메뉴 건너뛰기




Volumn 40, Issue 18, 2012, Pages 9272-9285

Deep sequencing of RNA from immune cell-derived vesicles uncovers the selective incorporation of small non-coding RNA biotypes with potential regulatory functions

Author keywords

[No Author keywords available]

Indexed keywords

CELL RNA; MESSENGER RNA; MICRORNA; RIBOSOME RNA; RNA; SHUTTLE RNA; SIGNAL RECOGNITION PARTICLE; TRANSFER RNA; UNCLASSIFIED DRUG; UNTRANSLATED RNA;

EID: 84867546396     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks658     Document Type: Article
Times cited : (576)

References (64)
  • 1
    • 68849129712 scopus 로고    scopus 로고
    • Membrane vesicles as conveyors of immune responses
    • Thery, C., Ostrowski, M. and Segura, E. (2009) Membrane vesicles as conveyors of immune responses. Nat. Rev. Immunol., 9, 581-593.
    • (2009) Nat. Rev. Immunol. , vol.9 , pp. 581-593
    • Thery, C.1    Ostrowski, M.2    Segura, E.3
  • 2
    • 78650265541 scopus 로고    scopus 로고
    • Exosomes and other microvesicles in infection biology: Organelles with unanticipated phenotypes
    • Silverman, J. M. and Reiner, N. E. (2011) Exosomes and other microvesicles in infection biology: organelles with unanticipated phenotypes. Cell Microbiol., 13, 1-9.
    • (2011) Cell Microbiol. , vol.13 , pp. 1-9
    • Silverman, J.M.1    Reiner, N.E.2
  • 3
    • 85027948065 scopus 로고    scopus 로고
    • Ectosomes as immunomodulators. Semin
    • Sadallah, S.,-eken, C. and Schifferli, J. A. (2010) Ectosomes as immunomodulators. Semin. Immunopathol, 33, 487-495.
    • (2010) Immunopathol , vol.33 , pp. 487-495
    • Sadallah, S.1    Eken, C.2    Schifferli, J.A.3
  • 5
    • 81055157988 scopus 로고    scopus 로고
    • Exosome secretion: Molecular mechanisms and roles in immune responses
    • Bobrie, A., Colombo, M., Raposo, G. and Thery, C. (2011) Exosome secretion: molecular mechanisms and roles in immune responses. Traffic, 12, 1659-1668.
    • (2011) Traffic , vol.12 , pp. 1659-1668
    • Bobrie, A.1    Colombo, M.2    Raposo, G.3    Thery, C.4
  • 6
    • 25144456544 scopus 로고    scopus 로고
    • Membrane vesicles traffic signals and facilitate group activities in a prokaryote
    • DOI 10.1038/nature03925, PII N03925
    • Mashburn, L. M. and Whiteley, M. (2005) Membrane vesicles traffic signals and facilitate group activities in a prokaryote. Nature, 437, 422-425. (Pubitemid 41613505)
    • (2005) Nature , vol.437 , Issue.7057 , pp. 422-425
    • Mashburn, L.M.1    Whiteley, M.2
  • 7
    • 0036237642 scopus 로고    scopus 로고
    • The biogenesis and functions of exosomes
    • DOI 10.1034/j.1600-0854.2002.30502.x
    • Stoorvogel, W., Kleijmeer, M. J., Geuze, H. J. and Raposo, G. (2002) The biogenesis and functions of exosomes. Traffic, 3, 321-330. (Pubitemid 34461042)
    • (2002) Traffic , vol.3 , Issue.5 , pp. 321-330
    • Stoorvogel, W.1    Kleijmeer, M.J.2    Geuze, H.J.3    Raposo, G.4
  • 10
    • 34548655590 scopus 로고    scopus 로고
    • Cd8+dendritic cells use lfa-1 to capture mhC-peptide complexes from exosomes in vivo
    • Segura, E., Guerin, C., Hogg, N., Amigorena, S. and Thery, C. (2007) CD8+dendritic cells use LFA-1 to capture MHC-peptide complexes from exosomes in vivo. J. Immunol., 179, 1489-1496.
    • (2007) J. Immunol. , vol.179 , pp. 1489-1496
    • Segura, E.1    Guerin, C.2    Hogg, N.3    Amigorena, S.4    Thery, C.5
  • 11
    • 61849179182 scopus 로고    scopus 로고
    • Activated T cells recruit exosomes secreted by dendritic cells via LFA-1
    • Nolte-'t Hoen, E. N., Buschow, S. I., Anderton, S. M., Stoorvogel, W. and Wauben, M. H. (2009) Activated T cells recruit exosomes secreted by dendritic cells via LFA-1. Blood, 113, 1977-1981.
