Cryptic Diversity in the Ubiquist Species Parisotoma notabilis (Collembola, Isotomidae): A Long-Used Chimeric Species?

PLoS ONE

Volumn 7, Issue 9, 2012, Pages

  Porco, David ^a   Potapov, Mikhail ^b   Bedos, Anne ^c   Busmachiu, Galina ^d   Weiner, Wanda M ^e   Hamra Kroua, Salah ^f   Deharveng, Louis ^c  

^a UNIVERSITÉ DE ROUEN   (France)

^b MOSCOW STATE PEDAGOGICAL UNIVERSITY   (Russian Federation)

^c MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^d INSTITUTE OF CHEMISTRY   (Moldova)

^e INSTITUTE OF SYSTEMATICS AND EVOLUTION OF ANIMALS   (Poland)

^f Universite Mentouri Constantine   (Algeria)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 28S;

ARTICLE; CELL NUCLEUS; COLLEMBOLA; EUROPE; GENE SEQUENCE; GENETIC DISTANCE; GENETIC VARIABILITY; GENUS; GEOGRAPHIC DISTRIBUTION; MITOCHONDRION; NONHUMAN; NUCLEOTIDE SEQUENCE; PARISOTOMA NOTABILIS; SIGNAL TRANSDUCTION; SPECIES DIFFERENCE; UNINDEXED SEQUENCE;

ANIMALS; ARTHROPODS; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

COLLEMBOLA; ISOTOMIDAE; PARISOTOMA; PARISOTOMA NOTABILIS;

EID: 84866870459     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0046056     Document Type: Article

References (73)

