Rapid discrimination of newly isolated Bacillales with industrial applications using Raman spectroscopy

Laser Physics Letters

Volumn 9, Issue 9, 2012, Pages 636-642

  Deng, A H ^a   Sun, Z P ^a,b   Zhang, G Q ^a,b   Wu, J ^a,b   Wen, T Y ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

16S rRNA genes; Bacillales; Multivariate analyses; Phylogenetic analysis; Raman spectroscopy

Indexed keywords

EID: 84866766572     PISSN: 16122011     EISSN: 1612202X     Source Type: Journal    
DOI: 10.7452/lapl.201210052     Document Type: Article

References (27)

1. V. Govindasamy, M. Senthilkumar, V. Magheshwaran, U. Kumar, P. Bose, V. Sharma, and K. Annapurna, in: D.K. Maheshwari (ed.), Plant Growth and Health Promoting Bacteria, Microbiology Monographs, vol. 18 (Springer, 2011), pp. 333-364.
2. F. Kunst, N. Ogasawara, I. Moszer, A.M. Albertini, G. Alloni, V. Azevedo, M.G. Bertero, P. Bessieres, A. Bolotin, S. Borchert, R. Borriss, L. Boursier, A. Brans, M. Braun, S.C. Brignell, S. Bron, S. Brouillet, C.V. Bruschi, B. Caldwell, V. Capuano, N.M. Carter, S.-K. Choi, J.-J. Codani, I.F. Connerton, N.J. Cummings, R.A. Daniel, F. Denizot, K.M. Devine, A. D̈usterḧoft, S.D. Ehrlich, P.T. Emmerson, K.D. Entian, J. Errington, C. Fabret, E. Ferrari, D. Foulger, C. Fritz, M. Fujita, Y. Fujita, S. Fuma, A. Galizzi, N. Galleron, S.-Y. Ghim, P. Glaser, A. Goffeau, E.J. Golightly, G. Grandi, G. Guiseppi, B.J. Guy, K. Haga, J. Haiech, C.R. Harwood, A. H́enaut, H. Hilbert, S. Holsappel, S. Hosono, M.-F. Hullo, M. Itaya, L. Jones, B. Joris, D. Karamata, Y. Kasahara, M. Klaerr-Blanchard, C. Klein, Y. Kobayashi, P. Koetter, G. Koningstein, S. Krogh, M. Kumano, K. Kurita, A. Lapidus, S. Lardinois, J. Lauber, V. Lazarevic, S.-M. Lee, A. Levine, H. Liu, S. Masuda, C. Maüel, C. Ḿedigue, N. Medina, R.P. Mellado, M. Mizuno, D. Moestl, S. Nakai, M. Noback, D. Noone, M. O'Reilly, K. Ogawa, A. Ogiwara, B. Oudega, S.-H. Park, V. Parro, T.M. Pohl, D. Portetelle, S. Porwollik, A. M. Prescott, E. Presecan, P. Pujic, B. Purnelle, G. Rapoport, M. Rey, S. Reynolds, M. Rieger, C. Rivolta, E. Rocha, B. Roche, M. Rose, Y. Sadaie, T. Sato, E. Scanlan, S. Schleich, R. Schroeter, F. Scoffone, J. Sekiguchi, A. Sekowska, S.J. Seror, P. Serror, B.-S. Shin, B. Soldo, A. Sorokin, E. Tacconi, T. Takagi, H. Takahashi, K. Takemaru, M. Takeuchi, A. Tamakoshi, T. Tanaka, P. Terpstra, A. Tognoni, V. Tosato, S. Uchiyama, M. Vandenbol, F. Vannier, A. Vassarotti, A. Viari, R. Wambutt, E. Wedler, H. Wedler, T. Weitzenegger, P. Winters, A. Wipat, H. Yamamoto, K. Yamane, K. Yasumoto, K. Yata, K. Yoshida, H.-F. Yoshikawa, E. Zumstein, H. Yoshikawa, and A. Danchin, Nature 390, 249-256 (1997).
