Unravelling the evolutionary history of the polyploid complex ranunculus parnassiifolius (ranunculaceae)

Biological Journal of the Linnean Society

Volumn 107, Issue 3, 2012, Pages 477-493

  Cires, Eduardo ^a   Cuesta, Candela ^a,b   Vargas, Pablo ^c   Fernández Prieto, José Antonio ^a  

^a UNIVERSITY OF OVIEDO   (Spain)

^b DEPARTMENT OF PLANT SYSTEMS BIOLOGY   (Belgium)

^c CSIC   (Spain)

Author keywords

Biogeography; Character tracing; Molecular phylogenetics

Indexed keywords

BIOGEOGRAPHICAL REGION; DICOTYLEDON; EVOLUTIONARY BIOLOGY; MOLECULAR ANALYSIS; PHYLOGENETICS; PHYLOGEOGRAPHY; POLYPLOIDY;

ALPS; CANTABRIAN MOUNTAINS; PYRENEES; SPAIN;

EID: 84867677558     PISSN: 00244066     EISSN: 10958312     Source Type: Journal    
DOI: 10.1111/j.1095-8312.2012.01968.x     Document Type: Article

References (83)

1. Álvarez I, Wendel JF. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Molecular Phylogenetics and Evolution 29: 417-434.
2. Avise JC. 2000. Phylogeography: the history and formation of species. Cambridge, MA: Harvard University Press.
3. Baack E. 2005. Ecological factors influencing tetraploid establishment in snow buttercups (Ranunculus adoneus, Ranunculaceae): minority cytotype exclusion and barriers to triploid formation. American Journal of Botany 92: 1827-1835.
4. Balao F, Valente LM, Vargas P, Herrera J, Talavera S. 2010. Radiative evolution of polyploid races of the Iberian carnation Dianthus broteri (Caryophyllaceae). New Phytologist 187: 542-551.
5. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ. 1995. The ITS region of nuclear ribosomal DNA. A valuable source of evidence on angiosperm phylogeny. Annals of the Missouri Botanical Garden 82: 247-277.
6. Baltisberger M, Widmer A. 2009. Chromosome numbers and karyotypes within the Ranunculus alpestris-group (Ranunculaceae). Organisms Diversity & Evolution 9: 232-243.
7. Bueno Sánchez A, Fernández Casado MA, Fernández Prieto JA. 1992. A new subspecies of Ranunculus parnassiifolius L. (Ranunculaceae) from the Cantabrian Mountains, Spain. Botanical Journal of the Linnean Society 109: 359-367.
8. Burnier J, Buerki S, Arrigo N, Küpfer P, Alvarez N. 2009. Genetic structure and evolution of Alpine polyploid complexes: Ranunculus kuepferi (Ranunculaceae) as a case study. Molecular Ecology 18: 3730-3744.
9. Carrillo i Ortuño E, Ninot i Sugranyes JM. 1992. Flora i vegetació de les valls d'Espot i Boí. Barcelona: Institut d'Estudis Catalans, Arxius Secció Ciències.
10. Cires E, Cuesta C, Peredo EL, Revilla MA, Fernández Prieto JA. 2009. Genome size variation and morphological differentiation within Ranunculus parnassifolius group (Ranunculaceae) from calcareous screes in the Northwest of Spain. Plant Systematics and Evolution 281: 193-208.
11. Cires E, Cuesta C, Revilla MA, Fernández Prieto JA. 2010. Intraspecific genome size variation and morphological differentiation of Ranunculus parnassifolius (Ranunculaceae), an Alpine-Pyrenean-Cantabrian polyploid group. Biological Journal of the Linnean Society 101: 251-271.
12. Cires E, Fernández Prieto JA. 2012. The Iberian endemic species Ranunculus cabrerensis Rothm.: an intricate history in the Ranunculus parnassiifolius L. polyploid complex. Plant Systematics and Evolution 298: 121-138.
13. Clement M, Posada D, Crandall KA. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1659.
14. Comes HP, Abbott RJ. 2001. Molecular phylogeography, reticulation, and lineage sorting in Mediterranean Senecio sect. Senecio (Asteraceae). Evolution 55: 1943-1962.
15. Comes HP, Kadereit JK. 2003. Spatial and temporal patterns in the evolution of the flora of the European Alpine system. Taxon 52: 451-462.
16. Cook CDK, Grau J, López González G. 1986. Ranunculus L. Sect. Ranuncella (Spach) Freyn. In: Castroviejo S, Laínz M, López González G, Montserrat P, Muñoz Garmendia F, Paiva J, Villar L, eds. Flora Iberica. I. Lycopodiaceae-papaveraceae. Madrid: Real Jardín Botánico, C.S.I.C., 279-371.
