Formation and domain partitioning of h-ras peptide nanoclusters: Effects of peptide concentration and lipid composition

Journal of the American Chemical Society

Volumn 134, Issue 41, 2012, Pages 17278-17285

  Li, Zhenlong ^a   Janosi, Lorant ^a   Gorfe, Alemayehu A ^a  

^a UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BILAYER COMPOSITIONS; BILAYER SYSTEMS; COARSE-GRAINED MOLECULAR DYNAMICS SIMULATIONS; CRITICAL CONCENTRATION; DISORDERED DOMAINS; DOMAIN PARTITIONING; HEPTAPEPTIDES; KEY ELEMENTS; LATERAL DISTRIBUTIONS; LIPID COMPOSITION; LIPID MODIFICATIONS; MEMBRANE BINDING; MOLECULAR BASIS; NONOVERLAPPING; SIMULATION APPROACH;

CELL MEMBRANES; LIPID BILAYERS; MOLECULAR DYNAMICS; NANOCLUSTERS;

PEPTIDES;

CHOLESTEROL; HEPTAPEPTIDE; LIPID; RAS PROTEIN;

ARTICLE; BIOMASS PARTITIONING; CELL MEMBRANE; CONCENTRATION (PARAMETERS); LIPID ANALYSIS; LIPID BILAYER; LIPID COMPOSITION; MEMBRANE BINDING; MOLECULAR DYNAMICS; SIGNAL TRANSDUCTION; SIMULATION; THERMODYNAMICS;

LIPIDS; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; NANOSTRUCTURES; PEPTIDE FRAGMENTS; RAS PROTEINS; THERMODYNAMICS;

EID: 84867555260     PISSN: 00027863     EISSN: 15205126     Source Type: Journal    
DOI: 10.1021/ja307716z     Document Type: Article

References (53)

