-
1
-
-
79953245314
-
Amyloid structure: conformational diversity and consequences
-
Toyama BH, Weissman JS, (2011) Amyloid structure: conformational diversity and consequences. Annu Rev Biochem 80: 557-585.
-
(2011)
Annu Rev Biochem
, vol.80
, pp. 557-585
-
-
Toyama, B.H.1
Weissman, J.S.2
-
2
-
-
0026672305
-
NMR determination of residual structure in a urea-denatured protein, the 434-repressor
-
Neri D, Billeter M, Wider G, Wuthrich K, (1992) NMR determination of residual structure in a urea-denatured protein, the 434-repressor. Science 257: 1559-1563.
-
(1992)
Science
, vol.257
, pp. 1559-1563
-
-
Neri, D.1
Billeter, M.2
Wider, G.3
Wuthrich, K.4
-
3
-
-
0031472252
-
Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway
-
Bond CJ, Wong KB, Clarke J, Fersht AR, Daggett V, (1997) Characterization of residual structure in the thermally denatured state of barnase by simulation and experiment: description of the folding pathway. Proc Natl Acad Sci USA 94: 13409-13413.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 13409-13413
-
-
Bond, C.J.1
Wong, K.B.2
Clarke, J.3
Fersht, A.R.4
Daggett, V.5
-
4
-
-
79952144525
-
High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins
-
McCoy J, Hubbell WL, (2011) High-pressure EPR reveals conformational equilibria and volumetric properties of spin-labeled proteins. Proc Natl Acad Sci USA 108: 1331-1336.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 1331-1336
-
-
McCoy, J.1
Hubbell, W.L.2
-
5
-
-
0029905422
-
Motion of spin-labeled side chains in T4 lysozyme: correlation with protein structure and dynamics
-
Mchaourab HS, Lietzow MA, Hideg K, Hubbell WL, (1996) Motion of spin-labeled side chains in T4 lysozyme: correlation with protein structure and dynamics. Biochemistry 35: 7692-7704.
-
(1996)
Biochemistry
, vol.35
, pp. 7692-7704
-
-
Mchaourab, H.S.1
Lietzow, M.A.2
Hideg, K.3
Hubbell, W.L.4
-
6
-
-
0034063443
-
Variable velocity liquid flow EPR applied to submillisecond protein folding
-
Grigoryants VM, Veselov AV, Scholes CP, (2000) Variable velocity liquid flow EPR applied to submillisecond protein folding. Biophys J 78: 2702-2708.
-
(2000)
Biophys J
, vol.78
, pp. 2702-2708
-
-
Grigoryants, V.M.1
Veselov, A.V.2
Scholes, C.P.3
-
7
-
-
58149279796
-
Mapping alpha-helical induced folding within the intrinsically disordered C-terminal domain of the measles virus nucleoprotein by site-directed spin-labeling EPR spectroscopy
-
Belle V, Rouger S, Costanzo S, Liquiere E, Strancar J, et al. (2008) Mapping alpha-helical induced folding within the intrinsically disordered C-terminal domain of the measles virus nucleoprotein by site-directed spin-labeling EPR spectroscopy. Proteins 73: 973-988.
-
(2008)
Proteins
, vol.73
, pp. 973-988
-
-
Belle, V.1
Rouger, S.2
Costanzo, S.3
Liquiere, E.4
Strancar, J.5
-
8
-
-
84858612961
-
Solid-support EPR studies of Aβ40 monomers reveal a structured state with three ordered segments
-
Gu L, Ngo S, Guo Z, (2012) Solid-support EPR studies of Aβ40 monomers reveal a structured state with three ordered segments. J Biol Chem 287: 9081-9089.
-
(2012)
J Biol Chem
, vol.287
, pp. 9081-9089
-
-
Gu, L.1
Ngo, S.2
Guo, Z.3
-
9
-
-
0028859540
-
Prion-inducing domain of yeast Ure2p and protease resistance of Ure2p prion-containing cells
-
Masison DC, Wickner RB, (1995) Prion-inducing domain of yeast Ure2p and protease resistance of Ure2p prion-containing cells. Science 270: 93-95.