17. Dixon CJ, Schönswetter P, Vargas P, Ertl S, Schneeweiss GM. 2009. Bayesian hypothesis testing supports long-distance Pleistocene migrations in a European high mountain plant (Androsace vitaliana, Primulaceae). Molecular Phylogenetics and Evolution 53: 580-591.
18. Doyle JJ, Doyle JL. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19: 11-15.
19. Dumolin-Lapègue S, Pemonge M-H, Petit RJ. 1997. An enlarged set of consensus primers for the study of organelle DNA in plant. Molecular Ecology 6: 393-397.
20. Emadzade K, Gehrke B, Linder HP, Hörandl E. 2011. The biogeographical history of the cosmopolitan genus Ranunculus L. (Ranunculaceae) in the temperate to meridional zones. Molecular Phylogenetics and Evolution 58: 4-21.
21. Emadzade K, Hörandl E. 2011. Northern Hemisphere origin, transoceanic dispersal, and diversification of Ranunculeae DC. (Ranunculaceae) in the Cenozoic. Journal of Biogeography 38: 517-530.
22. Emadzade K, Lehnebach C, Lockhart P, Hörandl E. 2010. A molecular phylogeny, morphology and classification of genera of Ranunculeae (Ranunculaceae). Taxon 59: 809-828.
23. Favarger C. 1975. Cytotaxonomie et histoire de la flore orophile des Alpes et de quelques autres massifs montagneux d'Europe. Lejeunia, Nouvelle Série 77: 1-45.
24. Favarger C, Küpfer P. 1968. Contribution à la cytotaxonomie de la flore alpine des Pyrénées. Collectanea Botanica (Barcelona) 7: 325-357.
25. Frajman B, Oxelman B. 2007. Reticulate phylogenetics and phytogeographical structure of Heliosperma (Sileneae, Caryophyllaceae) inferred from chloroplast and nuclear DNA sequences. Molecular Phylogenetics and Evolution 43: 140-155.
26. GBIF. 2011. Global biodiversity information facility. Available at: http://www.gbif.org/
27. Gehrke B, Linder H. 2009. The scramble for Africa: pan-temperate elements on the African high mountains. Proceedings of the Royal Society of London B Biological Sciences 276: 2657-2665.
28. Goepfert D. 1974. Karyotypes and DNA content in species of Ranunculus L. and related genera. Botaniska Notiser 127: 464-489.
29. Guinea López E. 1953. Geografía botánica de Santander. Santander: Publicaciones de la Excelentísima Diputación Provincial de Santander (Imprenta Provincial de Santander).
30. Hoffmann MH, von Hagen KB, Hörandl E, Röser M, Tkach NV. 2010. Sources of the arctic flora: origins of arctic species in Ranunculus and related genera. International Journal of Plant Sciences 171: 90-106.
31. Hörandl E. 2009. Geographical parthenogenesis: opportunities for asexuality. In: Schoen I, Martens K, Van Dijk P, eds. Lost sex. Heidelberg: Springer, 161-186.
32. Hörandl E, Cosendai A-C, Temsch E. 2008. Understanding the geographic distributions of apomictic plants: a case for a pluralistic approach. Plant Ecology & Diversity 1: 309-320.
33. Hörandl E, Paun O, Johansson JT, Lehnebach C, Armstrong T, Chen L, Lockhart P. 2005. Phylogenetic relationships and evolutionary traits in Ranunculus s.l. (Ranunculaceae) inferred from ITS sequence analysis. Molecular Phylogenetics and Evolution 36: 305-327.
34. Hüber W. 1988. Natürliche Bastardierungen zwischen weissblühenden Ranunculus-Arten in den Alpen. Veröffentlichungen des Geobotanischen Institutes Rübel. Zürich 100: 1-160.
35. Hudson RR. 2000. A new statistic for detecting genetic differentiation. Genetics 155: 2011-2014.
36. Hudson RR, Boos DD, Kaplan NL. 1992a. A statistical test for detecting geographic subdivision. Molecular Phylogenetics and Evolution 9: 138-151.
37. Hudson RR, Slatkin M, Maddison WP. 1992b. Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
38. Jalas J, Suominen J, eds. 1989. Atlas Florae Europaeae. Distribution of vascular plants in Europe. 8. Nymphaeaceae to Ranunculaceae. Helsinki: The Committee for Mapping the Flora of Europe and Societas Biologica Fennica Vanamo.
39. Johansson JT. 1998. Chloroplast DNA restriction site mapping and the phylogeny of Ranunculus (Ranunculaceae). Plant Systematics and Evolution 213: 1-19.
