Geographic distribution of molecular variance within the blue marlin (Makaira nigricans): A hierarchical analysis of allozyme, single-copy nuclear DNA, and mitochondrial DNA markers

Evolution

Volumn 53, Issue 2, 1999, Pages 568-579

  Buonaccorsi, Vincent P ^a,b   Reece, Kimberly S ^a   Morgan, Lee W ^a   Graves, John E ^a  

^a VIRGINIA INSTITUTE OF MARINE SCIENCE   (United States)

^b SOUTHWEST FISHERIES SCIENCE CENTER   (United States)

Author keywords

Allozyme; Bill fish; Blue marlin; Comparative molecular evolution; Genetic drift; Istiophoridae; Makaira nigricans; Mitochondrial DNA; Population genetics; Single copy nuclear DNA

Indexed keywords

GENETIC DIFFERENCE; MITOCHONDRIAL DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE COPY NUCLEAR DNA;

MAKAIRA NIGRICANS;

EID: 0032965525     PISSN: 00143820     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1558-5646.1999.tb03792.x     Document Type: Article

References (84)

1. ABACUS CONCEPTS. 1996. StatView. Vers. 4.5. Abacus Concepts, Inc. Berkeley, CA.
2. ALLENDORF, F. W., AND S. R. PHELPS. 1981. Use of allelic frequencies to describe population structure. Can. J. Fish. Aquat. Sci. 38:1507-1514.
3. ALTSCHUL, S. F., G. W. MILLER, E. W. MYERS, AND D. J. LIPMAN. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
4. ANGERS, B., L. BERNATCHEZ, A. ANGERS, AND L. DESGROSEILLERS. 1995. Specific microsatellite loci for brook charr reveal strong population subdivision on a microgeographic scale. J. Fish Biology 47 (Suppl. A):177-185.
5. ANONYMOUS. 1994. Cooperative game fish tagging program annual newsletter: 1992. Southeast Fisheries Science Center, Miami, FL.
6. _. 1996. 1996 Billfish newsletter. Southwest Fisheries Science Center, La Jolla, CA.
7. ARNASON, E., S. PALSSON, AND A. ARASON. 1992. Gene flow and lack of population differentiation in Atlantic cod, Gadus morhua L., from Iceland, and comparison of cod from Norway and Newfoundland. J. Fish Biol. 40:751-770.
8. BAIROCH, A. 1989. PC/GENE. Intelligenetics, Inc., University of Geneva, Switzerland.
9. BARTLETT, M. R., AND R. L. HAEDRICH. 1968. Newston nets and South Atlantic larval blue marlin (Makaira nigricans). Copeia 3:469-474.
10. BAYLEY, R. E., AND E. D. PRINCE. 1994. A review of tag release and recapture files for Istiophoridae from the southeast fisheries center's cooperative game fish tagging program 1954 to present. Pp. 527-548 in Report of the second ICCAT billfish workshop. Vol. XLI. ICCAT, Madrid, Spain.
11. BENTZEN, P., C. T. TAGGART, D. E. RUZZANTE, AND D. COOK. 1996. Microsatellite polymorphism and the population structure of Atlantic cod (Gadus morhua) in the northwest Atlantic. Can. J. Fish. Aquat. Sci. 53:706-2721.
12. BUROKER, N. E. 1983. Population genetic of the American oyster Crassostrea virginica along the Atlantic coast and the Gulf of Mexico. Mar. Biol. 75:99-112.
13. CRAMER, J., AND M. H. PRAGER. 1994. Exploratory surplus-production analysis of blue and white marlin fisheries in the North Atlantic. Pp. 557-560 in Report of the second ICCAT billfish workshop. Vol. XLI. ICCAT, Madrid, Spain.
14. CYR, E. C., J. M. DEAN, I JEHANGEER, AND M. NALLEE. 1990. Age, growth, and reproduction of blue marlin and black marlin from the Indian ocean. Pp. 309-316 in R. H. Stroud, ed. Planning the future of billfishes: research and management in the 90s and beyond. Part II. Contributed papers. National Coalition for Marine Conservation, Inc., Savannah, GA.
