-
1
-
-
0033534567
-
Female × male interactions in Drosophila sperm competition
-
(doi:10.1126/science.283.5399.217)
-
Clark, A.G., Begun, D. J. & Prout, T. 1999 Female × male interactions in Drosophila sperm competition. Science 283, 217-220. (doi:10.1126/science.283.5399.217)
-
(1999)
Science
, vol.283
, pp. 217-220
-
-
Clark, A.G.1
Begun, D.J.2
Prout, T.3
-
2
-
-
34548458186
-
Seminal influences: Drosophila Acps and the molecular interplay between males and females during reproduction
-
(doi:10.1093/icb/icm046)
-
Ram, K. R. & Wolfner, M. F. 2007 Seminal influences: Drosophila Acps and the molecular interplay between males and females during reproduction. Int. Comp. Biol. 47, 427-445. (doi:10.1093/icb/icm046)
-
(2007)
Int. Comp. Biol
, vol.47
, pp. 427-445
-
-
Ram, K.R.1
Wolfner, M.F.2
-
3
-
-
68249132755
-
Coevolution of interacting fertilization proteins
-
(doi:10.1371/journal.pgen.1000570)
-
Clark, N. L., Gasper, J., Sekino, M., Springer, S. A., Aquadro, C. F. & Swanson, W. J. 2009 Coevolution of interacting fertilization proteins. PLoS Genet. 5, e1000570. (doi:10.1371/journal.pgen.1000570)
-
(2009)
PLoS Genet
, vol.5
-
-
Clark, N.L.1
Gasper, J.2
Sekino, M.3
Springer, S.A.4
Aquadro, C.F.5
Swanson, W.J.6
-
4
-
-
17644388820
-
Escalation, retreat, and female indifference as alternative outcomes of sexually antagonistic coevolution
-
(doi:10.1086/429395)
-
Rowe, L., Cameron, E. & Day, T. 2005 Escalation, retreat, and female indifference as alternative outcomes of sexually antagonistic coevolution. Am. Nat. 165, S5-S18. (doi:10.1086/429395)
-
(2005)
Am. Nat
, vol.165
-
-
Rowe, L.1
Cameron, E.2
Day, T.3
-
5
-
-
17644400408
-
-
eds J. R. Krebs & T. Clutton-Brock). Princeton, NJ: Princeton University Press
-
Arnqvist, G. & Rowe, L. 2005 Sexual conflict (eds J. R. Krebs & T. Clutton-Brock). Princeton, NJ: Princeton University Press.
-
(2005)
Sexual Conflict
-
-
Arnqvist, G.1
Rowe, L.2
-
6
-
-
72449122929
-
Female nutritional status determines the magnitude and sign of responses to a male ejaculate signal in Drosophila melanogaster
-
(doi:10.1111/j.1420-9101.2009.01882.x)
-
Fricke, C., Bretman, A. & Chapman, T. 2009 Female nutritional status determines the magnitude and sign of responses to a male ejaculate signal in Drosophila melanogaster. J. Evol. Biol. 23, 157-165. (doi:10.1111/j.1420-9101.2009.01882.x)
-
(2009)
J. Evol. Biol
, vol.23
, pp. 157-165
-
-
Fricke, C.1
Bretman, A.2
Chapman, T.3
-
7
-
-
84856265319
-
Interactions between genotype and sexual conflict environment influence transgenerational fitness in Drosophila melanogaster
-
(doi:10.1111/j.1558-5646.2011.01449.x)
-
Brommer, J. E., Fricke, C., Edward, D. A. & Chapman, T. 2011 Interactions between genotype and sexual conflict environment influence transgenerational fitness in Drosophila melanogaster. Evolution 66, 517-531. (doi:10.1111/j.1558-5646.2011.01449.x)
-
(2011)
Evolution
, vol.66
, pp. 517-531
-
-
Brommer, J.E.1
Fricke, C.2
Edward, D.A.3
Chapman, T.4
-
8
-
-
4544255933
-
Functions and analysis of the seminal fluid proteins of male Drosophila melanogaster fruit flies
-
(doi:10.1016/j.peptides.2003.10.023)
-
Chapman, T. & Davies, S. J. 2004 Functions and analysis of the seminal fluid proteins of male Drosophila melanogaster fruit flies. Peptides 25, 1477-1490. (doi:10.1016/j.peptides.2003.10.023)
-
(2004)
Peptides
, vol.25
, pp. 1477-1490
-
-
Chapman, T.1
Davies, S.J.2
-
9
-
-
84860463110
-
Function, developmental genetics, and fitness consequences of a sexually antagonistic trait
-
(doi:10.1126/science.1217258)
-
Khila, A., Abouheif, E. & Rowe, L. 2012 Function, developmental genetics, and fitness consequences of a sexually antagonistic trait. Science 336, 585-589. (doi:10.1126/science.1217258)
