-
1
-
-
34547549758
-
Structure and evolution of the Ivy protein family, unexpected lysozyme inhibitors in Gram-negative bacteria
-
Abergel C., Monchois V., Byrne D., Chenivesse S., Lembo F., Lazzaroni J.C., Claverie J.M. Structure and evolution of the Ivy protein family, unexpected lysozyme inhibitors in Gram-negative bacteria. Proc. Natl. Acad. Sci. USA 2007, 104:6394-6399.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 6394-6399
-
-
Abergel, C.1
Monchois, V.2
Byrne, D.3
Chenivesse, S.4
Lembo, F.5
Lazzaroni, J.C.6
Claverie, J.M.7
-
2
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams P.D., Afonine P.V., Bunkoczi G., Chen V.B., Davis I.W., Echols N., Headd J.J., Hung L.W., Kapral G.J., Grosse-Kunstleve R.W., McCoy A.J., Moriarty N.W., Oeffner R., Read R.J., Richardson D.C., Richardson J.S., Terwilliger T.C., Zwart P.H. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:213-221.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
McCoy, A.J.11
Moriarty, N.W.12
Oeffner, R.13
Read, R.J.14
Richardson, D.C.15
Richardson, J.S.16
Terwilliger, T.C.17
Zwart, P.H.18
-
3
-
-
77951759131
-
Lysozymes in the animal kingdom
-
Callewaert L., Michiels C.W. Lysozymes in the animal kingdom. J. Biosci. 2010, 35:127-160.
-
(2010)
J. Biosci.
, vol.35
, pp. 127-160
-
-
Callewaert, L.1
Michiels, C.W.2
-
4
-
-
42949124018
-
A new family of lysozyme inhibitors contributing to lysozyme tolerance in Gram-negative bacteria
-
Callewaert L., Aertsen A., Deckers D., Vanoirbeek K.G., Vanderkelen L., Van Herreweghe J.M., Masschalck B., Nakimbugwe D., Robben J., Michiels C.W. A new family of lysozyme inhibitors contributing to lysozyme tolerance in Gram-negative bacteria. PLoS Pathog. 2008, 4:e1000019.
-
(2008)
PLoS Pathog.
, vol.4
-
-
Callewaert, L.1
Aertsen, A.2
Deckers, D.3
Vanoirbeek, K.G.4
Vanderkelen, L.5
Van Herreweghe, J.M.6
Masschalck, B.7
Nakimbugwe, D.8
Robben, J.9
Michiels, C.W.10
-
5
-
-
77952039181
-
The vertebrate lysozyme inhibitor Ivy functions to inhibit the activity of lytic transglycosylase
-
Clarke C.A., Scheurwater E.M., Clarke A.J. The vertebrate lysozyme inhibitor Ivy functions to inhibit the activity of lytic transglycosylase. J. Biol. Chem. 2010, 285:14843-14847.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 14843-14847
-
-
Clarke, C.A.1
Scheurwater, E.M.2
Clarke, A.J.3
-
7
-
-
0028103275
-
The CCP4 suite: programs for protein crystallography. Acta Crystallogr
-
Collaborative Computational Project, N.
-
Collaborative Computational Project, N., 1994. The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D Biol. Crystallogr. 50, 760-763.
-
(1994)
D Biol. Crystallogr.
, vol.50
, pp. 760-763
-
-
-
8
-
-
34547592557
-
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
-
Davis I.W., Leaver-Fay A., Chen V.B., Block J.N., Kapral G.J., Wang X., Murray L.W., Arendall W.B., Snoeyink J., Richardson J.S., Richardson D.C. MolProbity: all-atom contacts and structure validation for proteins and nucleic acids. Nucleic Acids Res. 2007, 35:W375-383.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall, W.B.8
Snoeyink, J.9
Richardson, J.S.10
Richardson, D.C.11
-
9
-
-
79251528841
-
Modifications to the peptidoglycan backbone help bacteria to establish infection
-
Davis K.M., Weiser J.N. Modifications to the peptidoglycan backbone help bacteria to establish infection. Infect. Immun. 2011, 79:562-570.