15. DAHLE, G. 1991. Cod, Gadus morhua L., populations identified by mitochondrial DNA. J. Fish Biol. 38: 295-303.
16. DE SYLVA, D. P. 1974. Life history of the Atlantic blue marlin, Makaira nigricans, with special reference to Jamaican waters. P. 80. in R. S. Shomura and F. Williams, eds. Proceedings of the international billfish symposium, Kailua-Kona, Hawaii, 9-12 August 1972. Part 2. Review and contributed papers. U.S. Dept. of Commerce, NOAA Tech. Rep., NMFS SSRS-675, Seattle, WA.
17. ERDMAN, D. S. 1968. Spawning cycle, sex ratio, and weights of blue marlin off Puerto Rico and the Virgin Islands. Trans. Am. Fish. Soc. 97:131-137.
18. ESCHMEYER, W. N. 1968. Four advanced larval specimens of the blue marlin, Makaira nigricans, from the western Atlantic Ocean. Copeia 2:414-417.
19. EXCOFFIER, L., P. E. SMOUSE, AND J. M. QUATTRO. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
20. FERGUSON, A., J. B. TAGGART, P. A. PRODOHL, O. MCMEEL, C. THOMPSON, C. STONE, P. MCGINNITY, AND R. A. HYNES. 1995. The application of molecular markers to the study and conservation of fish populations, with special reference to Salmo. J. Fish Biol. 47 (Suppl. A):103-126.
21. FICKETT, J. W. 1982. Recognition of protein coding regions in DNA sequences. Nucleic Acids Res. 10:5303-5318.
22. FINNERTY, J. R., AND B. A. BLOCK. 1992. Direct sequencing of mitochondrial DNA detects highly divergent haplotypes in blue marlin (Makaira nigricans). Mol. Mar. Biol. Biotech. 1:206-214.
23. FITZSIMMONS, N. N., C. MORITZ, C. J. LIMPUS, L. POPE, AND R. PRINCE. 1997a. Geographic structure of mitochondrial and nuclear gene polymorphisms in Australian green turtle populations and male-biased gene flow. Genetics 147:1843-54.
24. FITZSIMMONS, N. N., C. L. LIMPUS, J. A. NORMAN, A. R. GOLDIZEN, AND J. D. MILLER. 1997b. Philopatry of male marine turtles inferred from mitochondrial DNA markers. Proc. Nat. Acad. Sci., U.S.A. 94:8912-8917.
25. GALVIN, P., D. MCGREGOR, AND T. CROSS. 1995. A single locus PCR amplified minisatellite region as hypervariable genetic marker in gadoid species. Aquaculture 137:31-40.
26. GOUDET, J. 1995. FSTAT (Vers. 1.2): a computer program to calculate F-statistics. J. Hered. 86:485-486.
27. GRAVES, J. E., AND J. R. MCDOWELL. 1995. Inter-ocean genetic divergence of Istiophorid billfishes. Mar. Biol. 122:193-203.
28. GUO, S. W., AND E. A. THOMPSON. 1993. Performing the exact test of Hardy-Weinberg proportions for multiple alleles. Biometics 48:361-372.
29. HARE, M. P., S. A. KARL, AND J. C. AVISE. 1996. Anonymous nuclear DNA markers in the American oyster and their implications for the heterozygote deficiency phenomenon in marine bivalves. Mol. Biol. Evol. 13:334-345.
30. HARTL, D. L., AND A. G. CLARK. 1989. Principles of population genetics. Sinauer Associates, Sunderland, MA.
31. HOPPER, C. N. 1990. Patterns of Pacific blue marlin reproduction in Hawaiian waters. Pp. 29-39 in R. H. Stroud, ed. Planning the future of billfishes: research and management in the 90s and Beyond. Part II. Contributed papers. National Coalition for Marine Conservation Inc., Savannah, GA.