-
(2012)
Science
, vol.336
, pp. 585-589
-
-
Khila, A.1
Abouheif, E.2
Rowe, L.3
-
10
-
-
79251560928
-
The genetic basis for male × female interactions underlying variation in reproductive phenotypes of Drosophila
-
(doi:10.1534/genetics.110.123174)
-
Chow, C. Y., Wolfner, M. F. & Clark, A.G. 2010 The genetic basis for male × female interactions underlying variation in reproductive phenotypes of Drosophila. Genetics 186, 1355-1365. (doi:10.1534/genetics.110.123174)
-
(2010)
Genetics
, vol.186
, pp. 1355-1365
-
-
Chow, C.Y.1
Wolfner, M.F.2
Clark, A.G.3
-
11
-
-
0035912788
-
Evolutionary ESTanalysis identifies rapidly evolving male reproductive proteins in Drosophila
-
(doi:10.1073/pnas.131568198)
-
Swanson, W. J., Clark, A. G., Waldrip-Dail, H. M., Wolfner, M. F. & Aquadro, C. F. 2001 Evolutionary ESTanalysis identifies rapidly evolving male reproductive proteins in Drosophila. Proc. Natl Acad. Sci. USA 98, 7375-7379. (doi:10.1073/pnas.131568198)
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 7375-7379
-
-
Swanson, W.J.1
Clark, A.G.2
Waldrip-Dail, H.M.3
Wolfner, M.F.4
Aquadro, C.F.5
-
12
-
-
4344610577
-
Genes regulated by mating, sperm, or seminal proteins in mated female Drosophila melanogaster
-
(doi:10.1016/j.cub.2004.08.028)
-
McGraw, L. A., Gibson, G., Clark, A.G. & Wolfner, M. F. 2004 Genes regulated by mating, sperm, or seminal proteins in mated female Drosophila melanogaster. Curr. Biol. 14, 1509-1514. (doi:10.1016/j.cub.2004.08.028)
-
(2004)
Curr. Biol
, vol.14
, pp. 1509-1514
-
-
McGraw, L.A.1
Gibson, G.2
Clark, A.G.3
Wolfner, M.F.4
-
13
-
-
11144298596
-
A genome-wide analysis of courting and mating responses in Drosophila melanogaster females
-
(doi:10.1139/g04-050)
-
Lawniczak, M. K. & Begun, D. J. 2004 A genome-wide analysis of courting and mating responses in Drosophila melanogaster females. Genome 47, 900-910. (doi:10.1139/g04-050)
-
(2004)
Genome
, vol.47
, pp. 900-910
-
-
Lawniczak, M.K.1
Begun, D.J.2
-
14
-
-
33745879785
-
Mating-responsive genes in reproductive tissues of female Drosophila melanogaster
-
(doi:10.1073/pnas.0604046103)
-
Mack, P. D., Kapelnikov, A., Heifetz, Y. & Bender, M. 2006 Mating-responsive genes in reproductive tissues of female Drosophila melanogaster. Proc. Natl Acad. Sci. USA 103, 10358-10363. (doi:10.1073/pnas.0604046103)
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 10358-10363
-
-
Mack, P.D.1
Kapelnikov, A.2
Heifetz, Y.3
Bender, M.4
-
15
-
-
52049100080
-
Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins
-
(doi:10.1534/genetics.108.086934)
-
McGraw, L. A., Clark, A. G. & Wolfner, M. F. 2008 Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins. Genetics 179, 1395-1408. (doi:10.1534/genetics.108.086934)
-
(2008)
Genetics
, vol.179
, pp. 1395-1408
-
-
McGraw, L.A.1
Clark, A.G.2
Wolfner, M.F.3
-
16
-
-
77957293055
-
Dynamic, mating-induced gene expression changes in females head and brain tissues of Drosophila melanogaster
-
(doi:10.1186/1471-2164-11-541)
-
Dalton, J. E., Kacheria, T. S., Knott, S. R. V., Lebo, M. S., Nishitani, A., Sanders, L. E., Sitirling, E. J., Winbush, A. & Arbeitman, M. N. 2010 Dynamic, mating-induced gene expression changes in females head and brain tissues of Drosophila melanogaster. BMC Genomics 11, 541. (doi:10.1186/1471-2164-11-541)
-
(2010)
BMC Genomics
, vol.11
, pp. 541
-
-
Dalton, J.E.1
Kacheria, T.S.2
Knott, S.R.V.3
Lebo, M.S.4
Nishitani, A.5
Sanders, L.E.6
Sitirling, E.J.7
Winbush, A.8
Arbeitman, M.N.9
-
17
-
-
77957659366
-
Mating alters gene expression patterns in Drosophila melanogaster male heads
-
(doi:10.1186/1471-2164-11-558)
-
