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Volumn 18, Issue 11, 2012, Pages 2056-2072

The multiple Tudor domain-containing protein TDRD1 is a molecular scaffold for mouse Piwi proteins and piRNA biogenesis factors

Author keywords

Extended Tudor domain; Methylated arginine; piRNA; Piwi protein; X ray crystallography

Indexed keywords

ARGININE DERIVATIVE; METHYLARGININE PEPTIDE; MOLECULAR SCAFFOLD; PIWI INTERACTING RNA; PIWI PROTEIN; SCAFFOLD PROTEIN; TUDOR DOMAIN CONTAINING PROTEIN; UNCLASSIFIED DRUG;

EID: 84867667939     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.034181.112     Document Type: Article
Times cited : (39)

References (56)
  • 3
    • 77955339860 scopus 로고    scopus 로고
    • Building RNA-protein granules: Insight from the germline
    • Arkov AL, Ramos A. 2010. Building RNA-protein granules: Insight from the germline. Trends Cell Biol 20: 482-490.
    • (2010) Trends Cell Biol , vol.20 , pp. 482-490
    • Arkov, A.L.1    Ramos, A.2
  • 4
    • 33947273235 scopus 로고    scopus 로고
    • Discrete Small RNA-Generating Loci as Master Regulators of Transposon Activity in Drosophila
    • DOI 10.1016/j.cell.2007.01.043, PII S0092867407002577
    • Brennecke J, Aravin AA, Stark A, Dus M, Kellis M, Sachidanandam R, Hannon GJ. 2007. Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila. Cell 128: 1089-1103. (Pubitemid 46427877)
    • (2007) Cell , vol.128 , Issue.6 , pp. 1089-1103
    • Brennecke, J.1    Aravin, A.A.2    Stark, A.3    Dus, M.4    Kellis, M.5    Sachidanandam, R.6    Hannon, G.J.7
  • 5
    • 0036828639 scopus 로고    scopus 로고
    • The Argonaute family: Tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis
    • DOI 10.1101/gad.1026102
    • Carmell MA, Xuan Z, Zhang MQ, Hannon GJ. 2002. The Argonaute family: Tentacles that reach into RNAi, developmental control, stem cell maintenance, and tumorigenesis. Genes Dev 16: 2733-2742. (Pubitemid 35253139)
    • (2002) Genes and Development , vol.16 , Issue.21 , pp. 2733-2742
    • Carmell, M.A.1    Xuan, Z.2    Zhang, M.Q.3    Hannon, G.J.4
  • 6
    • 80053132089 scopus 로고    scopus 로고
    • Deciphering arginine methylation: Tudor tells the tale
    • Chen C, Nott TJ, Jin J, Pawson T. 2011. Deciphering arginine methylation: Tudor tells the tale. Nat Rev Mol Cell Biol 12: 629-642.
    • (2011) Nat Rev Mol Cell Biol , vol.12 , pp. 629-642
    • Chen, C.1    Nott, T.J.2    Jin, J.3    Pawson, T.4
  • 7
    • 0141672165 scopus 로고    scopus 로고
    • Mouse Tudor Repeat-1 (MTR-1) is a novel component of chromatoid bodies/nuages in male germ cells and forms a complex with snRNPs
    • DOI 10.1016/S0925-4773(03)00181-3
    • Chuma S, Hiyoshi M, Yamamoto A, Hosokawa M, Takamune K, Nakatsuji N. 2003. Mouse Tudor Repeat-1 (MTR-1) is a novel component of chromatoid bodies/nuages in male germ cells and forms a complex with snRNPs. Mech Dev 120: 979-990. (Pubitemid 37205042)
    • (2003) Mechanisms of Development , vol.120 , Issue.9 , pp. 979-990
    • Chuma, S.1    Hiyoshi, M.2    Yamamoto, A.3    Hosokawa, M.4    Takamune, K.5    Nakatsuji, N.6
  • 8
    • 3242886389 scopus 로고    scopus 로고
    • MolProbity: Structure validation and all-atom contact analysis for nucleic acids and their complexes
    • DOI 10.1093/nar/gkh398
    • Davis IW, Murray LW, Richardson JS, Richardson DC. 2004. MOLPROBITY: Structure validation and all-atom contact analysis for nucleic acids and their complexes. Nucleic Acids Res 32: W615-W619. (Pubitemid 38997409)
