Indigenous microbiota and association with the host

Microbiology and Aging: Clinical Manifestations

Volumn , Issue , 2009, Pages 15-37

  Thomas, John G ^a   Percival, Steven L ^a  

^a WEST VIRGINIA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84866524319     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-59745-327-1_2     Document Type: Chapter

References (83)

1. Xu J, Gordon JI. Inaugural Article: Honor thy symbionts. Proc Natl Acad Sci USA 2003;100:10452-10459.
2. Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL. An immunomodulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 2005;122:107-118.
3. Rakoff-Nahoum S, Paglino J, Eslami-Varzaneh F, Edberg S, Medzhitov R. Recognition of commensal microflora by Toll-like receptors is required for intestinal homeostasis. Cell 2004;118:229-241.
4. Weinstein PD, Cebra JJ. The preference for switching to IgA expression by Peyer's patch germinal center B cells is likely due to the intrinsic influence of their microenvironment. J Immunol 1991;147:4126-4135.
5. Cebra JJ. Influences of microbiota on intestinal immune system development. Am J Clin Nutr 1999;69:1046S-1051S.
6. Shanahan F. The host-microbe interface within the gut. Best Pract Res Clin Gastroenterol 2002;16:915-931.
7. Backhed F, Ding H, Wang T, Hooper LV, Koh GY, Nagy A, Semenkovich CF, Gordon JI. The gut microbiota as an environmental factor that regulates fat storage. Proc Natl Acad Sci USA 2004;101:15718-15723.
8. Ley RE, Backhed F, Turnbaugh P, Lozupone CA, Knight RD, Gordon JI. Obesity alters gut microbial ecology. Proc Natl Acad Sci USA 2005;102:11070-11075.
9. Dubos R, Schaedler RW, Costello R, Hoet P. Indigenous, normal, and autochthonous flora of the gastrointestinal tract. J Exp Med 1965;1(122):67-76.
10. Tlaskalová-Hogenová H, Stepánková R, Hudcovic T, Tuckov L, Cukrowska B, Lodinová-Zádńiková R, Kozáková H, Rossmann P, Sokol D, Funda DP, Borovská D, Reháková Z, Sinkora J, Hofman J, Drastich P, Kokesová A. Commensal bacteria (normal microflora), mucosal immunity and chronic inflammatory and autoimmune diseases. Immunol Lett 2004;93(2/3):97-108.
11. Blaser MJ. Host-Pathogen Interactions: Defining the Concepts of Pathogenicity, Virulence, Colonization, Commensalisms, and Symbiosis, Ending the War Metaphor: The Changing Agenda for Unravelling the Host-Microbe Relationship, Institute of Medicine, Forum on Microbial Threats, The National Academy Press, Washington, DC. 2005, pp. 115-130.
12. Nicholson JK, Holmes E, Wilson ID. Gut microorgaism, mammalian metablolism and personalized health care. Nat Rev Microbiol 2005;3:1-8.
13. Wilson M. Microbial Inhabitants of Humans: Their Ecology and Role in Health and Disease. Cambridge University Press, UK. 2004.
14. Tannock GW. Normal Flora: An Introduction to Microbes Inhabiting the Human Body. Chapman & Hall, London. 1995.
15. Miller WD. The Micro-organisms of the Human Mouth. S. S. White Dental MFGC., Philadelphia. 1980.
16. Socransky SS, Manganiello SD. The oral microbiota of man from birth to senility. J Periodontol 1971;42:485-496.
17. Tagg JR, Pybus V, Phillips LV. Application of inhibitor typing in a study of transmission and retention in the human mouth of the bacterium Stretococcus salivarius. Arch Oral Biol 1983;28:911-915.
18. Carlsson J, Grahnén H, Jonsson G. Lactobacilli and streptococci in the mouth of children. Caries Res 1975;9(5):333-339.
19. Ikeda T, Sandham HJ. Prevalence of Streptococcus mutans on various tooth surfaces in Negro children. Arch Oral Biol 1971;16:1237-1240.
20. Frisken KW, Tagg JR, Laws AJ, Orr MB. Suspected periodontopathic microorganisms and their oral habitat in young children. Oral Microbiol Immunol 1987;2:60-64.