32. HOWARD, J. K., AND S. UEYANAGI. 1965. Distribution and relative abundance of billfishes (Istiophoridae) of the Pacific Ocean. Stud. Trop. Oceanogr. 2:1-134.
33. ICCAT. 1994. Collective volume of scientific papers. Vol. XLI. Report of the second ICCAT billfish workshop. ICCAT, Madrid, Spain.
34. JONES, M., W, D. CLAY, AND R. G. DANZMANN. 1996. Consevation genetics of brook trout (Salvelinus fontinalis): population structuring in Fundy National Park, New Brunswick, and eastern Canada. Can. J. Fish. Aquat. Sci. 53:2776-2791.
35. JORDE, L. B., M. J. BAMSHAD, W. S. WATKINS, R. ZENGER, A. E. FRALEY, P. A. KRAKOWIAK, K. D. CARPENTER, H. SOODYALL, T. JENKINS, AND A. R. ROGERS. 1995. Origins and affinities of modern humans: a comparison of mitochondrial and nuclear genetic data. Am. J. Hum. Genet. 57:523-538.
36. KARL, S. A., AND J. C. AVISE. 1992. Balancing selection at allozyme loci in oysters: Implications from nuclear RFLP's. Science 256: 100-102.
37. _. 1993. PCR-based assays of Mendelian polymorphisms from anonymous single-copy nuclear DNA: Techniques and applications for population genetics. Mol. Biol. Evol. 10:342-361.
38. KARL, S. A., B. W. BOWEN, AND J. C. AVISE. 1992. Global population genetic structure and male-mediated gene flow in the green turtle (Chelonia mydas): RFLP analysis of anonymous nuclear loci. Genetics 131:163-173.
39. KUME, S., AND J. JOSEPH. 1969. Size composition and sexual maturity of billfish caught by the Japanese longline fishery in the Pacific Ocean east of 120°W. Bull. Far Seas Fish. Res. Lab. (Shimizu) 2:115-162.
40. LANSMAN, R. A., R. O. SHADE, J. F. SHAPIRA, AND J. C. AVISE. 1981. The use of restriction endonucleases to measure mitochondrial DNA sequence relatedness in natural populations. III. Techniques and potential applications. J. Mol. Evol. 17:214-226.
41. LARSEN, A. H., J. SIGURJONSSON, N. OIEN, G. VIKINGSSON, AND P. PALSBOLL. 1996. Populations genetic analysis of nuclear and mitochondrial loci in skin biopsies collected from central and northeastern North Atlantic humpback whales (Megaptera novaeangliae): population identity and migratory destinations. Proc. R. Soc. Lond. Ser. B Biol. Sci. 263:1611-1618.
42. LEWIS, P. O., AND D. ZAYKIN. 1997. Genetic Data Analysis: Computer program for the analysis of allelic data. Vers. 1.0. Free distribution by authors over the internet at http://cheeunm.edu/ gda/.
43. MATSUMOTO, W. M., AND T. K. KAZAMA. 1974. Occurrence of young billfishes in the central Pacific Ocean. Pp. 238-251 in R. S. Shomura and F. Williams, eds. Proceedings of the international billfish symposium, Kailua-Kona, Hawaii, 9-12 August 1972. Part 2. Review and contributed papers. U.S. Dept. of Commerce, NOAA Tech. Rep., NMFS SSRF-675, Seattle, WA.
44. MCDONALD, J. H., B. C. VERRELLI, AND L. B. GEYER. 1996. Lack of geographic variation in anonymous nuclear polymorphisms in the American oyster, Crassostrea virginica. Mol. Biol. Evol. 13:1114-1118.
45. MORGAN, L. W. 1992. Allozyme analysis of billfish population structure. M.Sc. thesis, College of William and Mary, Williamsburg, VA.
46. MORK, J., N. RYMAN, G. STAHL, F. UTTER, AND G. SUNDERS. 1985. Genetic variation in Atlantic cod (Gadus morhua) throughout its range. Can. J. Fish. Aquat. Sci. 42:1580-1587.
47. MURPHY, R. W., J. W. SITES, JR., D. G. BUTH, AND C. H. HAUFLER. 1990. Proteins: isozyme electrophoresis. Pp. 45-126 in D. M. Hillis and C. Moritz, eds. Molecular systematics. Sinauer Associates, Sunderland, MA.