    • (2004) Nucleic Acids Research , vol.32 , Issue.WEB SERVER ISS.
    • Davis, I.W.1    Murray, L.W.2    Richardson, J.S.3    Richardson, D.C.4
  • 10
    • 0031058188 scopus 로고    scopus 로고
    • Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
    • DOI 10.1016/S0076-6879(97)76073-7
    • de La Fortelle E, Bricogne G. 1997. Heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. In Methods in Enzymology, Vol 276 (ed. CW Carter Jr, RM Sweet), pp. 472-494. Academic Press, Inc., San Diego, CA. (Pubitemid 27085618)
    • (1997) Methods in Enzymology , vol.276 , pp. 472-494
    • De La Fortelle, E.1    Bricogne, G.2
  • 12
    • 38349169664 scopus 로고    scopus 로고
    • Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight?
    • Filipowicz W, Bhattacharyya SN, Sonenberg N. 2008. Mechanisms of post-transcriptional regulation by microRNAs: Are the answers in sight? Nat Rev Genet 9: 102-114.
    • (2008) Nat Rev Genet , vol.9 , pp. 102-114
    • Filipowicz, W.1    Bhattacharyya, S.N.2    Sonenberg, N.3
  • 13
    • 62649139615 scopus 로고    scopus 로고
    • DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering
    • Franke D, Svergun DI. 2009. DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering. J Appl Crystallogr 42: 342-346.
    • (2009) J Appl Crystallogr , vol.42 , pp. 342-346
    • Franke, D.1    Svergun, D.I.2
  • 14
    • 58449134534 scopus 로고    scopus 로고
    • Small silencing RNAs: An expanding universe
    • Ghildiyal M, Zamore PD. 2009. Small silencing RNAs: An expanding universe. Nat Rev Genet 10: 94-108.
    • (2009) Nat Rev Genet , vol.10 , pp. 94-108
    • Ghildiyal, M.1    Zamore, P.D.2
  • 15
    • 33745336617 scopus 로고    scopus 로고
    • A germline-specific class of small RNAs binds mammalian Piwi proteins
    • DOI 10.1038/nature04917, PII NATURE04917
    • Girard A, Sachidanandam R, Hannon GJ, Carmell MA. 2006. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature 442: 199-202. (Pubitemid 44086566)
    • (2006) Nature , vol.442 , Issue.7099 , pp. 199-202
    • Girard, A.1    Sachidanandam, R.2    Hannon, G.J.3    Carmell, M.A.4
  • 16
    • 33947390781 scopus 로고    scopus 로고
    • A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila
    • DOI 10.1126/science.1140494
    • Gunawardane LS, Saito K, Nishida KM, Miyoshi K, Kawamura Y, Nagami T, Siomi H, Siomi MC. 2007. A slicer-mediated mechanism for repeat-associated siRNA 5′ end formation in Drosophila. Science 315: 1587-1590. (Pubitemid 46449477)
    • (2007) Science , vol.315 , Issue.5818 , pp. 1587-1590
    • Gunawardane, L.S.1    Saito, K.2    Nishida, K.M.3    Miyoshi, K.4    Kawamura, Y.5    Nagami, T.6    Siomi, H.7    Siomi, M.C.8
  • 17
    • 84860389782 scopus 로고    scopus 로고
    • A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors
    • Handler D, Olivieri D, Novatchkova M, Gruber FS, Meixner K, Mechtler K, Stark A, Sachidanandam R, Brennecke J. 2011. A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors. EMBO J 30: 3977-3993.
    • (2011) EMBO J , vol.30 , pp. 3977-3993
    • Handler, D.1    Olivieri, D.2    Novatchkova, M.3    Gruber, F.S.4    Meixner, K.5    Mechtler, K.6    Stark, A.7    Sachidanandam, R.8    Brennecke, J.9
  • 19
    • 79952509006 scopus 로고    scopus 로고
    • PiRNA-associated germline nuage formation and spermatogenesis require MitoPLD profusogenic mitochondrial-surface lipid signaling
