Unusual optical resolution of all four tryptophan residues in mpt63 protein by phosphorescence spectroscopy: Assignment and significance

Journal of Physical Chemistry B

Volumn 116, Issue 41, 2012, Pages 12489-12500

  Ghosh, Ranendu ^a   Mukherjee, Manini ^b   Chattopadhyay, Krishnananda ^a   Ghosh, Sanjib ^b  

^a INDIAN INSTITUTE OF CHEMICAL BIOLOGY   (India)

^b PRESIDENCY UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

ENERGY TRANSFER; LIGHT EMISSION; PHOSPHORESCENCE; PROTEINS; SPECTROSCOPY;

ACCESSIBLE SURFACE AREAS; AMINO ACID SEQUENCE; MYCOBACTERIUM TUBERCULOSIS; OPTICAL RESOLUTION; PARTIALLY EXPOSED; PHENYL-ALANINE; PHOSPHORESCENCE SPECTRA; POTENTIAL DRUG; PROTEIN ARCHITECTURES; SECONDARY AND TERTIARY STRUCTURES; SECRETED PROTEIN; TIME-RESOLVED ANISOTROPY; TIME-RESOLVED SPECTRA; TRIPLET STATE ENERGIES; TRYPTOPHAN RESIDUES; WILD TYPES;

AMINO ACIDS;

EID: 84867660807     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp307526f     Document Type: Article

References (58)