40. Kovarik A, Pires JC, Leitch AR, Lim KY, Sherwood AM, Matyasek R, Rocca J, Soltis DE, Soltis PS. 2005. Rapid concerted evolution of nuclear ribosomal DNA in two Tragopogon allopolyploids of recent and recurrent origin. Genetics 169: 931-944.
41. Kropf M, Comes HP, Kadereit JW. 2008. Causes of the genetic architecture of southwest European high mountain disjuncts. Plant Ecology & Diversity 1: 217-228.
42. Kropf M, Kadereit JW, Comes HP. 2002. Late Quaternary distributional stasis in the submediterranean mountain plant Anthyllis montana L. (Fabaceae) inferred from ITS sequences and amplified fragment length polymorphism markers. Molecular Ecology 11: 447-463.
43. Kropf M, Kadereit JW, Comes HP. 2003. Differential cycles of range contraction and expansion in European high mountain plants during the late Quaternary: insights from Pritzelago alpina (L.) O. Kuntze (Brassicaceae). Molecular Ecology 12: 931-949.
44. Küpfer P. 1974. Reserches sur les liens de parenté entre la flore orophile des Alpes et celle des Pyrénées. Boissiera 23: 1-322.
45. Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
46. Linnaeus C. 1753. Species plantarum, exhibentes plantas rite cognitas, ad genera relatas, cum differentiis specificis, nominibus trivialibus, synonymis selectis, locis natalibus, secundum systema sexuale digestas. Holmiae [Stockholm]: Impensis Laurentii Salvii.
47. Lockhart P, McLechnanan PA, Havell D, Glenny D, Huson D, Jensen U. 2001. Phylogeny, dispersal and radiation of New Zealand alpine buttercups: molecular evidence under split decomposition. Annals of the Missouri Botanical Garden 88: 458-477.
48. Maddison WP, Maddison DR. 2009. Mesquite: a modular system for evolutionary analysis, Version 2.7. Available at: http://mesquiteproject.org
49. McNeill J, Barrie FR, Burdet HM, Demoulin V, Hawksworth DL, Marhold K, Nicolson DH, Prado J, Silva PC, Skog JE, Wiersema JH, Turland NJ, eds. 2006. International Code of Botanical Nomenclature (Vienna Code) adopted by the Seventeenth International Botanical Congress Vienna, Austria, July 2005. Ruggell: Gantner [Regnum Vegetabile 146].
50. Nylander JAA. 2004. MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University. Available at: http://www.abc.se/~nylander/
51. Olsson U, Alström P, Gelang M, Ericsson PG, Sundberg P. 2006. Phylogeography of Indonesian and Sino-Himalayan bush warblers (Cettia, Aves). Molecular Phylogenetics and Evolution 41: 556-561.
52. Paun O, Lehnebach C, Johansson JT, Lockhart P, Hörandl E. 2005. Phylogenetic relationships and biogeography of Ranunculus and allied genera (Ranunculaceae) in the Mediterranean region and in the European alpine system. Taxon 54: 911-930.
53. Puşcaş M, Choler P, Tribsch A, Gielly L, Rioux D, Gaudeul M, Taberlet P. 2008. Post-glacial history of the dominant alpine sedge Carex curvula in the European Alpine System inferred from nuclear and chloroplast markers. Molecular Ecology 17: 2417-2429.
54. Rauscher JT, Doyle JJ, Brown AHD. 2004. Multiple origins and nrDNA internal transcribed spacer homologue evolution in the Glycine tomentella (Leguminosae) allopolyploid complex. Genetics 166: 987-998.
55. Rhymer JM, Simberloff D. 1996. Extinction by hybridization and introgression. Annual Review of Ecology and Systematics 27: 83-109.
56. Rieseberg LH, Soltis DE. 1991. Phylogenetic consequences of cytoplasmic gene flow in plants. Evolutionary Trends in Plants 5: 65-84.
57. Ronquist F, Huelsenbeck JP. 2003. MrBayes3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
58. Rothmaler W. 1934. Species novae vel nomina nova florae hispanicae. Boletín de la Sociedad Española de Historia Natural 34: 147-155.
59. Saltonstall K. 2001. A set of primers for amplification of noncoding regions of chloroplast DNA in the grasses. Molecular Ecology Notes 1: 76-78.
60. Sang T, Crawford D, Stuessy T. 1997. Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). American Journal of Botany 84: 1120-1136.