1. Salmon JT, (1941) The Collembolan Fauna of New Zealand, Including a Discussion of its Distribution and Affinities. Trans Royal Society of New Zealand 70: 282-431.
2. Potapov M, (2001) Synopses on Palaearctic Collembola. Volume 3. Isotomidae. Abhandlungen und Berichte des Naturkundemuseums Goerlitz 73: 1-603.
3. Deharveng L, (1996) Soil Collembola diversity, endemism, and reforestation: A case study in the Pyrenees (France). Conservation Biology 10: 74-84.
4. Salmon S, Bedos A, Villemant C, Rome Q, Daugeron C, et al. (2010) Diversity, structure and endemicity of earthworm and springtail communities of a softly managed beech forest in the Pyrenees (France). Revue D'Ecologie-La Terre Et La Vie 65: 45-62.
5. Lee BH, (1977) Study of Collembola fauna of Korea.4. Family Isotomidae (Insecta), with description of 5 new species. Pacific Insects 17: 155-169.
6. Martynova EF, Berman DI, Chelnokov VT (1977) Fauna of springtails (Collembola) of south slopes of Khasyn range. Komponenty biocenozov severnogo Okhotomor'ya, 102-132.
7. Potapov MB, (1991) Species of the genus Isotoma subgenus Parisotoma Bagnall 1940 and Sericeotoma Collembola Isotomidae of USSR fauna. Acta Zoologica Cracoviensia 34: 267-301.
8. Petersen H, (1971) Parthenogenesis in 2 common species of Collembola Tullbergia krausbaueri and Isotoma notabilis. Revue d'Ecologie et de Biologie du Sol 8: 133-138.
9. Chahartaghi M, Scheu S, Ruess L, (2006) Sex ratio and mode of reproduction in Collembola of an oak-beech forest. Pedobiologia 50: 331-340.
10. Fjellberg A, (1977) Identity of Isotoma ekmani nom nov pro-I pallida Agrell, 1939 (nec Nicolet, 1842, Moniez, 1894) (Collembola Isotomidae). Entomologica Scandinavica 8: 9-11.
11. Deharveng L, (1981) Collemboles des îles subantarctiques de l'océan indien. Mission j. Travé 1972-1973. CNFRA Biologie des Sols 48: 33-108.
12. Rusek J (1984) New species and review of the Isotoma notabilis species-group (Collembola, Isotomidae). Acta Entomologica Bohemoslovaca 81: 343-&.
13. Fromm H (1997) Räumliche und zeitliche variabilität der collembolenfauna und ihre bedeutung für c- und n-umsatz in einer agrarlandschaft- fam-bericht 26. Cottbus: Techn. Univ., Diss.
14. Alvarez T, Frampton GK, Goulson D, (1997) Population dynamics of epigeic Collembola in arable fields: The importance of hedgerow proximity and crop type. Pedobiologia 41: 110-114.
15. Larink O (1997) Springtails and mites: important knots in the food web of soils; Benckiser G, editor: Marcel Dekker, Inc. 225-264 p.
16. Lopes CM, da Gama MM, (1994) The effect of fire on collembolan populations of Mata da Margaraca (Portugal). European Journal of Soil Biology 30: 133-141.
17. Kaprus IJ, (1999) The importance of Collembola in the system of bioindication of forest cenoses in the Carpathians. Proceedings of the Shevchenko scientific society- Ecological collection 3: 235-248.
18. Kuznetsova NA, Potapov MB, (1997) Changes in structure of communities of soil springtails (Hexapoda: Collembola) under industrial pollution of the South-taiga bilberry pine forests. Russian Journal of Ecology 28: 386-392.
19. Petersen H, Krogh PH (1987) Effects of perturbing microarthropod communities of a permanent pasture and a ryefield by an insecticide and a fungicide. In: Striganova B, Editors Soil fauna and soil fertility, proc. 9th int. Coll. Soil zool 217-229.
20. Tranvik L, Bengtsson G, Rundgren S, (1993) Relative abundance and resistance traits of 2 Collembola species under metal stress. Journal of Applied Ecology 30: 43-52.
21. Haimi J, SiiraPietikainen A, (1996) Decomposer animal communities in forest soil along heavy metal pollution gradient. Fresenius' Journal of Analytical Chemistry 354: 672-675.
22. Simonsen V, Holmstrup M, Niklasson M, (2004) Genetic differentiation of the parthenogenetic soil collembolan Isotoma notabilis along a copper gradient based on random amplified polymorphic DNA. Pedobiologia 48: 297-303.
23. Van Straalen NM (1996) Critical body concentrations: Their use in bioindication; Van Straalen NMKDA, editor. 5-16 p.
24. Hebert PDN, Cywinska A, Ball SL, DeWaard JR, (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London Series B-Biological Sciences 270: 313-321.
25. Ward RD, (2009) DNA barcode divergence among species and genera of birds and fishes. Molecular Ecology Resources 9: 1077-1085.
26. Zhou X, Adamowicz SJ, Jacobus LM, DeWalt RE, Hebert PDN, (2009) Towards a comprehensive barcode library for arctic life- Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada. Frontiers in Zoology 6: 9.