-
(1995)
Science
, vol.270
, pp. 93-95
-
-
Masison, D.C.1
Wickner, R.B.2
-
10
-
-
0041968890
-
Conservation of the prion properties of Ure2p through evolution
-
Baudin-Baillieu A, Fernandez-Bellot E, Reine F, Coissac E, Cullin C, (2003) Conservation of the prion properties of Ure2p through evolution. Mol Biol Cell 14: 3449-3458.
-
(2003)
Mol Biol Cell
, vol.14
, pp. 3449-3458
-
-
Baudin-Baillieu, A.1
Fernandez-Bellot, E.2
Reine, F.3
Coissac, E.4
Cullin, C.5
-
11
-
-
0035852745
-
The crystal structure of the nitrogen regulation fragment of the yeast prion protein Ure2p
-
Umland TC, Taylor KL, Rhee S, Wickner RB, Davies DR, (2001) The crystal structure of the nitrogen regulation fragment of the yeast prion protein Ure2p. Proc Natl Acad Sci USA 98: 1459-1464.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 1459-1464
-
-
Umland, T.C.1
Taylor, K.L.2
Rhee, S.3
Wickner, R.B.4
Davies, D.R.5
-
12
-
-
0035156642
-
Structure of the globular region of the prion protein Ure2 from the yeast Saccharomyces cerevisiae
-
Bousset L, Belrhali H, Janin J, Melki R, Morera S, (2001) Structure of the globular region of the prion protein Ure2 from the yeast Saccharomyces cerevisiae. Structure 9: 39-46.
-
(2001)
Structure
, vol.9
, pp. 39-46
-
-
Bousset, L.1
Belrhali, H.2
Janin, J.3
Melki, R.4
Morera, S.5
-
13
-
-
79955879084
-
The core of Ure2p prion fibrils is formed by the N-terminal segment in a parallel cross-beta structure: evidence from solid-state NMR
-
Kryndushkin DS, Wickner RB, Tycko R, (2011) The core of Ure2p prion fibrils is formed by the N-terminal segment in a parallel cross-beta structure: evidence from solid-state NMR. J Mol Biol 409: 263-277.
-
(2011)
J Mol Biol
, vol.409
, pp. 263-277
-
-
Kryndushkin, D.S.1
Wickner, R.B.2
Tycko, R.3
-
14
-
-
0242353209
-
Architecture of Ure2p prion filaments - The N-terminal domains form a central core fiber
-
Baxa U, Taylor KL, Wall JS, Simon MN, Cheng NQ, et al. (2003) Architecture of Ure2p prion filaments- The N-terminal domains form a central core fiber. J Biol Chem 278: 43717-43727.
-
(2003)
J Biol Chem
, vol.278
, pp. 43717-43727
-
-
Baxa, U.1
Taylor, K.L.2
Wall, J.S.3
Simon, M.N.4
Cheng, N.Q.5
-
15
-
-
36048969163
-
Characterization of β-sheet structure in Ure2p1-89 yeast prion fibrils by solid-state nuclear magnetic resonance
-
Baxa U, Wickner RB, Steven AC, Anderson DE, Marekov LN, et al. (2007) Characterization of β-sheet structure in Ure2p1-89 yeast prion fibrils by solid-state nuclear magnetic resonance. Biochemistry 46: 13149-13162.
-
(2007)
Biochemistry
, vol.46
, pp. 13149-13162
-
-
Baxa, U.1
Wickner, R.B.2
Steven, A.C.3
Anderson, D.E.4
Marekov, L.N.5
-
16
-
-
0033532192
-
Structural characterization of Saccharomyces cerevisiae prion-like protein Ure2
-
Thual C, Komar AA, Bousset L, Fernandez-Bellot E, Cullin C, et al. (1999) Structural characterization of Saccharomyces cerevisiae prion-like protein Ure2. J Biol Chem 274: 13666-13674.