-
(2011)
Infect. Immun.
, vol.79
, pp. 562-570
-
-
Davis, K.M.1
Weiser, J.N.2
-
10
-
-
2542582286
-
Periplasmic lysozyme inhibitor contributes to lysozyme resistance in Escherichia coli
-
Deckers D., Masschalck B., Aertsen A., Callewaert L., Van Tiggelen C.G., Atanassova M., Michiels C.W. Periplasmic lysozyme inhibitor contributes to lysozyme resistance in Escherichia coli. Cell. Mol. Life Sci. 2004, 61:1229-1237.
-
(2004)
Cell. Mol. Life Sci.
, vol.61
, pp. 1229-1237
-
-
Deckers, D.1
Masschalck, B.2
Aertsen, A.3
Callewaert, L.4
Van Tiggelen, C.G.5
Atanassova, M.6
Michiels, C.W.7
-
11
-
-
0026095436
-
Killing of Gram -negative bacteria by lactoferrin and lysozyme
-
Ellison R.T., Giehl T.J. Killing of Gram -negative bacteria by lactoferrin and lysozyme. J. Clin. Invest. 1991, 88:1080-1091.
-
(1991)
J. Clin. Invest.
, vol.88
, pp. 1080-1091
-
-
Ellison, R.T.1
Giehl, T.J.2
-
14
-
-
0029619259
-
Knowledge-based protein secondary structure assignment
-
Frishman D., Argos P. Knowledge-based protein secondary structure assignment. Proteins 1995, 23:566-579.
-
(1995)
Proteins
, vol.23
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
15
-
-
0035012982
-
STRAP: editor for structural alignments of proteins
-
Gille C., Frommel C. STRAP: editor for structural alignments of proteins. Bioinformatics 2001, 17:377-378.
-
(2001)
Bioinformatics
, vol.17
, pp. 377-378
-
-
Gille, C.1
Frommel, C.2
-
17
-
-
0141484613
-
PRIMUS: a Windows PC-based system for small-angle scattering data analysis
-
Konarev P.V., Volkov V.V., Sokolova A.V., Koch M.H.J., Svergun D.I. PRIMUS: a Windows PC-based system for small-angle scattering data analysis. J. Appl. Crystallogr. 2003, 36:1277-1282.
-
(2003)
J. Appl. Crystallogr.
, vol.36
, pp. 1277-1282
-
-
Konarev, P.V.1
Volkov, V.V.2
Sokolova, A.V.3
Koch, M.H.J.4
Svergun, D.I.5
-
18
-
-
34548232365
-
Inference of macromolecular assemblies from crystalline state
-
Krissinel E., Henrick K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 2007, 372:774-797.
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 774-797
-
-
Krissinel, E.1
Henrick, K.2
-
19
-
-
48449092586
-
Structural evidence for lack of inhibition of fish goose-type lysozymes by a bacterial inhibitor of lysozyme
-
Kyomuhendo P., Nilsen I.W., Brandsdal B.O., Smalas A.O. Structural evidence for lack of inhibition of fish goose-type lysozymes by a bacterial inhibitor of lysozyme. J. Mol. Model. 2008, 14:777-788.
-
(2008)
J. Mol. Model.
, vol.14
, pp. 777-788
-
-
Kyomuhendo, P.1
Nilsen, I.W.2
Brandsdal, B.O.3
Smalas, A.O.4
-
20
-
-
78751580417
-
Molecular basis of bacterial defense against host lysozymes: X-ray structures of periplasmic lysozyme inhibitors PliI and PliC
-
Leysen S., Van Herreweghe J.M., Callewaert L., Heirbaut M., Buntinx P., Michiels C.W., Strelkov S.V. Molecular basis of bacterial defense against host lysozymes: X-ray structures of periplasmic lysozyme inhibitors PliI and PliC. J. Mol. Biol. 2011, 405:1233-1245.