27. Porco D, Bedos A, Deharveng L, (2010) Description and DNA barcoding assessment of the new species Deutonura gibbosa (Collembola: Neanuridae: Neanurinae), a common springtail of Alps and Jura. Zootaxa 2639: 59-68.
28. Ivanova NV, Dewaard JR, Hebert PDN, (2006) An inexpensive, automation-friendly protocol for recovering high-quality DNA. Molecular Ecology Notes 6: 998-1002.
29. Porco D, Rougerie R, Deharveng L, Hebert P, (2010) Coupling non-destructive DNA extraction and voucher retrieval for small soft-bodied Arthropods in a high-throughput context: the example of Collembola. Molecular Ecology Resources 10: 942-945.
30. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R, (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294-299.
31. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN, (2006) DNA barcodes distinguish species of tropical Lepidoptera. Proceedings of the National Academy of Sciences of the United States of America 103: 968-971.
32. Hajibabaei M, DeWaard JR, Ivanova NV, Ratnasingham S, Dooh RT, et al. (2005) Critical factors for assembling a high volume of DNA barcodes. Philosophical Transactions of the Royal Society B-Biological Sciences 360: 1959-1967.
33. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
34. D'Haese CA, (2002) Were the first springtails semi-aquatic? A phylogenetic approach by means of 28S rDNA and optimization alignment. Proceedings of the Royal Society of London B 269: 1143-1151.
35. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596-1599.
36. Saitou N, Nei M, (1987) The neighbor-joining method- a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
37. Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide-sequences. Journal of Molecular Evolution 16: 111-120.
38. Letunic I, Bork P, (2007) Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 23: 127-128.
39. Hogg ID, Hebert PDN, (2004) Biological identification of springtails (Hexapoda: Collembola) from the Canadian Arctic, using mitochondrial DNA barcodes. Canadian Journal of Zoology-Revue Canadienne De Zoologie 82: 749-754.
40. Rougerie R, Decaens T, Deharveng L, Porco D, James SW, et al. (2009) DNA barcodes for soil animal taxonomy. Pesquisa Agropecuaria Brasileira 44: 789-802.
41. Chahartaghi-Abnieh M (2007) Trophic Niche Differentiation, Sex Ratio and Phylogeography of European Collembola. Ph.D. Thesis.
42. Fanciulli PP, Frati F, Dallai R, Rusek J, (1991) High genetic divergence among populations of Tetrodontophora bielanensis (Insecta, Collembola) in Europe. Revue D'Ecologie Et De Biologie Du Sol 28: 165-173.
43. Fanciulli PP, Melegari D, Carapelli A, Frati F, Dallai R, (2000) Population structure, gene flow and evolutionary relationships in four species of the genera Tomocerus and Pogonognathellus (Collembola, Tomoceridae). Biological Journal of the Linnean Society 70: 221-238.
44. Fanciulli PP, Carapelli A, Belloni M, Dallai R, Frati F, (2009) Allozyme variation in the springtails Allacma fusca and A. gallica (Collembola, Sminthuridae). Pedobiologia 52: 309-324.
45. Frati F, Fanciulli PP, Dallai R, (1992) Genetic diversity and taxonomy in soil-dwelling Insects- the genus Orchesella. Journal of Heredity 83: 275-281.
46. Frati F, Carapelli A, Fanciulli PP, Dallai R, (1995) The genus Isotomurus: Where molecular markers help to evaluate the importance of morphological characters for the diagnosis of species. Polskie Pismo Entomologiczne 64: 41-51.
47. Carapelli A, Fanciulli PP, Frati F, Dallai R, (1995a) The use of genetic markers for the diagnosis of sibling species in the genus Isotomurus (Insecta, Collembola). Bollettino Di Zoologia 62: 71-76.
48. Carapelli A, Frati F, Fanciulli PP, Dallai R, (1995b) Genetic differentiation of 6 sympatric species of Isotomurus (Collembola, Isotomidae)- is there any difference in their microhabitat preference? European Journal of Soil Biology 31: 87-99.
49. Stevens MI, Greenslade P, Hogg ID, Sunnucks P, (2006) Southern hemisphere springtails: Could any have survived glaciation of Antarctica? Molecular Biology and Evolution 23: 874-882.
50. Cicconardi F, Nardi F, Emerson BC, Frati F, Fanciulli PP, (2010) Deep phylogeographic divisions and long-term persistence of forest invertebrates (Hexapoda: Collembola) in the North-Western Mediterranean basin. Molecular Ecology 19: 386-400.
51. Torricelli G, Carapelli A, Convey P, Nardi F, Boore JL, et al. (2010) High divergence across the whole mitochondrial genome in the "pan-Antarctic" springtail Friesea grisea: Evidence for cryptic species? Gene (Amsterdam) 449: 30-40.