1. Karnoub, A. E.; Weinberg, R. A. Nat. Rev. Mol. Cell Biol. 2008, 9, 517
2. Abankwa, D.; Gorfe, A. A.; Hancock, J. F. Semin. Cell Dev. Biol. 2007, 18, 599
3. Rotblat, B.; Prior, I. A.; Muncke, C.; Parton, R. G.; Kloog, Y.; Henis, Y. I.; Hancock, J. F. Mol. Cell. Biol. 2004, 24, 6799
4. Abankwa, D.; Gorfe, A. A.; Inder, K.; Hancock, J. F. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 1130
5. Wang, T. Y.; Leventis, R.; Silvius, J. R. Biochemistry 2001, 30, 13031
6. Brunsveld, L.; Waldmann, H.; Huster, D. Biochim. Biophys. Acta 2009, 1788, 273
7. Gorfe, A. A. Curr. Med. Chem. 2010, 17, 1
8. Vogel, A.; Reuther, G.; Roark, M. B.; Tan, K. T.; Waldmann, H.; Feller, S. E.; Huster, D. Biochim. Biophys. Acta 2010, 1798, 275
9. Vogel, A.; Tan, K. T.; Waldmann, H.; Feller, S. E.; Brown, M. F.; Huster, D. Biophys. J. 2007, 93, 2697
10. Gorfe, A. A.; Pellarin, R.; Caflisch, A. J. Am. Chem. Soc. 2004, 126, 15277
11. Gorfe, A. A.; Babakhani, A.; McCammon, J. A. Angew. Chem., Int. Ed. Engl. 2007, 46, 8234
12. Gorfe, A. A.; Babakhani, A.; McCammon, J. A. J. Am. Chem. Soc. 2007, 129, 12280
13. Gorfe, A. A.; Hanzal-Bayer, M.; Abankwa, D.; Hancock, J. F.; McCammon, J. A. J. Med. Chem. 2007, 50, 674
14. Jensen, M. O.; Mouritsen, O. G.; Peters, G. H. Biophys. J. 2004, 86, 3556
15. Gorfe, A. A.; McCammon, J. A. J. Am. Chem. Soc. 2008, 130, 12624
16. Abankwa, D.; Gorfe, A. A.; Hancock, J. F. Cell Cycle 2008, 7, 2667
17. Gorfe, A. A.; Baron, R.; McCammon, J. A. Biophys. J. 2008, 95, 3269
18. Plowman, S. J.; Muncke, C.; Parton, R. G.; Hancock, J. F. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 15500
19. Hancock, J. F. Nat. Rev. Mol. Cell Biol. 2006, 7, 456
20. Prior, I. A.; Muncke, C.; Parton, R. G.; Hancock, J. F. J. Cell Biol. 2003, 160, 165
21. Weise, K.; Triola, G.; Janosch, S.; Waldmann, H.; Winter, R. Biochim. Biophys. Acta 2010, 1798, 1409
22. Weise, K.; Kapoor, S.; Denter, C.; Nikolaus, J.; Opitz, N.; Koch, S.; Triola, G.; Herrmann, A.; Waldmann, H.; Winter, R. J. Am. Chem. Soc. 2011, 133, 880
23. Huster, D.; Vogel, A.; Katzka, C.; Scheidt, H. A.; Binder, H.; Dante, S.; Gutberlet, T.; Zschörnig, O.; Waldmann, H.; Arnold, K. J. Am. Chem. Soc. 2003, 125, 4070
24. Vogel, A.; Reuther, G.; Weise, K.; Triola, G.; Nikolaus, J.; Tan, K. T.; Nowak, C.; Herrmann, A.; Waldmann, H.; Winter, R. Angew. Chem., Int. Ed. Engl. 2009, 48, 8784
25. Abankwa, D.; Hanzal-Bayer, M.; Ariotti, N.; Plowman, S. J.; Gorfe, A. A.; Parton, R. G.; McCammon, J. A.; Hancock, J. F. EMBO J. 2008, 27, 727
26. Nicolini, C.; Baranski, J.; Schlummer, S.; Palomo, J.; Lumbierres-Burgues, M.; Kahms, M.; Kuhlmann, J.; Sanchez, S.; Gratton, E.; Waldmann, H.; Winter, R. J. Am. Chem. Soc. 2006, 128, 192
27. Elliott, R.; Szleifer, I.; Schick, M. Phys. Rev. Lett. 2006, 96, 98101
28. Garbès Putzel, G.; Schick, M. Biophys. J. 2008, 95, 4756
29. Uline, M. J.; Longo, G. S.; Schick, M.; Szleifer, I. Biophys. J. 2010, 98, 1883
30. Schäfer, L. V.; Marrink, S. J. Biophys. J. 2010, 99, L91
31. Schäfer, L. V.; de Jong, D. H.; Holt, A.; Rzepiela, A. J.; de Vries, A. H.; Poolman, B.; Killian, J. A.; Marrink, S. J. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 1343
32. de Jong, D. H.; Lopez, C.; Marrink, S. J. Farad. Discuss. 2012, in press.
33. Brewster, R.; Pincus, P.; Safran, S. Biophys. J. 2009, 97, 1087
34. Brewster, R.; Safran, S. A. Biophys. J. 2010, 98, L21
35. Yamamoto, T.; Brewster, R.; Safran, S. Europhys. Lett. 2010, 91, 28002
36. Yamamoto, T.; Safran, S. A. Soft Matter 2011, 7, 7021
37. Janosi, L.; Li, Z.; Hancock, J. F.; Gorfe, A. A. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 8097
38. Parton, D. L.; Klingelhoefer, J. W.; Sansom, M. S. P. Biophys. J. 2011, 101, 691
39. Periole, X.; Huber, T.; Marrink, S. J.; Sakmar, T. P. J. Am. Chem. Soc. 2007, 129, 10126
40. Prakash, A.; Janosi, L.; Doxastakis, M. Biophys. J. 2010, 99, 3657
41. Janosi, L.; Prakash, A.; Doxastakis, M. Biophys. J. 2010, 99, 284
42. Domanski, J.; Marrink, S. J.; Schafer, L. V. Biochim. Biophys. Acta 2012, 1818, 984
43. Hess, B.; Kutzner, C.; van der Spoel, D.; Lindahl, E. J. Chem. Theory Comput. 2008, 4, 435
44. Marrink, S. J.; Risselada, H. J.; Yefimov, S.; Tieleman, D. P.; de Vries, A. H. J. Phys. Chem. B 2007, 111, 7812
45. Monticelli, L.; Kandasamy, S. K.; Periole, X.; Larson, R. G.; Tieleman, D. P.; Marrink, S. J. J. Chem. Theory Comput. 2008, 4, 819
46. Humphrey, W.; Dalke, A.; Schulten, K. J. Mol. Graphics 1996, 14, 33
47. Li, Z.; Dormidontova, E. E. Soft Matter 2011, 7, 4179
48. Davis, J. H.; Clair, J. J.; Juhasz, J. Biophys. J. 2009, 96, 521
49. Rosen, M. J. Surfactants and Interfacial Phenomena, fourth edition, John Wiley & Son Inc: Hoboken, NJ, 2012.
50. Mitchell, D. C.; Litman, B. J. Biophys. J. 1998, 75, 896
51. Hofsä, C.; Lindahl, E.; Edholm, O. Biophys. J. 2003, 84, 2192
52. Li, Z.; Gorfe, A. A. Small GTPases 2012, 3, 1
53. Levental, I.; Lingwood, D.; Grzybek, M.; Coskun, Ü.; Simons, K. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 22050