Ellis, L. L. & Carney, G. E. 2010 Mating alters gene expression patterns in Drosophila melanogaster male heads. BMC Genomics 11, 558. (doi:10.1186/1471-2164-11-558)
-
(2010)
BMC Genomics
, vol.11
, pp. 558
-
-
Ellis, L.L.1
Carney, G.E.2
-
18
-
-
13944262511
-
Sex peptide causes mating costs in female Drosophila melanogaster
-
(doi:10.1016/j.cub.2005.01.051)
-
Wigby, S. & Chapman, T. 2005 Sex peptide causes mating costs in female Drosophila melanogaster. Curr. Biol. 15, 316-321. (doi:10.1016/j.cub.2005.01.051)
-
(2005)
Curr. Biol
, vol.15
, pp. 316-321
-
-
Wigby, S.1
Chapman, T.2
-
19
-
-
35448953619
-
The hydroxyproline motif of male sex peptide elicits the innate immune response in Drosophila females
-
(doi:10.1111/j.1742-4658.2007.06088.x)
-
Domanitskaya, E. V., Liu, H., Chen, S. & Kubli, E. 2007 The hydroxyproline motif of male sex peptide elicits the innate immune response in Drosophila females. FEBS J. 274, 5659-5668. (doi:10.1111/j.1742-4658.2007.06088.x)
-
(2007)
FEBS J
, vol.274
, pp. 5659-5668
-
-
Domanitskaya, E.V.1
Liu, H.2
Chen, S.3
Kubli, E.4
-
20
-
-
0041386045
-
The sex peptide of Drosophila melanogaster: Female post-mating responses analyzed by using RNA interference
-
(doi:10.1073/pnas.1631635100)
-
Chapman, T., Bangham, J., Vinti, G., Seifried, B., Lung, O., Wolfner, M. F., Smith, H. K. & Partridge, L. 2003 The sex peptide of Drosophila melanogaster: female post-mating responses analyzed by using RNA interference. Proc. Natl Acad. Sci. USA 100, 9923-9928. (doi:10.1073/pnas.1631635100)
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9923-9928
-
-
Chapman, T.1
Bangham, J.2
Vinti, G.3
Seifried, B.4
Lung, O.5
Wolfner, M.F.6
Smith, H.K.7
Partridge, L.8
-
21
-
-
0041886884
-
Sex-peptide is the molecular basis of the sperm effect in Drosophila melanogaster
-
(doi:10.1073/pnas.1631700100)
-
Liu, H. & Kubli, E. 2003 Sex-peptide is the molecular basis of the sperm effect in Drosophila melanogaster. Proc. Natl Acad. Sci. USA 100, 9929-9933. (doi:10.1073/pnas.1631700100)
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9929-9933
-
-
Liu, H.1
Kubli, E.2
-
22
-
-
0042830851
-
Sex peptides: Seminal peptides of the Drosophila male
-
(doi:10.1007/s00018-003-3052)
-
Kubli, E. 2003 Sex peptides: seminal peptides of the Drosophila male. Cell. Mol. Life Sci. 60, 1689-1704. (doi:10.1007/s00018-003-3052)
-
(2003)
Cell. Mol. Life Sci
, vol.60
, pp. 1689-1704
-
-
Kubli, E.1
-
23
-
-
24944516187
-
Drosophila sexpeptide stimulates female innate immune system after mating via the Toll and Imd pathways
-
(doi:10.1016/j.cub.2005.08.048)
-
Peng, J., Zipperlen, P. & Kubli, E. 2005 Drosophila sexpeptide stimulates female innate immune system after mating via the Toll and Imd pathways. Curr. Biol. 15, 1690-1694. (doi:10.1016/j.cub.2005.08.048)
-
(2005)
Curr. Biol
, vol.15
, pp. 1690-1694
-
-
Peng, J.1
Zipperlen, P.2
Kubli, E.3
-
24
-
-
77953856011
-
Sex peptide receptor and neuronal TOR/S6K signaling modulate nutrient balancing in Drosophila
-
(doi:10.1016/j.cub.2010.03.061)
-
Ribeiro, C. & Dickson, B. J. 2010 Sex peptide receptor and neuronal TOR/S6K signaling modulate nutrient balancing in Drosophila. Curr. Biol. 20, 1000-1005. (doi:10.1016/j.cub.2010.03.061)
-
(2010)
Curr. Biol
, vol.20
, pp. 1000-1005
-
-
Ribeiro, C.1
Dickson, B.J.2
-
25
-
-
73949158209
-
Drosophila male sex peotide inhibits siesta sleep and promotes locomotor activity in the post-mated female
-
(doi:10.1098/rspb.2009.1236)
-
Isaac, R. E., Li, C., Leedale, A. E. & Shirras, A. D. 2010 Drosophila male sex peotide inhibits siesta sleep and promotes locomotor activity in the post-mated female. Proc. R. Soc. B 277, 65-70. (doi:10.1098/rspb.2009.1236)
-