48. NAKAMURA, H. 1949. The tunas and their fisheries. Tokyo. Translated from Japanese by W. G. Van Campen. U.S. Fish Wildl. Serv. Spec. Sci. Rep. Fish. 82:1-115.
49. NAKAMURA, H., Y. TABUTA, AND S. UEYANAGI. 1953. Relation between the spawning season and the sex ratio of some fishes of the Family Istiophoridae. Contrib. Nankai Reg. Fish. Res. Lab. 1:1-8.
50. NAKAMURA, I. 1974. Some aspects of the systematics and distribution of billfishes. Pp. 45-53 in R. S. Shomura and F. Williams, eds. Proceedings of the international billfish symposium, Kailua-Kona, Hawaii, 9-12 August 1972. Part 2. Review and contributed papers. U.S. Dept. of Commerce, NOAA Tech. Rep. NMFS SSRF-675, Seattle, WA.
51. _. 1985. Billfishes of the world. Vol. 5. An annotated and illustrated catalogue of marlins, sailfishes, spearfishes, and swordfishes known to date. FAO Fish. Synop. 5:1-68.
52. NEI, M. 1972. Genetic distance between populations. Am. Nat. 106: 283-292.
53. _. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590.
54. NISHIKAWA, Y. S., S. UEYANAGI, AND S. KIKAWA. 1985. Average distribution of larvae of oceanic species of scombroid fishes 1956-1981. Far Seas Fish. Res. Lab. Jpn. S. Series 12:1-93.
55. PALUMBI, S. R., AND C. S. BAKER. 1994. Contrasting population structure from nuclear intron sequences and mtDNA of humpback whales. Mol. Biol. Evol. 11:426-435.
56. PATTON, J. C., B. J. GALLAWAY, R. G. FECHHELM, AND M. A. CRONIN. 1997. Genetic variation of microsatellite and mitochondrial DNA markers in broad whitefish (Coregonus nasus) in the Colville and Sagavanirktok Rivers in northern Alaska. Can. J. Fish. Aquat. Sci. 54:1548-1556.
57. POGSON, G. H., K. A. MESA, AND R. G. BOUTILIER. 1995. Genetic population structure and gene flow in the Atlantic cod Gadus morhua: a comparison of allozyme and nuclear RFLP loci. Genetics 139:375-385.
58. PRINCE, E. D., AND B. E. BROWN. 1994. Historical development if the ICCAT enhanced research program for billfishes. Pp. 1-3 in Report of the second ICCAT billfish workshop. Vol XLI. ICCAT, Madrid, Spain.
59. RAYMOND, M., AND F. ROUSSET. 1995. GENEPOP (Vers. 1.2): population genetics software for exact tests and ecumenicism. J. Hered. 86:248-249.
60. REEB, C. A., AND J. C. AVISE. 1990. A genetic discontinuity in a continuously distributed species: Mitochondrial DNA in the American oyster, Crassostrea virginica. Genetics 124:397-406.
61. RICE, W. R. 1989. Analyzing tables of statistical tests. Evolution 43:223-225.
62. RIVAS, L. R. 1975. Synopsis of biological data on blue marlin, Makaira nigricans (Lacepede), 1802. Pp. 1-27 in R. S. Shomura and F. Williams, eds. Proceedings of the international billfish symposium, Kailua-Kona, Hawaii, 9-12 August 1972. Part 3. Species synopses. U.S. Dept. of Commerce, NOAA Tech. Rep. NMFS SSRF-675, Seattle, WA.
63. ROSENBLATT, R. H., AND R. S. WAPLES. 1986. A genetic comparison of allopatric populations of shore fish species from the eastern and central Pacific Ocean: dispersal or vicariance? Copeia 1986: 275-284.
64. SAITOU, N., AND M. NEI. 1987. The neighbor-joining method: a new method for reconstruction of phylogenetic trees. Mol. Biol. Evol. 4:406-425.