-
(2011)
J. Mol. Biol.
, vol.405
, pp. 1233-1245
-
-
Leysen, S.1
Van Herreweghe, J.M.2
Callewaert, L.3
Heirbaut, M.4
Buntinx, P.5
Michiels, C.W.6
Strelkov, S.V.7
-
21
-
-
33847608289
-
Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC
-
Li M.Z., Elledge S.J. Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat. Methods 2007, 4:251-256.
-
(2007)
Nat. Methods
, vol.4
, pp. 251-256
-
-
Li, M.Z.1
Elledge, S.J.2
-
22
-
-
34447508216
-
Phaser crystallographic software
-
McCoy A.J., Grosse-Kunstleve R.W., Adams P.D., Winn M.D., Storoni L.C., Read R.J. Phaser crystallographic software. J. Appl. Crystallogr. 2007, 40:658-674.
-
(2007)
J. Appl. Crystallogr.
, vol.40
, pp. 658-674
-
-
McCoy, A.J.1
Grosse-Kunstleve, R.W.2
Adams, P.D.3
Winn, M.D.4
Storoni, L.C.5
Read, R.J.6
-
23
-
-
0035947615
-
Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme
-
Monchois V., Abergel C., Sturgis J., Jeudy S., Claverie J.M. Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme. J. Biol. Chem. 2001, 276:18437-18441.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 18437-18441
-
-
Monchois, V.1
Abergel, C.2
Sturgis, J.3
Jeudy, S.4
Claverie, J.M.5
-
24
-
-
2142750049
-
Breaking good resolutions with ARP/wARP
-
Morris R.J., Zwart P.H., Cohen S., Fernandez F.J., Kakaris M., Kirillova O., Vonrhein C., Perrakis A., Lamzin V.S. Breaking good resolutions with ARP/wARP. Journal of synchrotron radiation 2004, 11:56-59.
-
(2004)
Journal of synchrotron radiation
, vol.11
, pp. 56-59
-
-
Morris, R.J.1
Zwart, P.H.2
Cohen, S.3
Fernandez, F.J.4
Kakaris, M.5
Kirillova, O.6
Vonrhein, C.7
Perrakis, A.8
Lamzin, V.S.9
-
25
-
-
0242288826
-
Urochordates carry multiple genes for goose-type lysozyme and no genes for chicken- or invertebrate-type lysozymes
-
Nilsen I.W., Myrnes B., Edvardsen R.B., Chourrout D. Urochordates carry multiple genes for goose-type lysozyme and no genes for chicken- or invertebrate-type lysozymes. Cell. Mol. Life Sci. 2003, 60:2210-2218.
-
(2003)
Cell. Mol. Life Sci.
, vol.60
, pp. 2210-2218
-
-
Nilsen, I.W.1
Myrnes, B.2
Edvardsen, R.B.3
Chourrout, D.4
-
26
-
-
23844492576
-
Auto-Rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment
-
Panjikar S., Parthasarathy V., Lamzin V.S., Weiss M.S., Tucker P.A. Auto-Rickshaw: an automated crystal structure determination platform as an efficient tool for the validation of an X-ray diffraction experiment. Acta Crystallogr. D Biol. Crystallogr. 2005, 61:449-457.
-
(2005)
Acta Crystallogr. D Biol. Crystallogr.
, vol.61
, pp. 449-457
-
-
Panjikar, S.1
Parthasarathy, V.2
Lamzin, V.S.3
Weiss, M.S.4
Tucker, P.A.5
-
27
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis A., Morris R., Lamzin V.S. Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 1999, 6:458-463.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
28
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen E.F., Goddard T.D., Huang C.C., Couch G.S., Greenblatt D.M., Meng E.C., Ferrin T.E. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 2004, 25:1605-1612.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
29
-
-
34548751368
-
Meta-PPISP: a meta web server for protein-protein interaction site prediction
-
Qin S., Zhou H.X. Meta-PPISP: a meta web server for protein-protein interaction site prediction. Bioinformatics 2007, 23:3386-3387.