    • Huang H, Gao Q, Peng X, Choi SY, Sarma K, Ren H, Morris AJ, Frohman MA. 2011. piRNA-associated germline nuage formation and spermatogenesis require MitoPLD profusogenic mitochondrial-surface lipid signaling. Dev Cell 20: 376-387.
    • (2011) Dev Cell , vol.20 , pp. 376-387
    • Huang, H.1    Gao, Q.2    Peng, X.3    Choi, S.Y.4    Sarma, K.5    Ren, H.6    Morris, A.J.7    Frohman, M.A.8
  • 20
    • 0027879008 scopus 로고
    • Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
    • Kabsch W. 1993. Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants. J Appl Crystallogr 26: 795-800.
    • (1993) J Appl Crystallogr , vol.26 , pp. 795-800
    • Kabsch, W.1
  • 27
    • 0024411890 scopus 로고
    • The protein encoded by a murine male germ cell-specific transcript is a putative ATP-dependent RNA helicase
    • DOI 10.1016/0092-8674(89)90125-6
    • Leroy P, Alzari P, Sassoon D, Wolgemuth D, Fellous M. 1989. The protein encoded by a murine male germ cell-specific transcript is a putative ATP-dependent RNA helicase. Cell 57: 549-559. (Pubitemid 19140642)
    • (1989) Cell , vol.57 , Issue.4 , pp. 549-559
    • Leroy, P.1    Alzari, P.2    Sassoon, D.3    Wolgemuth, D.4    Fellous, M.5
  • 29
    • 77956271553 scopus 로고    scopus 로고
    • Structural basis for methylarginine-dependent recognition of Aubergine by Tudor
    • Liu H, Wang JY, Huang Y, Li Z, Gong W, Lehmann R, Xu RM. 2010a. Structural basis for methylarginine-dependent recognition of Aubergine by Tudor. Genes Dev 24: 1876-1881.
    • (2010) Genes Dev , vol.24 , pp. 1876-1881
    • Liu, H.1    Wang, J.Y.2    Huang, Y.3    Li, Z.4    Gong, W.5    Lehmann, R.6    Xu, R.M.7
  • 36
    • 77951288138 scopus 로고    scopus 로고
    • Repression of retroelements in Drosophila germline via piRNA pathway by the Tudor domain protein Tejas
    • Patil VS, Kai T. 2010. Repression of retroelements in Drosophila germline via piRNA pathway by the Tudor domain protein Tejas. Curr Biol 20: 724-730.
    • (2010) Curr Biol , vol.20 , pp. 724-730
    • Patil, V.S.1    Kai, T.2
  • 38
    • 0032964481 scopus 로고    scopus 로고
    • Automated protein model building combined with iterative structure refinement
    • DOI 10.1038/8263
    • Perrakis A, Morris R, Lamzin VS. 1999. Automated protein model building combined with iterative structure refinement. Nat Struct Biol 6: 458-463. (Pubitemid 29218016)
    • (1999) Nature Structural Biology , vol.6 , Issue.5 , pp. 458-463
    • Perrakis, A.1    Morris, R.2    Lamzin, V.S.3
  • 39
    • 23244455562 scopus 로고    scopus 로고
    • Global rigid body modeling of macromolecular complexes against small-angle scattering data
    • DOI 10.1529/biophysj.105.064154
    • Petoukhov MV, Svergun DI. 2005. Global rigid body modeling of macromolecular complexes against small-angle scattering data. Biophys J 89: 1237-1250. (Pubitemid 41099005)
    • (2005) Biophysical Journal , vol.89 , Issue.2 , pp. 1237-1250
    • Petoukhov, M.V.1    Svergun, D.I.2
  • 40
    • 67349141725 scopus 로고    scopus 로고
    • Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile
    • Reuter M, Chuma S, Tanaka T, Franz T, Stark A, Pillai RS. 2009. Loss of the Mili-interacting Tudor domain-containing protein-1 activates transposons and alters the Mili-associated small RNA profile. Nat Struct Mol Biol 16: 639-646.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 639-646
    • Reuter, M.1    Chuma, S.2    Tanaka, T.3    Franz, T.4    Stark, A.5    Pillai, R.S.6
  • 42