(2010)
Proc. R. Soc. B
, vol.277
, pp. 65-70
-
-
Isaac, R.E.1
Li, C.2
Leedale, A.E.3
Shirras, A.D.4
-
26
-
-
78650866455
-
Enteric neurons and systemic signals couple nutritional and reproductive status with intestinal homeostasis
-
(doi:10.1016/j.cmet.2010.12.010)
-
Cognigni, P., Bailey, A. P. & Miguel-Aliaga, I. 2011 Enteric neurons and systemic signals couple nutritional and reproductive status with intestinal homeostasis. Cell Metab. 13, 92-104. (doi:10.1016/j.cmet.2010.12.010)
-
(2011)
Cell Metab
, vol.13
, pp. 92-104
-
-
Cognigni, P.1
Bailey, A.P.2
Miguel-Aliaga, I.3
-
27
-
-
13444250122
-
Gradual release of sperm bound sexpeptide controls female postmating behavior in Drosophila
-
(doi:10.1016/j.cub.2005.01.034)
-
Peng, J., Chen, S., Busser, S., Liu, H., Honegger, T. & Kubli, E. 2005 Gradual release of sperm bound sexpeptide controls female postmating behavior in Drosophila. Curr. Biol. 15, 207-213. (doi:10.1016/j.cub.2005.01.034)
-
(2005)
Curr. Biol
, vol.15
, pp. 207-213
-
-
Peng, J.1
Chen, S.2
Busser, S.3
Liu, H.4
Honegger, T.5
Kubli, E.6
-
28
-
-
78650912236
-
Sex peptide is required for the efficient release of stored sperm in mated Drosophila females
-
(doi:10.1534/genetics.110.119735)
-
Avila, F.W., Ram, K. R., Qazi, M. C. B. & Wolfner, M. F. 2010 Sex peptide is required for the efficient release of stored sperm in mated Drosophila females. Genetics 186, 595-600. (doi:10.1534/genetics.110.119735)
-
(2010)
Genetics
, vol.186
, pp. 595-600
-
-
Avila, F.W.1
Ram, K.R.2
Qazi, M.C.B.3
Wolfner, M.F.4
-
29
-
-
38049005548
-
A receptor that mediates the post-mating switch in Drosophila reproductive behaviour
-
(doi:10.1038/nature06483)
-
Yapici, N., Kim, Y. J., Ribeiro, C. & Dickson, B. J. 2008 A receptor that mediates the post-mating switch in Drosophila reproductive behaviour. Nature 451, 33-37. (doi:10.1038/nature06483)
-
(2008)
Nature
, vol.451
, pp. 33-37
-
-
Yapici, N.1
Kim, Y.J.2
Ribeiro, C.3
Dickson, B.J.4
-
30
-
-
84863721179
-
Neural circuitry underlying Drosophila female postmating behavioral responses
-
(doi:10.1016/j.cub.2012.04.062)
-
Rezaval, C., Pavlou, H. J., Dornan, A. J., Chan, Y.-B., Kravitz, E. A. & Goodwin, S. F. 2012 Neural circuitry underlying Drosophila female postmating behavioral responses. Curr. Biol. 22, 1155-1165. (doi:10.1016/j.cub.2012.04.062)
-
(2012)
Curr. Biol
, vol.22
, pp. 1155-1165
-
-
Rezaval, C.1
Pavlou, H.J.2
Dornan, A.J.3
Chan, Y.-B.4
Kravitz, E.A.5
Goodwin, S.F.6
-
31
-
-
58549090928
-
The benefits of male ejaculate sex peptide transfer in Drosophila melanogaster
-
(doi:10.1111/j.1420-9101.2008.01638.x)
-
Fricke, C., Wigby, S., Hobbs, R. & Chapman, T. 2009 The benefits of male ejaculate sex peptide transfer in Drosophila melanogaster. J. Evol. Biol. 22, 275-286. (doi:10.1111/j.1420-9101.2008.01638.x)
-
(2009)
J. Evol. Biol
, vol.22
, pp. 275-286
-
-
Fricke, C.1
Wigby, S.2
Hobbs, R.3
Chapman, T.4
-
32
-
-
57249108300
-
Adult male nutrition and reproductive success in Drosophila melanogaster
-
(doi:10.1111/j.1558-5646.2008.00515.x)
-
Fricke, C., Bretman, A. & Chapman, T. 2008 Adult male nutrition and reproductive success in Drosophila melanogaster. Evolution 62, 3170-3177. (doi:10.1111/j.1558-5646.2008.00515.x)
-
(2008)
Evolution
, vol.62
, pp. 3170-3177
-
-
Fricke, C.1
Bretman, A.2
Chapman, T.3
-
33
-
-
0025938295
-
Ectopic expression of sex peptide alters reproductive behavior of female D. melanogaster
-
(doi:10.1016/0896-6273(91)90368-A)
-
Aigaki, T., Fleischmann, I., Chen, P. S. & Kubli, E. 1991 Ectopic expression of sex peptide alters reproductive behavior of female D. melanogaster. Neuron 7, 557-563. (doi:10.1016/0896-6273(91)90368-A)
-
(1991)
Neuron
, vol.7