1. Wasylewski, Z.; Koloczek, H.; Wasniowska, A. Eur. J. Biochem. 1988, 172, 719-724
2. Lakowicz, J. R. Principles of Fluorescence Spectroscopy; Kluwer/Plenum Press: New York, 1999; Chapter 7.
3. Hahn, D. K.; Callis, P. R. J. Phys. Chem. A 1997, 101, 2686-2691
4. Purkey, It. M.; Galley, W. C. Biochemistry 1970, 9, 3569-3575
5. Hershberger, M. V.; Maki, A. H.; Galley, W. C. Biochemistry 1980, 19, 2204-2209
6. Von Shutz, J. U.; Zuclich, J. A.; Maki, A. H. J. Am. Chem. Soc. 1974, 96, 714-718
7. Kwiram, A. L.; Ross, J. B. A. Annu. Rev. Biophys. Bioeng. 1982, 11, 223-249
8. Lam, W. C.; Maki, A. H.; Itoh, T.; Hakoshima, T. Biochemistry 1992, 31, 6751-6760
9. Mukhopadhyay, S.; Maity, S. S.; Roy, A.; Chattopadhyay, D.; Ghosh, K. S.; Dasgupta, S.; Ghosh, S. Biochimie 2010, 92, 136-146
10. Ozarowski, A.; Barry, J. K.; Matthews, K. S.; Maki, A. H. Biochemistry 1999, 38, 6715-6722
11. Callis, P. R.; Liu, T. J. Phys. Chem. B 2004, 108, 4248-4259
12. Ghosh, S.; Misra, A.; Ozarowski, A.; Stuart, C.; Maki, A. H. Biochemistry 2001, 40, 15024-15030
13. Ghosh, S.; Misra, A.; Ozarowski, A.; Maki, A. H. J. Phys. Chem. B 2003, 107, 11520-11526
14. Mukherjee, M.; Saha Sardar, P.; Ghorai, S.; Samanta, S.; Singha Roy, A.; Dasgupta, S.; Ghosh, S. J. Photochem. Photobiol. B: Biol. 2012, 115, 93-104
15. Li, Z.; Bruce, A.; Galley, W. C. Biophys. J. 1992, 61, 1364-1371
16. Eftink, M. R. In AdVances in Biophysical Chemistry; Bush, C. A., Ed.; JAI Press: Greenwich, CT, 1992; Vol. 2, pp 81-114.
17. Galley, W. C.; Williams, R. E.; Goodfriend, L. Biochemistry 1982, 21, 378-383
18. Davis, J. M.; Maki, A. H. Biochemistry 1984, 23, 6249-6256
19. Strambini, G. B.; Gabellieri, E. Biochemistry 1989, 28, 160-166
20. Ghosh, S.; Zang, L. H.; Maki, A. H. J. Chem. Phys. 1988, 88, 2769-2775
21. Zang, L. H.; Ghosh, S.; Maki, A. H. Biochemistry 1988, 27, 7820-7825
22. Zang, L. H.; Ghosh, S.; Maki, A. H. Biophys. J. 1988, 53, 2245-2251
23. Zang, L. H.; Ghosh, S.; Maki, A. H. Biochemistry 1989, 28, 2245-2251
24. Strambini, G. B.; Lehrer, S. S. Eur. J. Biochem. 1991, 195, 645-651
25. Bódis, E.; Strambini, G. B.; Gonnelli, M.; Csizmadia, A. M.; Somogyi, B. Biophys. J. 2004, 87, 1146-1154
26. Cioni, P.; Onuffer, J. J.; Strambini, G. B. Eur. J. Biochem. 1992, 209, 759-764
27. Cioni, P.; Puntoni, A.; Strambini, G. B. Biophys. Chem. 1993, 46, 47-55
28. Eftink, M. R.; Ramsay, G. D.; Burns, L.; Maki, A. H.; Mann, C. J.; Matthews, C. R.; Ghiron, C. A. Biochemistry 1993, 32, 9189-9198
29. Broos, J.; Strambini, G. B.; Gonnelli, M.; Vos, E. P. P.; Koolhof, M.; Robillard, G. T. Biochemistry 2000, 39, 10877-10883
30. DAuria, S.; Varriale, A.; Gonnelli, M.; Saviano, M.; Staiano, M.; Rossi, M.; Strambini, G. B. J. Proteome Res. 2007, 6, 1306-1312
31. Saha Sardar, P.; Maity, S. S.; Ghosh, S.; Chatterjee, J.; Maiti, T. K.; Dasgupta, S. J. Phys. Chem. B 2006, 110, 21349-21356
32. Kerwin, B. A.; Aoki, K. H.; Gonelli, M.; Strambini, G. B. Photochem. Photobiol. 2008, 84, 1172-1181
33. DAuria, S.; Staiano, M.; Varriale, A.; Gonnelli, M.; Marabotti, A.; Rossi, M.; Strambini, G. B. J. Proteome Res. 2008, 7, 1151-1158
34. DAuria, S.; Aurilia, V.; Marabotti, A.; Gonnelli, M.; Strambini, G. B. J. Phys. Chem. B 2009, 113, 13171-13178
35. Galley, W.C. In Concepts of Biochemical Fluorescence; Chen, R. F.; Edelhoch, H., Eds.; Marcel Dekker: New York, 1976; Vol. 2, Chapter 8, pp 409-439.
36. Goulding, C. W.; Parseghian, A.; Sawaya, M. R.; Cascio, D.; Apostol, M. I.; Gennaro, M. L.; Eisenberg, D. Protein Sci. 2002, 11, 2887-2893
37. Manca, C.; Lyashchenko, K.; Wiker, H. G.; Usai, D.; Colangeli, R.; Gennaro, M. L. Infect. Immun. 1997, 65, 16-23
38. Callis, P. R. Methods Enzymol. 1997, 278, 113-150
39. Demas, J. N.; Crosby, G. A J. Phys. Chem. 1971, 75, 991-1024
40. FELIX 32, Operation Manual, Version 1.1; Photon Technology International, Inc.: Lawrenceville, NJ, 2003.
41. DeLano, W. L. The PyMOL Molecular Graphics System; DeLano Scientific: San Carlos, CA, 2004; http://www.pymol.sourceforge.net.
42. Hubbard, S. J.; Thornton, J. M. NACCESS Computer Program, Department of Biochemistry and Molecular Biology; University College: London, 1993.
43. Rucker, A. L.; Pager, C. T.; Campbell, M. N.; Qualls, J. E.; Creamer, T. P. Proteins 2003, 53, 68-75
44. Vuilleumier, S.; Sancxho, J.; Loewenthal, R.; Fersht, A. R. Biochemistry 1993, 32, 10303-10313
45. Förster, T. Zwischenmolekulare energiewanderung und fluoreszenz Ann. Phys. (Leipzig) 1948, 2, 55-75
46. Förster, T. Discuss.Faraday Soc. 1959, 27, 7-17
47. Desie, G.; Boens, N.; De Schryver, F. C. Biochemistry 1986, 25, 8301-8308
48. Saha Sardar, P.; Maity, S. S.; Das, L.; Ghosh, S. Biochemistry 2007, 46, 14544-14556
49. Yamamoto, Y.; Tanaka, J. Bull. Chem. Soc. Jpn. 1972, 45, 1362-1366
50. Harvey, B. J.; Bell, E.; Brancaleon, L. J. Phys. Chem. B 2007, 111, 2610-2620
51. Vivian, J. T.; Callis, P. R. Biophys. J. 2001, 80, 2093-2109
52. Samanta, U.; Pal, D.; Chakrabarti, P. Proteins 2000, 38, 288-300
53. Nanda, V.; Brand, L. Proteins 2000, 40, 112-125
54. Koenig, S.; Muller, L.; Smith, D. K. Chem.-Eur. J. 2001, 7, 979-986
55. Ghosh, S.; Zang, L. H.; Maki, A. H. Biochemistry 1988, 27, 7816-7820
56. Ropson, I. J.; Frieden, C. Proc. Natl. Acad. Sci, U.S.A. 1992, 89, 7222-7226
57. Shu, Q.; Frieden, C. Biochemistry 2004, 43, 1432-1439
58. Bann, J. G.; Pinkner, J.; Hultgren, S. J.; Frieden, C. Proc. Natl. Acad. Sci, U.S.A. 2002, 99, 709-714