-
(1999)
J Biol Chem
, vol.274
, pp. 13666-13674
-
-
Thual, C.1
Komar, A.A.2
Bousset, L.3
Fernandez-Bellot, E.4
Cullin, C.5
-
17
-
-
0035852824
-
Stability, folding, dimerization, and assembly properties of the yeast prion Ure2p
-
Thual C, Bousset L, Komar AA, Walter S, Buchner J, et al. (2001) Stability, folding, dimerization, and assembly properties of the yeast prion Ure2p. Biochemistry 40: 1764-1773.
-
(2001)
Biochemistry
, vol.40
, pp. 1764-1773
-
-
Thual, C.1
Bousset, L.2
Komar, A.A.3
Walter, S.4
Buchner, J.5
-
18
-
-
11844257556
-
Is the prion domain of soluble Ure2p unstructured?
-
Pierce MM, Baxa U, Steven AC, Bax A, Wickner RB, (2005) Is the prion domain of soluble Ure2p unstructured? Biochemistry 44: 321-328.
-
(2005)
Biochemistry
, vol.44
, pp. 321-328
-
-
Pierce, M.M.1
Baxa, U.2
Steven, A.C.3
Bax, A.4
Wickner, R.B.5
-
20
-
-
79959882243
-
Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins
-
Halfmann R, Alberti S, Krishnan R, Lyle N, O'Donnell CW, et al. (2011) Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins. Mol Cell 43: 72-84.
-
(2011)
Mol Cell
, vol.43
, pp. 72-84
-
-
Halfmann, R.1
Alberti, S.2
Krishnan, R.3
Lyle, N.4
O'Donnell, C.W.5
-
21
-
-
33847324863
-
A natively unfolded yeast prion monomer adopts an ensemble of collapsed and rapidly fluctuating structures
-
Mukhopadhyay S, Krishnan R, Lemke EA, Lindquist S, Deniz AA, (2007) A natively unfolded yeast prion monomer adopts an ensemble of collapsed and rapidly fluctuating structures. Proc Natl Acad Sci USA 104: 2649-2654.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 2649-2654
-
-
Mukhopadhyay, S.1
Krishnan, R.2
Lemke, E.A.3
Lindquist, S.4
Deniz, A.A.5
-
22
-
-
4344716256
-
Random-coil behavior and the dimensions of chemically unfolded proteins
-
Kohn JE, Millett IS, Jacob J, Zagrovic B, Dillon TM, et al. (2004) Random-coil behavior and the dimensions of chemically unfolded proteins. Proc Natl Acad Sci USA 101: 12491-12496.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12491-12496
-
-
Kohn, J.E.1
Millett, I.S.2
Jacob, J.3
Zagrovic, B.4
Dillon, T.M.5
-
23
-
-
63049091236
-
A systematic survey identifies prions and illuminates sequence features of prionogenic proteins
-
Alberti S, Halfmann R, King O, Kapila A, Lindquist S, (2009) A systematic survey identifies prions and illuminates sequence features of prionogenic proteins. Cell 137: 146-158.
-
(2009)
Cell
, vol.137
, pp. 146-158
-
-
Alberti, S.1
Halfmann, R.2
King, O.3
Kapila, A.4
Lindquist, S.5
-
24
-
-
80051934831
-
Hierarchical organization in the amyloid core of yeast prion protein Ure2
-
Ngo S, Gu L, Guo Z, (2011) Hierarchical organization in the amyloid core of yeast prion protein Ure2. J Biol Chem 286: 29691-29699.
-
(2011)
J Biol Chem
, vol.286
, pp. 29691-29699
-
-
Ngo, S.1
Gu, L.2
Guo, Z.3
-
25
-
-
0024448151
-
Calculation of Protein Extinction Coefficients from Amino-Acid Sequence Data
-
Gill SC, von Hippel PH, (1989) Calculation of Protein Extinction Coefficients from Amino-Acid Sequence Data. Anal Biochem 182: 319-326.
-
(1989)
Anal Biochem
, vol.182
, pp. 319-326
-
-
Gill, S.C.1
von Hippel, P.H.2
-
26
-
-
0024564552
-
Control of enzyme activity by an engineered disulfide bond
-
Matsumura M, Matthews BW, (1989) Control of enzyme activity by an engineered disulfide bond. Science 243: 792-794.