-
(2007)
Bioinformatics
, vol.23
, pp. 3386-3387
-
-
Qin, S.1
Zhou, H.X.2
-
31
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier F.W. Protein production by auto-induction in high density shaking cultures. Protein Expr. Purif. 2005, 41:207-234.
-
(2005)
Protein Expr. Purif.
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
32
-
-
0029185933
-
CRYSOL - a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates
-
Svergun D., Barberato C., Koch M.H.J. CRYSOL - a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates. J. Appl. Crystallogr. 1995, 28:768-773.
-
(1995)
J. Appl. Crystallogr.
, vol.28
, pp. 768-773
-
-
Svergun, D.1
Barberato, C.2
Koch, M.H.J.3
-
34
-
-
77950619856
-
Lysozyme inhibitor conferring bacterial tolerance to invertebrate type lysozyme
-
Van Herreweghe J.M., Vanderkelen L., Callewaert L., Aertsen A., Compernolle G., Declerck P.J., Michiels C.W. Lysozyme inhibitor conferring bacterial tolerance to invertebrate type lysozyme. Cell. Mol. Life Sci. 2010, 67:1177-1188.
-
(2010)
Cell. Mol. Life Sci.
, vol.67
, pp. 1177-1188
-
-
Van Herreweghe, J.M.1
Vanderkelen, L.2
Callewaert, L.3
Aertsen, A.4
Compernolle, G.5
Declerck, P.J.6
Michiels, C.W.7
-
35
-
-
79953728445
-
Identification of a bacterial inhibitor against g-type lysozyme
-
Vanderkelen L., Van Herreweghe J.M., Vanoirbeek K.G., Baggerman G., Myrnes B., Declerck P.J., Nilsen I.W., Michiels C.W., Callewaert L. Identification of a bacterial inhibitor against g-type lysozyme. Cell. Mol. Life Sci. 2011, 68:1053-1064.
-
(2011)
Cell. Mol. Life Sci.
, vol.68
, pp. 1053-1064
-
-
Vanderkelen, L.1
Van Herreweghe, J.M.2
Vanoirbeek, K.G.3
Baggerman, G.4
Myrnes, B.5
Declerck, P.J.6
Nilsen, I.W.7
Michiels, C.W.8
Callewaert, L.9
-
36
-
-
33847163530
-
Ligation independent cloning vectors for expression of SUMO fusions
-
Weeks S.D., Drinker M., Loll P.J. Ligation independent cloning vectors for expression of SUMO fusions. Protein Expr. Purif. 2007, 53:40-50.
-
(2007)
Protein Expr. Purif.
, vol.53
, pp. 40-50
-
-
Weeks, S.D.1
Drinker, M.2
Loll, P.J.3
-
37
-
-
57049089908
-
Structural basis for the recognition of lysozyme by MliC, a periplasmic lysozyme inhibitor in Gram-negative bacteria
-
Yum S., Kim M.J., Xu Y., Jin X.L., Yoo H.Y., Park J.W., Gong J.H., Choe K.M., Lee B.L., Ha N.C. Structural basis for the recognition of lysozyme by MliC, a periplasmic lysozyme inhibitor in Gram-negative bacteria. Biochem. Biophys. Res. Commun. 2009, 378:244-248.
-
(2009)
Biochem. Biophys. Res. Commun.
, vol.378
, pp. 244-248
-
-
Yum, S.1
Kim, M.J.2
Xu, Y.3
Jin, X.L.4
Yoo, H.Y.5
Park, J.W.6
Gong, J.H.7
Choe, K.M.8
Lee, B.L.9
Ha, N.C.10
-
38
-
-
34548767667
-
Interaction-site prediction for protein complexes: a critical assessment
-
Zhou H.X., Qin S. Interaction-site prediction for protein complexes: a critical assessment. Bioinformatics 2007, 23:2203-2209.
-
(2007)
Bioinformatics
, vol.23
, pp. 2203-2209
-
-
Zhou, H.X.1
Qin, S.2
|