21. Delaney JE, Ratzan SK, Kornman KS. Subgingival microbiota associated with puberty: studies of pre-, circum- and postpubertal human females. Pediatr Dent 1986;8:268275.
22. Wojcicki CJ, Harper DS, Robinson PJ. Differences in periodontal disease-associated microorganisms of subgingival plaque in prepubertal, pubertal and postpubertal children. J Periodontol 1987;58:219-223.
23. Fujimoto C, Maeda H, Kokeguchi S, Takashiba S, Nishimura F, Arai H, Fukui K, Murayama Y. Application of denaturing gradient gel electrophoresis (DGGE) to the analysis of microbial communities of subgingival plaque. J Periodontal Res 2003;38:440-445.
24. Emilson CG, Krasse B. Support for and implications of the specific plaque hypothesis. Scan J Dent Res 1985;93:96-104.
25. Theilade E, Wright WH, Jensen S, Loe H. Experimental gingivitis in man. II. A longitudinal clinical and bacteriological investigation. J Periodontal Res 1966;1:1-13.
26. Roberts AK, Van-Bierevliet J-P, Harzer G. Factors of human milk influencing the bacterial flora of infant faeces. In Composition and Physiological Properties of Human Milk (Schraub J, ed.), Elsevier, Amsterdam. 1985, p. 259.
27. Pei Z, Bini EJ, Yang L, Zhou M, Francois F, Blaser MJ. Bacterial biota in the human distal oesophagus. Proc Natl Acad Sci USA 2004;101:4250-4255.
28. Finegold SM. Normal indigenous intestinal flora. In Human Intestinal Microflora in Health and Disease (Hentges DJ, ed.), Academic Press, New York. 1983, pp. 3-31.
29. Borriello SP. Microbial flora of the gastrointestinal tract. In Microbial Metabolism in the Digestive Tract (Hill MJ, ed.), CRC Press, Boca Raton, FL. 1986.
30. Drasar BS, Shiner M, McLeod G. Studies on the intestinal flora. I. The bacterial flora of the gastrointestinal tract in healthy and achlorhydric persons. Gastroenterology 1969;56:71-79.
31. Drasar BS, Roberts AK. Control of the large bowel microflora. In Human Microbial Ecology (Hill MJ and Marsh PD, eds), CRC Press, Boca Raton, FL. 1990, pp. 89-110.
32. Hebuterne X. Gut changes attributed to aging: effects on intestinal microflora. Curr Opin Clin Nutr Metab Care 2003;6:49-54.
33. Bourlioux P, Koletzko B, Guarner F, Braesco V. The intestine and its microflora are partners for the protection of the host: report on the Danone Symposium "The Intelligent Intestine", held in Paris, June 14, 2002. Am J Clin Nutr 2003;78:675-683.
34. Penders J, Thijs C, Van Den Brandt PA, Kummeling I, Snijders B, Stelma F, Adams H, Van Ree R, Stobberingh EE. Gut microbiota composition and development of atopic manifestations in infancy: the KOALA Birth Cohort Study. Gut 2007;56(5):661-667.
35. Cooperstock MS, Zedd AA. Intestinal flora of infants. In Human Intestinal Microflora in Health and Disease (Hentges DJ, ed.), Academic Press, New York. 1983, p. 79.
36. Roberts AK. The development of the infant faecal flora, Ph. D. Thesis, CNAA. 1988.
37. Jatsyk GV, Kuvaeva IB, Gribakin SG. Immunological protection of the neonatal gastrointestinal tract: the importance of breast feeding. Acta Paediatr Scand 1985;74:246-249.
38. Bullen CL, Tearle PV, Willis AT. Bifidiobacteria in the intestinal tract of infants: an in vivo study. J Med Microbiol 1976;9:325-333.
39. Stark PL, Lee A. The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life. J Med Microbiol 1982;15:189-203.
40. Harmsen HJ, Wildeboer-Veloo AC, Raangs GC, Wagendorp AA, Klijn N, Bindels JG, Welling GW. Analysis of intestinal flora development in breast-fed and formula-fed infants using molecular identification and detection methods. J Pediatr Gastroenterol Nutr 2000;30:61-67.