, pp. 557-563
-
-
Aigaki, T.1
Fleischmann, I.2
Chen, P.S.3
Kubli, E.4
-
34
-
-
0033951444
-
The Drosophila seminal fluid protein Acp26Aa stimulates release of oocytes by the ovary
-
(doi:10.1016/S0960-9822(00)00288-8)
-
Heifetz, Y., Lung, O., Frongillo Jr, E. A. & Wolfner, M. F. 2000 The Drosophila seminal fluid protein Acp26Aa stimulates release of oocytes by the ovary. Curr. Biol. 10, 99-102. (doi:10.1016/S0960-9822(00)00288-8)
-
(2000)
Curr. Biol
, vol.10
, pp. 99-102
-
-
Heifetz, Y.1
Lung, O.2
Frongillo, E.A.3
Wolfner, M.F.4
-
35
-
-
0031033457
-
Mating and sex peptide stimulate the accumulation of yolk in oocytes of Drosophila melanogaster
-
(doi:10.1111/j.1432-1033.1997.00732.x)
-
Soller, M., Bownes, M. & Kubli, E. 1997 Mating and sex peptide stimulate the accumulation of yolk in oocytes of Drosophila melanogaster. Eur. J. Biochem. 243, 732-738. (doi:10.1111/j.1432-1033.1997.00732.x)
-
(1997)
Eur. J. Biochem
, vol.243
, pp. 732-738
-
-
Soller, M.1
Bownes, M.2
Kubli, E.3
-
36
-
-
34249804498
-
Using FlyAtlas to identify better Drosophila melanogaster models of human disease
-
(doi:10.1038/ng2049)
-
Chintapalli, V. R., Wang, J. & Dow, J. A. 2007 Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Nat. Genet. 39, 715-20. (doi:10.1038/ng2049)
-
(2007)
Nat. Genet
, vol.39
, pp. 715-720
-
-
Chintapalli, V.R.1
Wang, J.2
Dow, J.A.3
-
37
-
-
13244279520
-
Comparing functional annotation analyses with Catmap
-
(doi:10.1186/1471-2105-5-193)
-
Breslin, T., Eden, P. & Krogh, M. 2004 Comparing functional annotation analyses with Catmap. BMC Bioinform. 5, 193. (doi:10.1186/1471-2105-5-193)
-
(2004)
BMC Bioinform
, vol.5
, pp. 193
-
-
Breslin, T.1
Eden, P.2
Krogh, M.3
-
38
-
-
0347962032
-
A simple method to achieve consistent larval density in bottle cultures
-
Clancy, D. J. & Kennington, W. J. 2001 A simple method to achieve consistent larval density in bottle cultures. Dros. Inf. Serv. 84, 168-169.
-
(2001)
Dros. Inf. Serv
, vol.84
, pp. 168-169
-
-
Clancy, D.J.1
Kennington, W.J.2
-
39
-
-
0034118831
-
Why it is difficult to model sperm displacement in Drosophila melanogaster: The relation between sperm transfer and copulation duration
-
Gilchrist, A. S. & Partridge, L. 2000 Why it is difficult to model sperm displacement in Drosophila melanogaster: the relation between sperm transfer and copulation duration. Evolution 54, 534-542.
-
(2000)
Evolution
, vol.54
, pp. 534-542
-
-
Gilchrist, A.S.1
Partridge, L.2
-
40
-
-
0030305457
-
The R project for statistical computing
-
(doi:10.2307/1390807)
-
Ihaka, R. & Gentleman, R. 1996 The R project for statistical computing. J. Comp. Graph. Stat. 5, 299-314. (doi:10.2307/1390807)
-
(1996)
J. Comp. Graph. Stat
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
-
41
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
(doi:10.1186/gb-2004-5-10-r80)
-
Gentleman, R. C. et al. 2004 Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80. (doi:10.1186/gb-2004-5-10-r80)
-
(2004)
Genome Biol
, vol.5
-
-
Gentleman, R.C.1
-
42
-
-
39549113189
-
Correcting for sequence biases in present/absent calls
-
(doi:10.1186/gb-2007-8-6-r125)
-
Schuster, E. F., Blanc, E., Partridge, L. & Thornton, J. M. 2007 Correcting for sequence biases in present/absent calls. Genome Biol. 8, R125. (doi:10.1186/gb-2007-8-6-r125)
-
(2007)
Genome Biol
, vol.8
-
-
Schuster, E.F.1
Blanc, E.2
Partridge, L.3
Thornton, J.M.4
-
43
-
-
10844290766
-
A model based background adjustment for oligonucleotide expression arrays
-
Wu, Z., Irizarry, R. A., Gentleman, R., Martinez Murillo, F. & Spencer, F. 2003 A model based background adjustment for oligonucleotide expression arrays. J. Am. Stat. Assoc. 99, 907-917.