65. SAMBROOK, J., E. F. FRITSCH, AND T. MANIATUS. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
66. SANGER, F., S. NICKLEN, AND A. R. COULSON. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Nat. Acad. Sci., USA. 74:5463-5467.
67. SCHNEIDER, S., J. KUEFFER, D. ROESSLI, AND L. EXCOFFIER. 1997. Arlequin. Vers. 1.1. A software for population genetic data analysis. University of Geneva, Switzerland.
68. SCOTT, E. L., E. D. PRINCE, AND C. D. GOODYEAR. 1990. History of the cooperative game fish tagging program in the Atlantic Ocean, Gulf of Mexico, and Caribbean Sea 1954-1987. Am. Fish. Soc. Symp. 7:841-853.
69. SHAKLEE, J. B., R. W. BRILL, AND R. ACERRA. 1983. Biochemical genetics of Pacific blue marlin, Makaira nigricans, from Hawaiian waters. Fish. Bull., U.S. 81:85-90.
70. SHAKLEE, J. B., S. R. PHELPS, AND J. SALINI. 1990a. Analysis of fish stock structure and mixed-stock fisheries by the electrophoretic characterization of allelic isozymes. Pp. 173-96 in D. H. Whitmore, ed. Electrophoretic and isoelectric focusing techniques in fisheries management. CRC Press, Boca Raton, FL.
71. SHAKLEE, J. B., F. R. ALLENDORF, D. C. MORIZOT, AND G. S. WHITT. 1990b. Gene nomenclature for protein-coding loci in fish. Trans. Am. Fish. Soc. 119:2-15.
72. SHOMURA, R. S., AND F. WILLIAMS, EDS. 1974. Proceedings of the international billfish symposium, Kailua-Kona, Hawaii, 9-12 August 1972. Part 2. Review and contributed papers. U.S. Dept. of Commerce, NOAA Tech. Rep., NMFS SSRF-675, Seattle, WA.
73. SIMMONS, G. M., M. E. KREITMAN, W. F. QUATTLEBAUM, AND N. MIYASHITA. 1989. Molecular analysis of the alleles of alcohol dehydrogenase along a cline in Drosophila melanogaster. I. Maine, North Carolina, and Florida. Evolution 43:393-409.
74. SKILLMAN, R. A. 1989. Status of Pacific billfish stocks. Pp. 179-195 in R. H. Stroud, ed. Planning the future of billfishes: research and management in the 90s and beyond. Part I. Fishery and stock synopses, data needs and management. National Coalition for Marine Conservation, Inc., Savannah, GA.
75. SOUTHERN, E. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98: 503-517.
76. STRASBURG, D. W. 1969. Billfishes of the central Pacific Ocean. U.S. Fish and Wildlife Service Circular 311.
77. TAJIMA, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. 123:585-595.
78. UEYANAGI, S., S. KIKAWA, M. UTO, AND Y. NISHIKAWA. 1970. Distribution, spawning and relative abundance of billfishes in the Atlantic Ocean. Bull. Far Seas Fish. Res. Lab. (Shimizu) 3:15-55.
79. WARD, R. D., N. G. ELLIOTT, P. M. GREWE, AND A. J. SMOLENSKI. 1994. Allozyme and mitochondrial DNA variation in yellowfin tuna (Thunnus albacares) from the Pacific Ocean. Mar. Biol. 118: 531-539.
80. WEIR, B. 1996. Genetic data analysis II. Methods for discrete population genetic data. Sinauer Associates, Sunderland, MA.
81. WEIR, B. S., AND C. C. COCKERHAM. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370.
82. WILLIAM, J., O. BALLARD, AND M. KREITMAN. 1995. Is mitochondrial DNA a strictly neutral marker? Trends Ecol. Evol. 10:485-488.
83. WINANS, G. A. 1980. Geographic variation in the milkfish Chanos chanos. I Biochemical evidence. Evolution 34:558-574.
84. WRIGHT, S. 1969. Evolution and the genetics of populations, Vol. 2. The theory of gene frequencies. The Univ. of Chicago Press, Chicago, IL.