    • (2009) Blood , vol.113 , pp. 1977-1981
    • Nolte-'t Hoen, E.N.1    Buschow, S.I.2    Anderton, S.M.3    Stoorvogel, W.4    Wauben, M.H.5
  • 12
    • 0020804037 scopus 로고
    • Receptor-mediated endocytosis of transferrin and recycling of the transferrin receptor in rat reticulocytes
    • Harding, C., Heuser, J. and Stahl, P. (1983) Receptor-mediated endocytosis of transferrin and recycling of the transferrin receptor in rat reticulocytes. J. Cell Biol., 97, 329-339.
    • (1983) J. Cell Biol. , vol.97 , pp. 329-339
    • Harding, C.1    Heuser, J.2    Stahl, P.3
  • 13
    • 0023645106 scopus 로고
    • Vesicle formation during reticulocyte maturation. Association of plasma membrane activities with released vesicles (exosomes
    • Johnstone, R. M., Adam, M., Hammond, J. R., Orr, L. and Turbide, C. (1987) Vesicle formation during reticulocyte maturation. Association of plasma membrane activities with released vesicles (exosomes). J. Biol. Chem., 262, 9412-9420.
    • (1987) J. Biol. Chem , vol.262 , pp. 9412-9420
    • Johnstone, R.1    Adam, M.2    Hammond, J.3    Orr, L.4    Turbide, C.5
  • 14
    • 79958048581 scopus 로고    scopus 로고
    • Body fluid derived exosomes as a novel template for clinical diagnostics
    • Keller, S., Ridinger, J., Rupp, A. K., Janssen, J. W. and Altevogt, P. (2011) Body fluid derived exosomes as a novel template for clinical diagnostics. J. Transl. Med., 9, 86.
    • (2011) J. Transl. Med. , vol.9 , pp. 86
    • Keller, S.1    Ridinger, J.2    Rupp, A.3    Janssen, J.W.4    Altevogt, P.5
  • 15
    • 18144372419 scopus 로고    scopus 로고
    • Vaccination of metastatic melanoma patients with autologous dendritic cell (dc) derived-exosomes: Results of the first phase i clinical trial
    • Escudier, B., Dorval, T., Chaput, N., Andre, F., Caby, M. P., Novault, S., Flament, C., Leboulaire, C., Borg, C., Amigorena, S. et al. (2005) Vaccination of metastatic melanoma patients with autologous dendritic cell (DC) derived-exosomes: results of the first phase I clinical trial. J. Transl. Med., 3, 10.
    • (2005) J. Transl. Med. , vol.3 , pp. 10
    • Escudier, B.1    Dorval, T.2    Chaput, N.3    Andre, F.4    Caby, M.5    Novault, S.6    Flament, C.7    Leboulaire, C.8    Borg, C.9    Amigorena, S.10
  • 17
    • 34249302620 scopus 로고    scopus 로고
    • Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells
    • DOI 10.1038/ncb1596, PII NCB1596
    • Valadi, H.,-ekstrom, K., Bossios, A., Sjostrand, M., Lee, J. J. and Lotvall, J. O. (2007) Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat. Cell. Biol., 9, 654-659. (Pubitemid 47214727)
    • (2007) Nature Cell Biology , vol.9 , Issue.6 , pp. 654-659
    • Valadi, H.1    Ekstrom, K.2    Bossios, A.3    Sjostrand, M.4    Lee, J.J.5    Lotvall, J.O.6
  • 19
    • 33646146422 scopus 로고    scopus 로고
    • Embryonic stem cell-derived microvesicles reprogram hematopoietic progenitors: Evidence for horizontal transfer of mrna and protein delivery
    • Ratajczak, J., Miekus, K., Kucia, M., Zhang, J., Reca, R., Dvorak, P. and Ratajczak, M. Z. (2006) Embryonic stem cell-derived microvesicles reprogram hematopoietic progenitors: evidence for horizontal transfer of mRNA and protein delivery. Leukemia., 20, 847-856.