-
(2003)
J. Am. Stat. Assoc
, vol.99
, pp. 907-917
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.3
Martinez Murillo, F.4
Spencer, F.5
-
44
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
(doi:10.1093/nar/30.4.e15)
-
Yang, Y. H., Dudoit, S., Luu, P., Lin, D. M., Peng, V., Ngai, J. & Speed, T. P. 2002 Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucl. Acids Res. 30, e15. (doi:10.1093/nar/30.4.e15)
-
(2002)
Nucl. Acids Res
, vol.30
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
45
-
-
0034948896
-
A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inferences of gene changes
-
(doi:10.1093/bioinformatics/17.6.509)
-
Baldi, P. & Long, A. D. 2001 A Bayesian framework for the analysis of microarray expression data: regularized t-test and statistical inferences of gene changes. Bioinformatics 17, 509-519. (doi:10.1093/bioinformatics/17.6.509)
-
(2001)
Bioinformatics
, vol.17
, pp. 509-519
-
-
Baldi, P.1
Long, A.D.2
-
46
-
-
0036020892
-
A direct approach to false discovery rates
-
(doi:10.1111/1467-9868.00346)
-
Storey, J. D. 2002 A direct approach to false discovery rates. J. R. Stat. Soc. 64, 479-498. (doi:10.1111/1467-9868.00346)
-
(2002)
J. R. Stat. Soc
, vol.64
, pp. 479-498
-
-
Storey, J.D.1
-
47
-
-
0345822598
-
The positive false discovery rate: A Bayesian interpretation and the q-value
-
(doi:10.1214/aos/1074290335)
-
Storey, J. D. 2003 The positive false discovery rate: a Bayesian interpretation and the q-value. Ann. Stat. 31, 2013-2035. (doi:10.1214/aos/1074290335)
-
(2003)
Ann. Stat
, vol.31
, pp. 2013-2035
-
-
Storey, J.D.1
-
48
-
-
0042424602
-
Statistical significance for genomewide studies
-
(doi:10.1073/pnas.1530509100)
-
Storey, J. D. & Tibshirani, R. 2003 Statistical significance for genomewide studies. Proc. Natl Acad. Sci. USA 100, 9440-9445. (doi:10.1073/pnas.1530509100)
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
49
-
-
0034069495
-
Gene ontology: Tool for the unification of biology
-
(doi:10.1038/75556)
-
Ashburner, M. et al. 2000 Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25, 25-29. (doi:10.1038/75556)
-
(2000)
The Gene Ontology Consortium. Nat. Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
50
-
-
0037251964
-
The InterPro Database, 2003 brings increased coverage and new features
-
(doi:10.1093/nar/gkg046)
-
Mulder, N. J. et al. 2003 The InterPro Database, 2003 brings increased coverage and new features. Nucl. Acids Res. 31, 315-318. (doi:10.1093/nar/gkg046)
-
(2003)
Nucl. Acids Res
, vol.31
, pp. 315-318
-
-
Mulder, N.J.1
-
51
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
(doi:10.1093/nar/gkm882)
-
Kanehisa, M. et al. 2008 KEGG for linking genomes to life and the environment. Nucl. Acids Res. 36, D480-D484. (doi:10.1093/nar/gkm882)
-
(2008)
Nucl. Acids Res
, vol.36
-
-
Kanehisa, M.1
-
52
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
(doi:10.1093/nar/28.1.27)
-
Kanehisa, M. & Goto, S. 2000 KEGG: kyoto encyclopedia of genes and genomes. Nucl. Acids Res. 28, 27-30. (doi:10.1093/nar/28.1.27)
-
(2000)
Nucl. Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
53
-
-
33644874819
-
From genomics to chemical genomics: New developments in KEGG
-
(doi:10.1093/nar/gkj102)
-
Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K. F., Itoh, M., Kawashima, S., Katayama, T., Araki, M. & Hirakawa, M. 2006 From genomics to chemical genomics: new developments in KEGG. Nucl. Acids Res. 34, D354-D357. (doi:10.1093/nar/gkj102)
-
(2006)
Nucl. Acids Res
, vol.34
-
-
Kanehisa, M.1
Goto, S.2
Hattori, M.3
Aoki-Kinoshita, K.F.4
Itoh, M.5
Kawashima, S.6
Katayama, T.7
Araki, M.8
Hirakawa, M.9
-
54
-
-
58149199579
-
FlyBase: Enhancing Drosophila gene ontology annotations
-
(doi:10.1093/nar/gkn788)
-
Tweedie, S. et al. 2009 FlyBase: enhancing Drosophila gene ontology annotations. Nucl. Acids Res. 37, D555-D559. (doi:10.1093/nar/gkn788)
-
(2009)
Nucl. Acids Res
, vol.37
-
-
Tweedie, S.1
-
55
-
-
3142749712
-
Long-lived Drosophila with overexpressed dFOXO in adult fat body
-
(doi:10.1126/science.1098219)
-
Giannakou, M. E., Goss, M., Junger, M. A., Hafen, E., Leevers, S. J. & Partridge, L. 2004 Long-lived Drosophila with overexpressed dFOXO in adult fat body. Science 305, 361. (doi:10.1126/science.1098219)