52. Soto Adames FN, (2000) Phylogeny of Neotropical Lepidocyrtus (Collembola: Entomobryidae): first assessment of patterns of speciation in Puerto Rico and phylogenetic relevance of some subgeneric diagnostic characters. Systematic Entomology 25: 485-502.
53. Porco D, Bedos A, Greenslade P, Janion C, Skarżyński D, et al. (2012) Challenging species delimitation in Collembola: cryptic diversity among common springtails unveiled by DNA barcoding. Invertebrates Systematics. Accepted.
54. Hausmann A, Hebert PDN, Mitchell A, Rougerie R, Sommerer M, et al. (2009) Revision of the Australian Oenochroma vinaria Guenee, 1858 species-complex (Lepidoptera: Geometridae, Oenochrominae): DNA barcoding reveals cryptic diversity and assesses status of type specimen without dissection. Zootaxa: 1-21.
55. Deharveng L, (2004) Recent advances in Collembola systematics. Pedobiologia 48: 415-433.
56. James SW, Porco D, Decaëns T, Richard B, Rougerie R, et al. (2010) DNA Barcoding Reveals Cryptic Diversity in Lumbricus terrestris L., 1758 (Clitellata): Resurrection of L. herculeus (Savigny, 1826). PLoS ONE 5: e15629.
57. Decaëns T, Porco D, Rougerie R, Brown GG, James SW (2012) Potential of DNA barcoding for earthworm research in taxonomy and ecology. Applied Soil Ecology. In press.
58. Porco D, Decaëns T, Deharveng L, James S.W, Skarżyński D, et al. (2012). Biological invasions in soil: DNA barcoding as a monitoring tool in a multiple taxa survey targeting European earthworms and collembolans in North America. Biological Invasions. In press.
59. Hebert PDN, Penton EH, Burns JM, Janzen DH, Hallwachs W, (2004) Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator. Proceedings of the National Academy of Sciences of the United States of America 101: 14812-14817.
60. Lefébure T, Douady CJ, Gouy M, Trontelj P, Briolay J, et al. (2006) Phylogeography of a subterranean amphipod reveals cryptic diversity and dynamic evolution in extreme environments. Molecular Ecology 15: 1797-1806.
61. Vaglia T, Haxaire J, Kitching IJ, Meusnier I, Rougerie R, (2008) Morphology and DNA barcoding reveal three cryptic species within the Xylophanes neoptolemus and loelia species-groups (Lepidoptera: Sphingidae). Zootaxa 1923: 18-36.
62. Smith MA, Rodriguez JJ, Whitfield JB, Deans AR, Janzen DH, et al. (2008) Extreme diversity of tropical parasitoid wasps exposed by iterative integration of natural history, DNA barcoding, morphology, and collections. Proceedings of the National Academy of Sciences of the United States of America 105: 12359-12364.
63. King RA, Tibble AL, Symondson WOC, (2008) Opening a can of worms: unprecedented sympatric cryptic diversity within British lumbricid earthworms. Molecular Ecology 17: 4684-4698.
64. Radulovici AE, Sainte-Marie B, Dufresne F, (2009) DNA barcoding of marine crustaceans from the Estuary and Gulf of St Lawrence: a regional-scale approach. Molecular Ecology Resources 9: 181-187.
65. Perez-Losada M, Ricoy M, Marshall JC, Dominguez J, (2009) Phylogenetic assessment of the earthworm Aporrectodea caliginosa species complex (Oligochaeta: Lumbricidae) based on mitochondrial and nuclear DNA sequences. Molecular Phylogenetics and Evolution 52: 293-302.
66. Novo M, Almodovar A, Fernandez R, Trigo D, Diaz Cosin DJ, (2010) Cryptic speciation of Hormogastrid earthworms revealed by mitochondrial and nuclear data. Molecular Phylogenetics and Evolution 56: 507-512.
67. Havermans C, Nagy ZT, Sonet G, De Broyer C, Martin P, (2011) DNA barcoding reveals new insights into the diversity of Antarctic species of Orchomene sensu lato (Crustacea: Amphipoda: Lysianassoidea). Deep-Sea Research Part Ii-Topical Studies in Oceanography 58: 230-241.
68. Pfenninger M, Schwenk K (2007) Cryptic animal species are homogeneously distributed among taxa and biogeographical regions. BMC Evolutionary Biology 7.
69. Bickford D, Lohman DJ, Sodhi NS, Ng PKL, Meier R, et al. (2007) Cryptic species as a window on diversity and conservation. Trends in Ecology & Evolution 22: 148-155.
70. Fjellberg A (1980) Identification Keys to Norwegian Collembola.
71. Barraclough TG, Birky CW, Burt A, (2003) Diversification in sexual and asexual organisms. Evolution 57: 2166-2172.
72. Birky CW Jr, Barraclough TG (2009) Asexual Speciation; Schon I, Martens K, VanDijk P, editors: Springer. 201-216 p.
73. Heethoff M, Domes K, Laumann M, Maraun M, Norton RA, et al. (2007) High genetic divergences indicate ancient separation of parthenogenetic lineages of the Oribatid mite Platynothrus peltifer (Acari, Oribatida). Journal of Evolutionary Biology 20: 392-402.