3. I.P. Sarethy, Y. Saxena, A. Kapoor, M. Sharma, S.K. Sharma, V. Gupta, and S. Gupta, J. Ind. Microbiol. Biotechnol. 38, 769-790 (2011).
4. S. Sundararajan, C.N. Kannan, and S. Chittibabu, J. Biosci. Bioeng. 111, 128-133 (2011).
5. S. Stammen, B.K. M̈uller, C. Korneli, R. Biedendieck, M. Gamer, E. Franco-Lara, and D. Jahn, Appl. Environ. Microbiol. 76, 4037-4046 (2010).
6. L.M. Irenge and J.-L. Gala, Appl. Microbiol. Biotechnol. 93, 1411-1422 (2012).
7. M. Wagner, Annu. Rev. Microbiol. 63, 411-429 (2009).
8. W.E. Huang, M.Q. Li, R.M. Jarvis, R. Goodacre, and S.A. Banwart, Adv. Appl. Microbiol. 70, 153-186 (2010).
9. W.E. Huang, R.I. Griffiths, I.P. Thompson, M.J. Bailey, and A.S. Whiteley, Anal. Chem. 76, 4452-4458 (2004).
10. O. Samek, J.F.M. Al-Marashi, and H.H. Telle, Laser Phys. Lett. 7, 378-383 (2010).
11. O. Samek, H.H. Telle, L.G. Harris, M. Bloomfield, and D. Mack, Laser Phys. Lett. 5, 465-470 (2008).
12. C. Xie, J. Mace, M.A. Dinno, Y.Q. Li, W. Tang, R.J. Newton, and P.J. Gemperline, Anal. Chem. 77, 4390-4397 (2005).
13. R.M. Jarvis and R. Goodacre, Anal. Chem. 76, 40-47 (2004).
14. D. Hutsebaut, J. Vandroemme, J. Heyrman, P. Dawyndt, P. Vandenabeele, L. Moens, and P. de Vos, Syst. Appl. Microbiol. 29, 650-660 (2006).
15. D. Hutsebaut, K. Maquelin, P. De Vos, P. Vandenabeele, L. Moens, and G.J. Puppels, Anal. Chem. 76, 6274-6281 (2004).
16. D.J. Lane, in: E. Stackebrandt and M. Goodfellow. (eds.), (Wiley, New York, 1991), pp. 115-175.
17. T. Huber, G. Faulkner, and P. Hugenholtz, Bioinform. 20, 2317-2319 (2004).
18. D.A. Benson, I. Karsch-Mizrachi, D.J. Lipman, J. Ostell, and D.L. Wheeler, Nucleic Acids Res. 33, D34-D38 (2005).
19. R.C. Edgar, Nucleic Acids Res. 32, 1792-1797 (2004).
20. M. Nei and S. Kumar, Molecular Evolution and Phylogenetics (Oxford University Press, New York, 2000).
21. K. Tamura, D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar, Mol. Biol. Evol. 28, 2731-2739 (2011).
22. K. Maquelin, L. Dijkshoorn, T.J.K. van der Reijden, and G.J. Puppels, J. Microbiol. Methods 64, 126-131 (2006).
23. R.M. Jarvis, D. Broadhurst, H. Johnson, N.M. O'Boyle, and R. Goodacre, Bioinform. 22, 2565-2566 (2006).
24. W. Ludwig, O. Strunk, S. Klugbauer, N. Klugbauer, M. Weizenegger, J. Neumaier, M. Bachleitner, and K.H. Schleifer, Electrophoresis. 19, 554-568 (1998).
25. J. De Gelder, K. De Gussem, P. Vandenabeele, and L. Moens, J. Raman Spectrosc. 38, 1133-1147 (2007).
26. E.K. Hall, G.A. Singer, M. P̈olzl, I. Ḧammerle, C. Schwarz, H. Daims, F. Maixner, and T.J. Battin, ISME J. 5, 196-208 (2011).
27. W.E. Huang, K. Stoecker, R. Griffiths, L. Newbold, H. Daims, A.S. Whiteley, and M. Wagner, Environ. Microbiol. 9, 1878-1889 (2007).