediterranean and Paratethys facts and hypothesis of Oligocene to Miocene Paleogeography. Geol. Carpat. 50, 339-349.
36. Ryman, N.; Utter, F., 1987: Population genetics and fishery management. Univ. Washington Press, Seattle, WA.
37. Sambrook, J.; Fritsch, E. F.; Maniatis, T., 1989: Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
38. Shaw, P.; Turan, C.; Wrigth, J.; O'connell, M.; Carvalho, G. R., 1999: Microsatellite DNA analysis of population structure in Atlantic herring (Clupea harengus), with direct comparison to allozyme and mtDNA RFLP analyses. Heredity 83, 490-499.
39. Slatkin, M.; Hudson, R.R., 1991: Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129, 555-562.
40. Tabata, K.; Taniguchi, N., 2000: Differences between Pagrus major and Pagrus auratus through mainly mtDNA control region analysis. Fish. Sci. 66, 9-18.
41. Tegelstrom, H., 1987: Genetic variability in mitochondrial DNA in a regional population of the great tit (Pagrus major). Biochem. Genet. 25, 95-110.
42. Turan, C., 2004: Stock identification of Mediterranean horse mackerel (Trachurus mediterraneus) using morphometric and meristic characters. ICES J. Mar. Sci. 61, 774-781.
43. Turan, C., 2006: The use of otolith shape and chemistry to determine stock structure of Mediterranean horse mackerel Trachurus mediterraneus (Steindachner). J. Fish Biol. 69, 165-180.
44. Turan, C., 2008: Molecular systematics of Capoeta (Cyprinidae) species complex inferred from mitochondrial 16S rDNA sequence data. Acta Zool. Cracov. 51A (1-2), 1-14.
45. Turan, C.; Carvalho, G. R.; Mork, J., 1998: Molecular genetic analysis of atlanto-candian herring (Clupea harengus) populations using allozymes and mitochondrial DNA markers. J. Mar. Biol. Assoc. UK 78, 269-283.
46. Turan, C.;Öztürk, B.; Ergüden, D.; Gürlek, M.; Yaǧlioǧlu, D.; Uygur, N., 2007: Atlas of Marine Bony Fishes of Turkey. In: Atlas and Systematic of Marine Bony Fishes of Turkey, C. Turan (Ed.). (ISBN:978-9944-73-018-1). Nobel Publishing House, Adana,Turkey.
47. Waldman, J. R.; Doukakis, P.; Wirgin, I., 2008: Molecular analysis as a conservation tool for monitoring the trade of North American sturgeons and paddlefish. J. Appl. Ichthyol. 24(Suppl. 1), 20-28.
48. Waldron, E. M.; Kerstan, M., 2001: Age validation in horse mackerel (Trachurus trachurus) otoliths. ICES J. Mar. Sci. 58, 806-813.
49. Ward, R. D.; Elliot, N. G.; Grewe, P. M.; Smolenski, A. J., 1994a: Allozyme and mitochondrial DNA variation in yellow fin tuna (Thunnus albacares) from the Pacific Ocean. Mar. Biol. 118, 531-539.
50. Ward, R. D.; Woodwark, M.; Skibinski, D. O. F., 1994b: A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes. J. Fish Biol. 44, 213-232.