    • (2006) Leukemia. , vol.20 , pp. 847-856
    • Ratajczak, J.1    Miekus, K.2    Kucia, M.3    Zhang, J.4    Reca, R.5    Dvorak, P.6    Ratajczak, M.Z.7
  • 20
    • 45449093192 scopus 로고    scopus 로고
    • MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer
    • DOI 10.1016/j.ygyno.2008.04.033, PII S0090825808003430
    • Taylor, D. D. and Gercel-Taylor, C. (2008) MicroRNA signatures of tumor-derived exosomes as diagnostic biomarkers of ovarian cancer. Gynecol. Oncol., 110, 13-21. (Pubitemid 351853251)
    • (2008) Gynecologic Oncology , vol.110 , Issue.1 , pp. 13-21
    • Taylor, D.D.1    Gercel-Taylor, C.2
  • 23
    • 78149409316 scopus 로고    scopus 로고
    • Export of micrornas and microrna-protective protein by mammalian cells
    • Wang, K., Zhang, S., Weber, J., Baxter, D. and Galas, D. J. (2010) Export of microRNAs and microRNA-protective protein by mammalian cells. Nucleic Acids Res., 38, 7248-7259.
    • (2010) Nucleic acids res , vol.38 , pp. 7248-7259
    • Wang, K.1    Zhang, S.2    Weber, J.3    Baxter, D.4    Galas, D.J.5
  • 25
    • 33846945735 scopus 로고    scopus 로고
    • Processing of intronic micrornas
    • Kim, Y. K. and Kim, V. N. (2007) Processing of intronic microRNAs. EMBO J., 26, 775-783.
    • (2007) EMBO J. , vol.26 , pp. 775-783
    • Kim, Y.K.1    Kim, V.N.2
  • 29
    • 61849133411 scopus 로고    scopus 로고
    • Long intronic noncoding rna transcription: Expression noise or expression choice?
    • Louro, R., Smirnova, A. S. and Verjovski-Almeida, S. (2009) Long intronic noncoding RNA transcription: expression noise or expression choice? Genomics, 93, 291-298.
    • (2009) Genomics , vol.93 , pp. 291-298
    • Louro, R.1    Smirnova, A.S.2    Verjovski-Almeida, S.3
  • 30
    • 70449953975 scopus 로고    scopus 로고
    • The complex eukaryotic transcriptome: Unexpected pervasive transcription and novel small rnas
    • Jacquier, A. (2009) The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs. Nat. Rev. Genet., 10, 833-844.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 833-844
    • Jacquier, A.1
  • 32
    • 70349652191 scopus 로고    scopus 로고
    • The non-coding rna of the multidrug resistance-linked vault particle encodes multiple regulatory small rnas
    • Persson, H., Kvist, A., Vallon-Christersson, J., Medstrand, P., Borg, A. and Rovira, C. (2009) The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs. Nat. Cell Biol., 11, 1268-1271.
    • (2009) Nat. Cell Biol. , vol.11 , pp. 1268-1271
    • Persson, H.1    Kvist, A.2    Vallon-Christersson, J.3    Medstrand, P.4    Borg, A.5    Rovira, C.6
  • 33
    • 77950202393 scopus 로고    scopus 로고
    • Human trna-derived small rnas in the global regulation of rna silencing
    • Haussecker, D., Huang, Y., Lau, A., Parameswaran, P., Fire, A. Z. and Kay, M. A. (2010) Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA, 16, 673-695.
    • (2010) RNA , vol.16 , pp. 673-695
    • Haussecker, D.1    Huang, Y.2    Lau, A.3    Parameswaran, P.4    Fire, A.Z.5    Kay, M.A.6
  • 36
    • 78650281342 scopus 로고    scopus 로고
    • New methods for next generation sequencing based microrna expression profiling
    • Buermans, H. P., Ariyurek, Y., van Ommen, G., den Dunnen, J. T. and t Hoen, P. A. (2010) New methods for next generation sequencing based microRNA expression profiling. BMC Genomics, 11, 716.
    • (2010) BMC Genomics , vol.11 , pp. 716
    • Buermans, H.1    Ariyurek, Y.2    Van Ommen, G.3    Den Dunnen, J.T.4    Hoen, T.P.5
  • 40
    • 78651293534 scopus 로고    scopus 로고
    • Mirbase: Integrating microrna annotation and deep-sequencing data
    • Kozomara, A. and Griffiths-Jones, S. (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res., 39, D152-D157.