61. Sanmartín I, Mark PVD, Ronquist F. 2008. Inferring dispersal: a Bayesian approach to phylogeny-based island biogeography, with special reference to the Canary Islands. Journal of Biogeography 35: 428-449.
62. Scherff EJ, Galen C, Stanton ML. 1994. Seed dispersal, seedling survival and habitat affinity in a snowbed plant: limits to the distribution of the snow buttercup, Ranunculus adoneus. Oikos 69: 405-413.
63. Shaw J, Lickey EB, Beck JT, Farmer SB, Liu W, Miller J, Siripun KC, Winder CT, Schilling EE, Small RL. 2005. The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis. American Journal of Botany 92: 142- 166.
64. Shaw J, Lickey EB, Schilling EE, Small RL. 2007. Comparison of whole chloroplast genome sequences to choose noncoding regions for phylogenetic studies in angiosperms: the tortoise and the hare III. American Journal of Botany 94: 275-288.
65. Small RL, Ryburn JA, Cronn RC, Seelanan T, Wendel JF. 1998. The tortoise and the hare: choosing between noncoding plastome and nuclear ADH sequences for phylogeny reconstruction in a recently diverged plant group. American Journal of Botany 85: 1301-1315.
66. Soltis DE, Albert VA, Leebens-Mack J, Bell CD, Paterson AH, Zheng C, Sankoff D, dePamphilis CW, Wall PK, Soltis PS. 2009. Polyploidy and angiosperm diversification. American Journal of Botany 96: 336- 348.
67. Soltis DE, Soltis PS. 1999. Polyploidy: recurrent formation and genome evolution. Trends in Ecology & Evolution 14: 348-352.
68. Soltis PS, Soltis DE. 2000. The role of genetic and genomic attributes in the success of polyploids. Proceedings of the National Academy of Sciences of the United States of America 97: 7051-7057.
69. Stebbins GL. 1984. Polyploidy and the distribution of the arctic-alpine flora: new evidence and a new approach. Botanica Helvetica 94: 1-14.
70. Sun Y, Skinner DZ, Liang GH, Hulbert SH. 1994. Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA. Theoretical and Applied Genetics 89: 26-32.
71. Tamura M. 1993. Ranunculaceae. In: Kubitzki K, Rohwer JG, Bittrich V, eds. The families and genera of vascular plants. 2. Flowering plants. Dicotyledons, Magnoliid, Hamamelid, and Caryophyllid families. Berlin: Springer, 563-583.
72. Tamura M. 1995. Angiospermae. Ordnung Ranunculales. Fam. Ranunculaceae. II. Systematic Part. In: Hiepko P, ed. Die natürliche Pflanzenfamilien, 2nd edn. 17aIV. Berlin: Duncker & Humblot, 223-519.
73. Tate JA, Simpson BB. 2003. Paraphyly of Tarasa (Malvaceae) and diverse origins of the polyploid species. Systematic Botany 28: 723-737.
74. Templeton AR, Crandall KA, Sing CF. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619-633.
75. Tournefort JP. 1700. Institutiones rei herbariae. Editio altera. Paris: E Typographia Regia.
76. Tutin TG, Akeroyd JR. 1993. Ranunculus L. In: Tutin TG, Burges NA, Chater AO, Edmondson JR, Heywood VH, Moore DM, Valentine DH, Walters SM, Webb DA, eds. Flora europaea, 2nd edn. 1. Psilotaceae to Platanaceae. Cambridge, MA: Cambridge University Press, 269-286.
77. Vargas P. 2003. Molecular evidence for multiple diversification patterns of alpine plants in Mediterranean Europe. Taxon 52: 463-476.
78. Vigo i Bonada J. 1983. El poblament vegetal de la Vall de Ribes. I. Generalitats catàleg floristic. Acta Botanica Barcinonensia 35: 1-793.
79. Wang CB, Smith TB. 2002. Closing the seed dispersal loop. Trends in Ecology & Evolution 17: 379-385.
80. Winkworth RC, Wagstaff SJ, Glenny D, Lockhart PJ. 2005. Evolution of the New Zealand mountain flora: origins, diversification and dispersal. Organisms Diversity & Evolution 5: 237-247.
81. Yu Y, Harris AJ, He XJ. 2010. S-DIVA (Statistical Dispersal-Vicariance Analysis): a tool for inferring biogeographic histories. Molecular Phylogenetics and Evolution 56: 848- 850.
82. Yu Y, Harris AJ, He XJ. 2011. RASP (Reconstruct Ancestral State in Phylogenies) Beta 1. Available at: http://mnh.scu.edu.cn/soft/blog/RASP
83. Ziman SN, Keener CS. 1989. A geographical analysis of the family Ranunculaceae. Annals of the Missouri Botanical Garden 76: 1012-1049.