-
(2004)
Science
, vol.305
, pp. 361
-
-
Giannakou, M.E.1
Goss, M.2
Junger, M.A.3
Hafen, E.4
Leevers, S.J.5
Partridge, L.6
-
56
-
-
23844551199
-
Stochastic models inspired by hybridization theory for short oligonucleotide arrays
-
(doi:10.1089/cmb.2005.12.882)
-
Wu, Z. & Irizarry, R. A. 2005 Stochastic models inspired by hybridization theory for short oligonucleotide arrays. J. Comput. Biol. 12, 882-893. (doi:10.1089/cmb.2005.12.882)
-
(2005)
J. Comput. Biol
, vol.12
, pp. 882-893
-
-
Wu, Z.1
Irizarry, R.A.2
-
58
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
(doi:10.1093/biostatistics/4.2.249)
-
Irizarry, R. A., Hobbs, B., Collin, F., Beazer-Barclay, Y. D., Antonellis, K. J., Scherf, U. & Speed, T. P. 2003 Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4, 249-264. (doi:10.1093/biostatistics/4.2.249)
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
59
-
-
22544432531
-
Noise-robust soft clustering of gene expression time-coursedata
-
(doi:10.1142/S021972000 5001375)
-
Futschik, M.E. & Carlisle, B. 2005 Noise-robust soft clustering of gene expression time-coursedata. J. Bioinform.Comput. Biol. 3, 965-988. (doi:10.1142/S021972000 5001375)
-
(2005)
J. Bioinform.Comput. Biol
, vol.3
, pp. 965-988
-
-
Futschik, M.E.1
Carlisle, B.2
-
60
-
-
61349177268
-
Mfuzz: A software package for soft clustering of microarray data
-
(doi:10.6026/97320630002005)
-
Kumar, L. & Futschik, M. E. 2007 Mfuzz: a software package for soft clustering of microarray data. Bioinformation 2, 5-7. (doi:10.6026/97320630002005)
-
(2007)
Bioinformation
, vol.2
, pp. 5-7
-
-
Kumar, L.1
Futschik, M.E.2
-
61
-
-
33845624887
-
Microarray validation: Factors influencing correlation between oligonuceotide microarrays and real-time PCR
-
(doi:10.1251/bpo126)
-
Morey, J. S., Ryan, J. C. & Van Dolah, F. M. 2006 Microarray validation: factors influencing correlation between oligonuceotide microarrays and real-time PCR. Biol. Proc. Online 8, 175-193. (doi:10.1251/bpo126)
-
(2006)
Biol. Proc. Online
, vol.8
, pp. 175-193
-
-
Morey, J.S.1
Ryan, J.C.2
van Dolah, F.M.3
-
62
-
-
58149203231
-
InterPro: The integrative protein signature database
-
(doi:10.1093/nar/gkn833)
-
Hunter, S. et al. 2009 InterPro: the integrative protein signature database. Nucl. Acids Res. 37, D224-D228. (doi:10.1093/nar/gkn833)
-
(2009)
Nucl. Acids Res
, vol.37
-
-
Hunter, S.1
-
63
-
-
0037306190
-
Insulin/IGF and target of rapamycin signaling: A TOR de force in growth control
-
(doi:10.1016/S0962-8924(02)00042-9)
-
Oldham, S. & Hafen, E. 2003 Insulin/IGF and target of rapamycin signaling: a TOR de force in growth control. Trends Cell Biol. 13, 79-85. (doi:10.1016/S0962-8924(02)00042-9)
-
(2003)
Trends Cell Biol
, vol.13
, pp. 79-85
-
-
Oldham, S.1
Hafen, E.2
-
64
-
-
84890873409
-
Drosophila photoreceptors and signaling mechanisms
-
(doi:10.3389/neuro.03.002.2009)
-
Katz, B. & Minke, B. 2009 Drosophila photoreceptors and signaling mechanisms. Front. Cell. Neurosci. 3, 2. (doi:10.3389/neuro.03.002.2009)
-
(2009)
Front. Cell. Neurosci
, vol.3
, pp. 2
-
-
Katz, B.1
Minke, B.2
-
65
-
-
49549119383
-
Building up the Drosophila eggshell: First of all the eggshell genes must be transcribed
-
(doi:10.1002/dvdy.21625)
-
Cavaliere, V., Bernardi, F., Romani, P., Duchi, S. & Gargiulo, G. 2008 Building up the Drosophila eggshell: first of all the eggshell genes must be transcribed. Dev. Dyn. 237, 2061-2072. (doi:10.1002/dvdy.21625)
-
(2008)
Dev. Dyn
, vol.237
, pp. 2061-2072
-
-
Cavaliere, V.1
Bernardi, F.2
Romani, P.3
Duchi, S.4
Gargiulo, G.5
-
66
-
-
33645860490
-
Allocrine modulation of feeding behavior by the sex peptide of Drosophila
-
(doi:10.1016/j.cub.2006.02.064)
-
Carvalho, G. B., Kapahi, P., Anderson, D. J. & Benzer, S. 2006 Allocrine modulation of feeding behavior by the sex peptide of Drosophila. Curr. Biol. 16, 692-696. (doi:10.1016/j.cub.2006.02.064)
-
(2006)
Curr. Biol
, vol.16
, pp. 692-696
-
-
Carvalho, G.B.1
Kapahi, P.2
Anderson, D.J.3
Benzer, S.4
-
67
-
-
33947648908
-
A functioning ovary is not required for sex peptide to reduce receptivity to mating in D. melanogaster