    • (2011) Nucleic Acids Res. , vol.39
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 42
  • 44
    • 14244257879 scopus 로고    scopus 로고
    • Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli
    • DOI 10.1093/nar/gki256
    • Kawano, M., Reynolds, A. A., Miranda-Rios, J. and Storz, G. (2005) Detection of 5'- and 3'-UTR-derived small RNAs and cis-encoded antisense RNAs in Escherichia coli. Nucleic Acids Res., 33, 1040-1050. (Pubitemid 41430524)
    • (2005) Nucleic Acids Research , vol.33 , Issue.3 , pp. 1040-1050
    • Kawano, M.1    Reynolds, A.A.2    Miranda-Rios, J.3    Storz, G.4
  • 45
    • 72749089855 scopus 로고    scopus 로고
    • A novel class of small rnas: Trna-derived rna fragments (trfs)
    • Lee, Y. S., Shibata, Y., Malhotra, A. and Dutta, A. (2009) A novel class of small RNAs: tRNA-derived RNA fragments (tRFs). Genes Dev., 23, 2639-2649.
    • (2009) Genes Dev. , vol.23 , pp. 2639-2649
    • Lee, Y.1    Shibata, Y.2    Malhotra, A.3    Dutta, A.4
  • 47
    • 56049119367 scopus 로고    scopus 로고
    • Stress-induced trna-derived rnas: A novel class of small rnas in the primitive eukaryote giardia lamblia
    • Li, Y., Luo, J., Zhou, H., Liao, J. Y., Ma, L. M., Chen, Y. Q. and Qu, L. H. (2008) Stress-induced tRNA-derived RNAs: a novel class of small RNAs in the primitive eukaryote Giardia lamblia. Nucleic Acids Res., 36, 6048-6055.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 6048-6055
    • Li, Y.1    Luo, J.2    Zhou, H.3    Liao, J.4    Ma, L.5    Chen Y.Q. Qu, L.H.6
  • 48
    • 0023003549 scopus 로고
    • Isolation and characterization of a novel ribonucleoprotein particle: Large structures contain a single species of small RNA
    • DOI 10.1083/jcb.103.3.699
    • Kedersha, N. L. and Rome, L. H. (1986) Isolation and characterization of a novel ribonucleoprotein particle: large structures contain a single species of small RN A. J. Cell Biol., 103, 699-709. (Pubitemid 17177322)
    • (1986) Journal of Cell Biology , vol.103 , Issue.3 , pp. 699-709
    • Kedersha, N.L.1    Rome, L.H.2
  • 49
    • 65249182649 scopus 로고    scopus 로고
    • The subcellular distribution of an rna quality control protein, the ro autoantigen, is regulated by noncoding y rna binding
    • Sim, S., Weinberg, D. E., Fuchs, G., Choi, K., Chung, J. and Wolin, S. L. (2009) The subcellular distribution of an RNA quality control protein, the Ro autoantigen, is regulated by noncoding Y RNA binding. Mol. Biol. Cell, 20, 1555-1564.
    • (2009) Mol. Biol Cell , vol.20 , pp. 1555-1564
    • Sim, S.1    Weinberg, D.2    Fuchs, G.3    Choi, K.4    Chung, J.5    Wolin, S.L.6
  • 50
    • 36549073601 scopus 로고    scopus 로고
    • The expanding RNA polymerase III transcriptome
    • DOI 10.1016/j.tig.2007.09.001, PII S0168952507003071
    • Dieci, G., Fiorino, G., Castelnuovo, M., Teichmann, M. and Pagano, A. (2007) The expanding RNA polymerase III transcriptome. Trends Genet., 23, 614-622. (Pubitemid 350180140)
    • (2007) Trends in Genetics , vol.23 , Issue.12 , pp. 614-622
    • Dieci, G.1    Fiorino, G.2    Castelnuovo, M.3    Teichmann, M.4    Pagano, A.5
  • 51
    • 70450208430 scopus 로고    scopus 로고
    • Packaging of host my rnas by murine leukemia virus may occur early in y rna biogenesis
    • Garcia, E. L., Onafuwa-Nuga, A., Sim, S., King, S. R., Wolin, S. L. and Telesnitsky, A. (2009) Packaging of host mY RNAs by murine leukemia virus may occur early in Y RNA biogenesis. J. Virol., 83, 12526-12534.