  • 44
    • 78149481868 scopus 로고    scopus 로고
    • The piRNA pathway: A fly's perspective on the guardian of the genome
    • Senti KA, Brennecke J. 2010. The piRNA pathway: A fly's perspective on the guardian of the genome. Trends Genet 26: 499-509.
    • (2010) Trends Genet , vol.26 , pp. 499-509
    • Senti, K.A.1    Brennecke, J.2
  • 45
  • 49
    • 0345293146 scopus 로고    scopus 로고
    • On the Value of c: Can Low Affinity Systems Be Studied by Isothermal Titration Calorimetry?
    • DOI 10.1021/ja036166s
    • Turnbull WB, Daranas AH. 2003. On the value of c: Can low affinity systems be studied by isothermal titration calorimetry? J Am Chem Soc 125: 14859-14866. (Pubitemid 37475576)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.48 , pp. 14859-14866
    • Turnbull, W.B.1    Daranas, A.H.2
  • 50
    • 33746502166 scopus 로고    scopus 로고
    • A distinct small RNA pathway silences selfish genetic elements in the germline
    • DOI 10.1126/science.1129333
    • Vagin VV, Sigova A, Li C, Seitz H, Gvozdev V, Zamore PD. 2006. A distinct small RNA pathway silences selfish genetic elements in the germline. Science 313: 320-324. (Pubitemid 44480950)
    • (2006) Science , vol.313 , Issue.5785 , pp. 320-324
    • Vagin, V.V.1    Sigova, A.2    Li, C.3    Seitz, H.4    Gvozdev, V.5    Zamore, P.D.6
  • 52
    • 0037701585 scopus 로고    scopus 로고
    • Uniqueness of ab initio shape determination in small-angle scattering
    • Volkov VV, Svergun DI. 2003. Uniqueness of ab initio shape determination in small-angle scattering. J Appl Crystallogr 36: 860-864.
    • (2003) J Appl Crystallogr , vol.36 , pp. 860-864
    • Volkov, V.V.1    Svergun, D.I.2
  • 53
    • 77956792181 scopus 로고    scopus 로고
    • Elective affinities: A Tudor-Aubergine tale of germline partnership
    • Vourekas A, Kirino Y, Mourelatos Z. 2010. Elective affinities: A Tudor-Aubergine tale of germline partnership. Genes Dev 24: 1963-1966.
    • (2010) Genes Dev , vol.24 , pp. 1963-1966
    • Vourekas, A.1    Kirino, Y.2    Mourelatos, Z.3
  • 54
    • 65049088735 scopus 로고    scopus 로고
    • Mili interacts with Tudor Domain Containing Protein 1 in regulating spermatogenesis
    • Wang J, Saxe JP, Tanaka T, Chuma S, Lin H. 2009a. Mili interacts with Tudor Domain Containing Protein 1 in regulating spermatogenesis. Curr Biol 19: 640-644.
    • (2009) Curr Biol , vol.19 , pp. 640-644
    • Wang, J.1    Saxe, J.P.2    Tanaka, T.3    Chuma, S.4    Lin, H.5
  • 55
    • 70349961432 scopus 로고    scopus 로고
    • Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes
    • Wang Y, Juranek S, Li H, Sheng G, Wardle GS, Tuschl T, Patel DJ. 2009b. Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes. Nature 461: 754-761.
    • (2009) Nature , vol.461 , pp. 754-761
    • Wang, Y.1    Juranek, S.2    Li, H.3    Sheng, G.4    Wardle, G.S.5    Tuschl, T.6    Patel, D.J.7
  • 56
    • 0024356301 scopus 로고
    • Rapid measurement of binding constants and heats of binding using a new titration calorimeter
    • DOI 10.1016/0003-2697(89)90213-3
    • Wiseman T, Williston S, Brandts JF, Lin LN. 1989. Rapid measurement of binding constants and heats of binding using a new titration calorimeter. Anal Biochem 179: 131-137. (Pubitemid 19149635)
    • (1989) Analytical Biochemistry , vol.179 , Issue.1 , pp. 131-137
    • Wiseman, T.1    Williston, S.2    Brandts, J.F.3    Lin, L.-N.4


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