-
(doi:10.1016/j.jinsphys. 2006.12.008)
-
Barnes, A. I., Boone, J. M., Partridge, L. & Chapman, T. 2007 A functioning ovary is not required for sex peptide to reduce receptivity to mating in D. melanogaster. J. Insect Physiol. 53, 343-348. (doi:10.1016/j.jinsphys. 2006.12.008)
-
(2007)
J. Insect Physiol
, vol.53
, pp. 343-348
-
-
Barnes, A.I.1
Boone, J.M.2
Partridge, L.3
Chapman, T.4
-
68
-
-
77953868948
-
A Role for S6 Kinase and serotonin in postmating dietary switch and balance of nutrients in D. melanogaster
-
(doi:10.1016/j.cub.2010.04.009)
-
Vargas, M.A., Luo, N.G., Yamaguchi, A. & Kapahi, P. 2010 A Role for S6 Kinase and serotonin in postmating dietary switch and balance of nutrients in D. melanogaster. Curr. Biol. 20, 1006-1011. (doi:10.1016/j.cub.2010.04.009)
-
(2010)
Curr. Biol
, vol.20
, pp. 1006-1011
-
-
Vargas, M.A.1
Luo, N.G.2
Yamaguchi, A.3
Kapahi, P.4
-
69
-
-
33846491681
-
Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis
-
(doi:10.1038/msb4100112)
-
Hooper, S. D., Boué, S., Krause, R., Jensen, L. J., Mason, C. E., Ghanim, M., White, K. P., Furlong, E. M. & Bork, P. 2007 Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Mol. Syst. Biol. 3, 72. (doi:10.1038/msb4100112)
-
(2007)
Mol. Syst. Biol
, vol.3
, pp. 72
-
-
Hooper, S.D.1
Boué, S.2
Krause, R.3
Jensen, L.J.4
Mason, C.E.5
Ghanim, M.6
White, K.P.7
Furlong, E.M.8
Bork, P.9
-
70
-
-
67649416474
-
Gene expression during Drosophila melanogaster egg development before and after reproductive diapause
-
(doi:10. 1186/1471-2164-10-242)
-
Baker, D. A. & Russell, S. 2009 Gene expression during Drosophila melanogaster egg development before and after reproductive diapause. BMC Genomics 10, 242. (doi:10. 1186/1471-2164-10-242)
-
(2009)
BMC Genomics
, vol.10
, pp. 242
-
-
Baker, D.A.1
Russell, S.2
-
71
-
-
33144477557
-
Myc/Max/Mad in invertebrates: The evolution of the max network. Myc/max/mad Transcript
-
(doi:10.1007/3-540-32952-8_9)
-
Gallant, P. 2006 Myc/Max/Mad in invertebrates: the evolution of the max network. Myc/max/mad Transcript. Fact. Network 302, 235-253. (doi:10.1007/3-540-32952-8_9)
-
(2006)
Fact. Network
, vol.302
, pp. 235-253
-
-
Gallant, P.1
-
72
-
-
0029693154
-
Sexpeptide activates juvenile hormone biosynthesis in the Drosophilamelanogaster corpus allatum
-
(doi:10.1002/(SICI)1520-6327(1996)32:3/4,363::AID-ARCH9.3.0.CO;2-T)
-
Moshitzky, P., Fleischmann, I., Chaimov, N., Saudan, P., Klauser, S., Kubli, E. & Applebaum, S. W. 1996 Sexpeptide activates juvenile hormone biosynthesis in the Drosophilamelanogaster corpus allatum. Arch. Insect. Biochem. Physiol. 32, 363-74. (doi:10.1002/(SICI)1520-6327(1996)32:3/4,363::AID-ARCH9.3.0.CO;2-T)
-
(1996)
Arch. Insect. Biochem. Physiol
, vol.32
, pp. 363-374
-
-
Moshitzky, P.1
Fleischmann, I.2
Chaimov, N.3
Saudan, P.4
Klauser, S.5
Kubli, E.6
Applebaum, S.W.7
-
73
-
-
0034939222
-
Increased sexual activity reduces male immune function in Drosophila melanogaster
-
(doi:10.1073/pnas.131216398)
-
McKean, K. A. & Nunney, L. 2001 Increased sexual activity reduces male immune function in Drosophila melanogaster. Proc. Natl Acad. Sci. USA 98, 7904-7909. (doi:10.1073/pnas.131216398)
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 7904-7909
-
-
McKean, K.A.1
Nunney, L.2
-
74
-
-
52949106470
-
Mating induces an immune response and developmental switch in the Drosophila oviduct
-
(doi:10.1073/pnas.0710997105)
-
Kapelnikov, A., Zelinger, E., Gottlieb, Y., Rhrissorrakrai, K., Gunsalus, K. C. & Heifetz, Y. 2008 Mating induces an immune response and developmental switch in the Drosophila oviduct. Proc. Natl Acad. Sci. USA 105, 13912-13917. (doi:10.1073/pnas.0710997105)
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 13912-13917
-
-
Kapelnikov, A.1
Zelinger, E.2
Gottlieb, Y.3
Rhrissorrakrai, K.4
Gunsalus, K.C.5
Heifetz, Y.6
-
75
-
-
33750613164
-
Evolutionary conflicts of interest between males and females
-
(doi:10.1016/j.cub.2006.08.020)
-
Chapman, T. 2006 Evolutionary conflicts of interest between males and females. Curr. Biol. 16, 744-754. (doi:10.1016/j.cub.2006.08.020)
-
(2006)
Curr. Biol
, vol.16
, pp. 744-754
-
-
Chapman, T.1
|