    • (2009) J. Virol. , vol.83 , pp. 12526-12534
    • Garcia, E.1    Onafuwa-Nuga, A.2    Sim, S.3    King, S.4    Wolin, S.L.5    Telesnitsky, A.6
  • 52
    • 27144478870 scopus 로고    scopus 로고
    • Nonrandom packaging of host RNAs in Moloney murine leukemia virus
    • DOI 10.1128/JVI.79.21.13528-13537.2005
    • Onafuwa-Nuga, A. A., King, S. R. and Telesnitsky, A. (2005) Nonrandom packaging of host RNAs in moloney murine leukemia virus. J. Virol., 79, 13528-13537. (Pubitemid 41508165)
    • (2005) Journal of Virology , vol.79 , Issue.21 , pp. 13528-13537
    • Onafuwa-Nuga, A.A.1    King, S.R.2    Telesnitsky, A.3
  • 56
    • 2442442938 scopus 로고    scopus 로고
    • Myocyte enhancer factor 2 mediates calcium-dependent transcription of the interleukin-2 gene in T lymphocytes. A calcium signaling module that is distinct from but collaborates with the nuclear factor of activated T cells (NFAT)
    • DOI 10.1074/jbc.C300487200
    • Pan, F., Ye, Z., Cheng, L. and Liu, J. O. (2004) Myocyte enhancer factor 2 mediates calcium-dependent transcription of the interleukin-2 gene in T lymphocytes: a calcium signaling module that is distinct from but collaborates with the nuclear factor of activated T cells (NFAT). J. Biol. Chem., 279, 14477-14480. (Pubitemid 38618832)
    • (2004) Journal of Biological Chemistry , vol.279 , Issue.15 , pp. 14477-14480
    • Pan, F.1    Ye, Z.2    Cheng, L.3    Liu, J.O.4
  • 57
    • 33745599586 scopus 로고    scopus 로고
    • Identification and characterization of two novel classes of small RNAs in the mouse germline: Retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    • DOI 10.1101/gad.1425706
    • Watanabe, T., Takeda, A., Tsukiyama, T., Mise, K., Okuno, T., Sasaki, H., Minami, N. and Imai, H. (2006) Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes. Genes Dev., 20, 1732-1743. (Pubitemid 43992882)
    • (2006) Genes and Development , vol.20 , Issue.13 , pp. 1732-1743
    • Watanabe, T.1    Takeda, A.2    Tsukiyama, T.3    Mise, K.4    Okuno, T.5    Sasaki, H.6    Minami, N.7    Imai, H.8
  • 58
    • 33748363713 scopus 로고    scopus 로고
    • L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells
    • DOI 10.1038/nsmb1141, PII NSMB1141
    • Yang, N. and Kazazian, H. H. Jr (2006) L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells. Nat. Struct. Mol. Biol., 13, 763-771. (Pubitemid 44338769)
    • (2006) Nature Structural and Molecular Biology , vol.13 , Issue.9 , pp. 763-771
    • Yang, N.1    Kazazian Jr., H.H.2
  • 59
  • 60
    • 80053592894 scopus 로고    scopus 로고
    • Unexpected functions of trna and trna processing enzymes
    • Hurto, R. L. (2011) Unexpected functions of tRNA and tRNA processing enzymes. Adv Exp. Med. Biol., 722, 137-155.
    • (2011) Adv Exp. Med. Biol. , vol.722 , pp. 137-155
    • Hurto, R.L.1
  • 61
    • 66149125192 scopus 로고    scopus 로고
    • The phloem-delivered rna pool contains small noncoding rnas and interferes with translation
    • Zhang, S., Sun, L. and Kragler, F. (2009) The phloem-delivered RNA pool contains small noncoding RNAs and interferes with translation. Plant Physiol., 150, 378-387.
    • (2009) Plant Physiol. , vol.150 , pp. 378-387
    • Zhang, S.1    Sun, L.2    Kragler, F.3
  • 62
    • 77951213498 scopus 로고    scopus 로고
    • Angiogenin-induced trna-derived stress-induced rnas promote stress-induced stress granule assembly
    • Emara, M. M., Ivanov, P., Hickman, T., Dawra, N., Tisdale, S., Kedersha, N., Hu, G. F. and Anderson, P. (2010) Angiogenin-induced tRNA-derived stress-induced RNAs promote stress-induced stress granule assembly. J. Biol. Chem., 285, 10959-10968.
    • (2010) J. Biol. Chem. , vol.285 , pp. 10959-10968
    • Emara, M.1    Ivanov, P.2    Hickman, T.3    Dawra, N.4    Tisdale, S.5    Kedersha, N.6    Hu, G.F.7    Anderson, P.8
  • 64
    • 0347993084 scopus 로고    scopus 로고
    • Evidence That HIV Budding in Primary Macrophages Occurs through the Exosome Release Pathway
    • DOI 10.1074/jbc.M309009200
    • Nguyen, D. G., Booth, A., Gould, S. J. and Hildreth, J. E. (2003) Evidence that HIV budding in primary macrophages occurs through the exosome release pathway. J. Biol. Chem., 278, 52347-52354. (Pubitemid 38035824)
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.52 , pp. 52347-52354
    • Nguyen, D.G.1    Booth, A.2    Gould, S.J.3    Hildreth, J.E.K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.