-
(1989)
Science
, vol.243
, pp. 792-794
-
-
Matsumura, M.1
Matthews, B.W.2
-
27
-
-
34249794011
-
Structural determinants of nitroxide motion in spin-labeled proteins: Tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme
-
Guo Z, Cascio D, Hideg K, Kálai T, Hubbell WL, (2007) Structural determinants of nitroxide motion in spin-labeled proteins: Tertiary contact and solvent-inaccessible sites in helix G of T4 lysozyme. Protein Sci 16: 1069-1086.
-
(2007)
Protein Sci
, vol.16
, pp. 1069-1086
-
-
Guo, Z.1
Cascio, D.2
Hideg, K.3
Kálai, T.4
Hubbell, W.L.5
-
28
-
-
0001867405
-
Calculating slow motional magnetic resonance specta
-
Berliner LJ, Reuben J, editors. New York: Plenum Press
-
Schneider DJ, Freed JH (1989) Calculating slow motional magnetic resonance specta. In: Berliner LJ, Reuben J, editors. Spin Labeling: Theory and Applications. New York: Plenum Press. 1-76.
-
(1989)
Spin Labeling: Theory and Applications
, pp. 1-76
-
-
Schneider, D.J.1
Freed, J.H.2
-
29
-
-
0000326938
-
Nonlinear-least-squares analysis of slow-motion EPR spectra in one and two dimensions using a modified Levenberg-Marquardt algorithm
-
Budil DE, Lee S, Saxena S, Freed JH, (1996) Nonlinear-least-squares analysis of slow-motion EPR spectra in one and two dimensions using a modified Levenberg-Marquardt algorithm. J Magn Reson Ser A 120: 155-189.
-
(1996)
J Magn Reson Ser A
, vol.120
, pp. 155-189
-
-
Budil, D.E.1
Lee, S.2
Saxena, S.3
Freed, J.H.4
-
30
-
-
0035799354
-
Molecular motion of spin labeled side chains in alpha-helices: analysis by variation of side chain structure
-
Columbus L, Kalai T, Jeko J, Hideg K, Hubbell WL, (2001) Molecular motion of spin labeled side chains in alpha-helices: analysis by variation of side chain structure. Biochemistry 40: 3828-3846.
-
(2001)
Biochemistry
, vol.40
, pp. 3828-3846
-
-
Columbus, L.1
Kalai, T.2
Jeko, J.3
Hideg, K.4
Hubbell, W.L.5
-
31
-
-
0035799354
-
Molecular motion of spin labeled side chains in α-helices: analysis by variation of side chain structure
-
Columbus L, Kálai T, Jeko J, Hideg K, Hubbell WL, (2001) Molecular motion of spin labeled side chains in α-helices: analysis by variation of side chain structure. Biochemistry 40: 3828-3846.
-
(2001)
Biochemistry
, vol.40
, pp. 3828-3846
-
-
Columbus, L.1
Kálai, T.2
Jeko, J.3
Hideg, K.4
Hubbell, W.L.5
-
34
-
-
0014010861
-
Viscosity and density of aqueous solutions of urea and guanidine hydrochloride
-
Kawahara K, Tanford C, (1966) Viscosity and density of aqueous solutions of urea and guanidine hydrochloride. J Biol Chem 241: 3228-3232.
-
(1966)
J Biol Chem
, vol.241
, pp. 3228-3232
-
-
Kawahara, K.1
Tanford, C.2
-
35
-
-
0037474077
-
Oriented versus random protein immobilization
-
Wilchek M, Miron T, (2003) Oriented versus random protein immobilization. J Biochem Biophys Methods 55: 67-70.
-
(2003)
J Biochem Biophys Methods
, vol.55
, pp. 67-70
-
-
Wilchek, M.1
Miron, T.2
-
36
-
-
67749124074
-
Osmolyte perturbation reveals conformational equilibria in spin-labeled proteins
-
Lopez CJ, Fleissner MR, Guo Z, Kusnetzow AK, Hubbell WL, (2009) Osmolyte perturbation reveals conformational equilibria in spin-labeled proteins. Protein Sci 18: 1637-1652.