41. Mackie RI, Sghir A, Gaskins HR. Developmental microbial ecology of the neonatal gastrointestinal tract. Am J Clin Nutr 1999;69:1035-1045.
42. Rotimi VO, Duerden BI. The development of the bacterial flora in normal neonates. J Med Microbiol 1981;14:51-62.
43. Andrieux C, Membré JM, Cayuela C, Antoine JM. Metabolic characteristics of the faecal microflora in humans from three age groups. Scand J Gastroenterol 2002;37(7):792-798.
44. Rinne M, Kalliomäki M, Salminen S, Isolauri E. Probiotic intervention in the first months of life: short-term effects on gastrointestinal symptoms and long-term effects on gut microbiota. J Pediatr Gastroenterol Nutr 2006;43(2):200-205.
45. Zhang T, Breitbart M, Lee WH, Run JQ, Wei CL, Soh SWL, Hibberd ML, Liu ET, Rohwer F, Ruan YJ. RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol 2006;4:108-118.
46. Backhed F, Levy RE, Sonnenburg JL, Peterson DA, Gordon JI. Host-bacterial mutualism in the human intestine. Science 2005;307:1915-1920.
47. Blaut M, Collins MD, Welling GW, Dore J, Van Loo J, De Vos W. Molecular biological methods for studying the gut microbiota: The EU human gut flora project. Br J Nutr 2002;87(2):S203-S211.
48. Rajilic-Stojanovic M. Diversity of the human gastrointestinal microbiota: novel perspectives from high throughput analyses, Ph. D. Thesis, Wageningen University, Wageningen, the Netherlands. 2007.
49. Noverr MC, Huffnagle GB. Does the microbiota regulate immune responses outside the gut? Trends Microbiol 2004;12:562-568.
50. Philips ML. Interdomain interactions: dissecting animal-bacterial symbioses. Bioscience 2006;56:376-381.
51. Suau A, Bonnet R, Sutren M, Godon JJ, Gibson GR, Collins MD, Dore J. Direct analysis of genes encoding 16S rDNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 1999;65:4799-4807.
52. Moore WEC, Cato EP, Holdeman LV. Anaerobic bacteria of the gastrointestinal flora and their occurrence in clinical infections. J Infect Dis 1969;119:641-649.
53. Hopkins MJ, MacFarlane GT. Changes in predominant bacterial populations in human faeces with age and with Clostridium difficile infection. J Med Microbiol 2002;51:448-454.
54. Bartosch S, Fite A, Macfarlane GT, McMurdo ME. Characterization of bacterial communities in feces from healthy elderly volunteers and hospitalized elderly patients by using real-time PCR and effects of antibiotic treatment on the fecal microbiota. Appl Environ Microbiol 2004;70(6):3575-3581.
55. Woodmansey EJ, McMurdo ME, Macfarlane GT, Macfarlane S. Comparison of compositions and metabolic activities of fecal microbiotas in young adults and in antibiotic-treated and nonantibiotic-treated elderly subjects. Appl Environ Microbiol 2004;70(10):6113-6122.
56. Hopkins MJ, Sharp R, Macfarlane GT. Variation in human intestinal microbiota with age. Dig Liver Dis 2002;34:S12-S18.
57. Severijnen AJ, Van Kleef R, Hazenberg MP, Van De Merwe JP. Cell wall fragments from major residents of the human intestinal flora induce chronic arthritis in rats. J Rheumatol 1989;16(8):1061-1068.
58. Mitsuoka T, Hayakawa K, Kimura N. The faecal flora of man. II. The composition of bifidobacterium flora of different age groups (author's transl). Zentralbl Bakteriol Orig A 1974;226(4):469-478.
59. He F, Ouwehand AC, Isolauri E, Hashimoto H, Benno Y, Salminen S. Comparison of mucosal adhesion and species identification of bifidobacteria isolated from healthy and allergic infants. FEMS Immunol Med Microbiol 2001;30(1):43-47.
60. He F, Ouwehand AC, Isolauri E, Hosoda M, Benno Y, Salminen S. Differences in composition and mucosal adhesion of bifidobacteria isolated from healthy adults and healthy seniors. Curr Microbiol 2001;43(5):351-354.
61. Long SS. Capsules, clones and curious events: pneumococcus under fire from polysaccharide conjugate vaccine. Clin Infect Dis 2005;41(1):30-34.
62. Hunter CA Jr, Long KR. A study of the microbiological flora of the vagina. Am J Obstet Gynecol 1958;75(4):865-871.
63. Levison ME, Corman LC, Carrington ER, Kaye D. Quantitative microflora of the vagina. Am J Obstet Gynecol 1977;127:80-85.
64. Cruickshank R, Sharman A. The biology of the vagina in the human subject. II. The bacterial flora and secretion of the vagina at various age periods and their relation to glycogen in the vaginal epithelium. J Obstet Gynaecol Br Emp 1936;32:208-212.
65. Armstrong RA. The microbiology of the eye. Ophthalmic Physiol Opt 2000;20:29-41.
66. Wilcox M, Stapleton F. Occular bacteriology. Med Microbiol Rev 1996;7:123-131.
67. Ramachandran L, Sharma S, Sankaridurg PR, Vajdic CM, Chuck JA, Holden BA, Sweeney DF, Rao GN. Examination of the conjunctival microbiota after 8 hours of eye closure. CLAO J 1995;21:195-199.
68. Kirkwood BJ. Normal flora of the external eye. Insight 2007;32(1):12-13.
69. Carter JA, Neville BG, Newton CR. Neurocognitive impairment following acquired central nervous system infections in childhood; a systematic review. Brain Res Brain Res Rev 2003;43:57-69.
70. Hosoglu S, Geyik MF, Balik I, Aygen B, Erol S, Aygencel TG, Mert A, Saltoglu N, Dokmetas I, Felek S, Sunbul M, Irmak H, Aydin K, Kokoglu OF, Ucmak H, Altindis M, Loeb M. Predictors of outcome in patients with tuberculous meningitis. Int J Tuberc Lung Dis 2002;6(1):64-70.
71. Haughey NJ, Mattson MP. Calcium dysregulation and neuronal apoptosis by the HIV-1 proteins Tat and gp120. J Acquir Immune Defic Syndr 2002;31(2):S55-S61.
72. Eikelenboom P, Bate C, Van Gool WA, Hoozemans JJ, Rozemuller JM, Veerhuis R, Williams A. Neuroinflammation in Alzheimer's disease and prion disease. Glia 2002;40(2):232-239.
73. Martyn CN. Infection in childhood and neurological diseases in adult life. Br Med Bull 1997;53:24-39.
74. Kristensson K, Dastur DK, Manghani DK, Tsiang H, Bentivoglio M. Rabies: interactions between neurons and viruses. A review of the history of Negri inclusion bodies. Neuropathol Appl Neurobiol 1996;22:179-187.
75. Griffin DE. A review of alphavirus replication in neurons. Neurosci Biobehav Rev 1998;22:721-723.
76. Schneider-Schaulies J, Ter Meulen V, Schneider-Schaulies S. Measles virus interactions with cellular receptors: consequences for viral pathogenesis. J Neurovirol 2001;7:391-399.
77. Mettenleiter TC. Pathogenesis of neurotropic herpesviruses: role of viral glycoproteins in neuroinvasion and transneuronal spread. Virus Res 2003;92:197-206.
78. Steiner I, Nisipianu P, Wirguin I. Infection and etiology and pathogenesis of multiple sclerosis. Curr Neurol Neurosci Rep 2001;1:271-276.
79. Labetoulle M, Kucera P, Ugolini G, Lafay F, Frau E, Offret H, Flamand A. Neuronal pathways for the propagation of herpes simplex virus type 1 from one retina to the other in a murine model. J Gen Virol 2000;81:1201-1210.
80. McFarland LV. Normalflora: diversity and functions. Microb Ecol Health Dis 2000;12:193-207.
81. Westerbeek EA, Van Den Berg A, Lafeber HN, Knol J, Fetter WP, Van Elburg RM. The intestinal bacterial colonisation in preterm infants: a review of the literature. Clin Nutr 2006;25(3):361-368.
82. Stappenbeck TS, Hooper LV, Gordon JI. Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells. Proc Natl Acad Sci USA 2002;99:15451-15455.
83. Alekshun MN, Levy SB. Commensals upon us. Biochem Pharmacol 2006;71:893-900.