-
(2009)
Protein Sci
, vol.18
, pp. 1637-1652
-
-
Lopez, C.J.1
Fleissner, M.R.2
Guo, Z.3
Kusnetzow, A.K.4
Hubbell, W.L.5
-
37
-
-
44349192171
-
Prediction of disordered regions in proteins based on the meta approach
-
Ishida T, Kinoshita K, (2008) Prediction of disordered regions in proteins based on the meta approach. Bioinformatics 24: 1344-1348.
-
(2008)
Bioinformatics
, vol.24
, pp. 1344-1348
-
-
Ishida, T.1
Kinoshita, K.2
-
38
-
-
0037058949
-
Conservation of a portion of the S. cerevisiae Ure2p prion domain that interacts with the full-length protein
-
Edskes HK, Wickner RB, (2002) Conservation of a portion of the S. cerevisiae Ure2p prion domain that interacts with the full-length protein. Proc Natl Acad Sci USA 99Suppl 4: 16384-16391.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 16384-16391
-
-
Edskes, H.K.1
Wickner, R.B.2
-
39
-
-
0942298128
-
Amyloid nucleation and hierarchical assembly of Ure2p fibrils. Role of asparagine/glutamine repeat and nonrepeat regions of the prion domains
-
Jiang Y, Li H, Zhu L, Zhou JM, Perrett S, (2004) Amyloid nucleation and hierarchical assembly of Ure2p fibrils. Role of asparagine/glutamine repeat and nonrepeat regions of the prion domains. J Biol Chem 279: 3361-3369.
-
(2004)
J Biol Chem
, vol.279
, pp. 3361-3369
-
-
Jiang, Y.1
Li, H.2
Zhu, L.3
Zhou, J.M.4
Perrett, S.5
-
40
-
-
66449136918
-
Disulfide bond formation significantly accelerates the assembly of Ure2p fibrils because of the proximity of a potential amyloid stretch
-
Fei L, Perrett S, (2009) Disulfide bond formation significantly accelerates the assembly of Ure2p fibrils because of the proximity of a potential amyloid stretch. J Biol Chem 284: 11134-11141.
-
(2009)
J Biol Chem
, vol.284
, pp. 11134-11141
-
-
Fei, L.1
Perrett, S.2
-
41
-
-
85046915607
-
New insights into the molecular mechanism of amyloid formation from cysteine scanning
-
Fei L, Perrett S, (2010) New insights into the molecular mechanism of amyloid formation from cysteine scanning. Prion 4: 9-12.
-
(2010)
Prion
, vol.4
, pp. 9-12
-
-
Fei, L.1
Perrett, S.2
-
42
-
-
3543022080
-
Scrambled prion domains form prions and amyloid
-
Ross ED, Baxa U, Wickner RB, (2004) Scrambled prion domains form prions and amyloid. Mol Cell Biol 24: 7206-7213.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 7206-7213
-
-
Ross, E.D.1
Baxa, U.2
Wickner, R.B.3
-
43
-
-
24644444562
-
Primary sequence independence for prion formation
-
Ross ED, Edskes HK, Terry MJ, Wickner RB, (2005) Primary sequence independence for prion formation. Proc Natl Acad Sci USA 102: 12825-12830.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12825-12830
-
-
Ross, E.D.1
Edskes, H.K.2
Terry, M.J.3
Wickner, R.B.4
-
44
-
-
65849165676
-
Competition between intramolecular and intermolecular interactions in an amyloid-forming protein
-
Routledge KE, Tartaglia GG, Platt GW, Vendruscolo M, Radford SE, (2009) Competition between intramolecular and intermolecular interactions in an amyloid-forming protein. J Mol Biol 389: 776-786.
-
(2009)
J Mol Biol
, vol.389
, pp. 776-786
-
-
Routledge, K.E.1
Tartaglia, G.G.2
Platt, G.W.3
Vendruscolo, M.4
Radford, S.E.5
|