Identification and genomovar assignation of clinical strains of Pseudomonas stutzeri

European Journal of Clinical Microbiology and Infectious Diseases

Volumn 31, Issue 9, 2012, Pages 2133-2139

  Scotta, C ^a   Mulet, M ^a   Sanchez D ^a   Bennasar, A ^a,d   Garcia Valdes E ^a,e   Lalucat, J ^a,e   Gomila, M ^b   Ramirez A ^c   Holmes, B ^f  

^a UNIVERSITAT DE LES ILLES BALEARS   (Spain)

^b HOSPITAL SON LLÀTZER   (Spain)

^c HOSPITAL UNIVERSITARIO SON ESPASES   (Spain)

^d Instituto Universitario de Investigacion en Ciencias de la Salud IUNICS   (Spain)

^e INSTITUTO MEDITERRÁNEO DE ESTUDIOS AVANZADOS   (Spain)

^f PUBLIC HEALTH ENGLAND   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; PSEUDOMONAS STUTZERI; RPOD GENE;

BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA-DIRECTED RNA POLYMERASES; GENETIC VARIATION; GENOTYPE; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; MOLECULAR TYPING; PHYLOGENY; PSEUDOMONAS INFECTIONS; PSEUDOMONAS STUTZERI; SEQUENCE ANALYSIS, DNA;

EID: 84866433482     PISSN: 09349723     EISSN: 14354373     Source Type: Journal    
DOI: 10.1007/s10096-012-1547-4     Document Type: Article

References (27)

1. Bennasar A, Guasp C, Lalucat J (1998) Molecular methods for the detection and identification of Pseudomonas stutzeri in pure culture and environmental samples. Microb Ecol 35:22-33
2. Bennasar A, Mulet M, Lalucat J, García-Valdés E (2010) PseudoMLSA: a database for multigenic sequence analysis of Pseudomonas species. BMC Microbiol 10:118-124
3. Bosshard PP, Zbinden R, Abels S, Böddinghaus B, Altwegg M, Böttger EC (2006) 16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory. J Clin Microbiol 44:1359-1366
4. Carvalho-Assef AP, Gomes MZR, Silva ARA, Werneck L, Rodrigues CAS, Souza MJ, Asensi MD (2010) IMP-16 in Pseudomonas putida and Pseudomonas stutzeri: potential reservoirs of multidrug resistance. J Med Microbiol 59:1130-1131
5. Cladera AM, Bennasar A, Barceló M, Lalucat J, García- Valdés E (2004) Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species. J Bacteriol 186:5239-5248
6. García-Valdés E, Mulet M, Lalucat J (2010) Insights into the life styles of Pseudomonas stutzeri. In: Ramos JL, Filloux A (eds) Pseudomonas. Volume 6: molecular microbiology, infection and biodiversity, vol 6. Springer Press, New York, pp 177-198
7. Gavini F, Holmes B, Izard D, Beji A, Bernigaud A, Jakubczak E (1989) Numerical taxonomy of Pseudomonas alcaligenes, P. pseudoalcaligenes, P. mendocina, P. stutzeri, and related bacteria. Int J Syst Bacteriol 39:135-144
8. Grimaldi D, Podglajen I, Aubert A, Buu-Hoï A, Diebold B, Mainardi JL (2009) Case of indolent endocarditis due to Pseudomonas stutzeri with genetic evidence of relapse after 4 years. J Clin Microbiol 47:503-504
9. Holmes B (1986) Identification and distribution of Pseudomonas stutzeri in clinical material. J Appl Bacteriol 60:401-411
10. Köse M, Öztürk M, Kuyucu T, Güne? T, Akçaku? M, Sümerkan B (2004) Community-acquired pneumonia and empyema caused by Pseudomonas stutzeri: a case report. Turk J Pediatr 46:177-178
11. Lalucat J, Bennasar A, Bosch R, García-Valdés E, Palleroni NJ (2006) Biology of Pseudomonas stutzeri. Microbiol Mol Biol Rev 70:510-547
12. Millar BC, Xu J, Moore JE (2007) Molecular diagnostics of medically important bacterial infections. Curr Issues Mol Biol 9:21-39
13. Mulet M, Gomila M, Gruffaz C, Meyer JM, Palleroni NJ, Lalucat J, García-Valdés E (2008) Phylogenetic analysis and siderotyping as useful tools in the taxonomy of Pseudomonas stutzeri: description of a novel genomovar. Int J Syst Evol Microbiol 58:2309-2315
14. Mulet M, Lalucat J, García-Valdés E (2010) DNA sequence-based analysis of the Pseudomonas species. Environ Microbiol 12:1513-1530
15. Mulet M, David Z, Nogales B, Bosch R, Lalucat J, García- Valdés E (2011) Pseudomonas diversity in crude-oil-contaminated intertidal sand samples obtained after the Prestige oil spill. Appl Environ Microbiol 77:1076-1085
16. O'Hara CM, Westbrook GL, Miller JM (1997) Evaluation of Vitek GNI+ and Becton Dickinson Microbiology Systems Crystal E/NF identification systems for identification of members of the family Enterobacteriaceae and other Gram-negative, glucose-fermenting and non-glucose-fermenting bacilli. J Clin Microbiol 35:3269-3273
17. Poirel L, Rodríguez-Martínez JM, Al Naiemi N, Debets-Ossenkopp YJ, Nordmann P (2010) Characterization of DIM-1, an integron-encoded metallo-?-lactamase from a Pseudomonas stutzeri clinical isolate in the Netherlands. Antimicrob Agents Chemother 54:2420-2424
18. Roselló R, García-Valdés E, Lalucat J, Ursing J (1991) Genotypic and phenotypic diversity of Pseudomonas stutzeri. Syst Appl Microbiol 14:150-157
19. Roselló-Mora RA, Lalucat J, Dott W, Kämpfer P (1994) Biochemical and chemotaxonomic characterization of Pseudomonas stutzeri genomovars. J Appl Microbiol 76:226-233
20. Sader HS, Jones RN (2005) Antimicrobial susceptibility of uncommonly isolated non-enteric Gram-negative bacilli. Int J Antimicrob Agents 25:95-109
21. Sikorski J, Graupner S, Lorenz MG, Wackernagel W (1998) Natural genetic transformation of Pseudomonas stutzeri in a non-sterile soil. Microbiology 144:569-576
22. Soler L, Marco F, Vila J, Chacón MR, Guarro J, Figueras MJ (2003) Evaluation of two miniaturized systems, MicroScan W/A and BBL Crystal E/NF, for identification of clinical isolates of Aeromonas spp. J Clin Microbiol 41:5732-5734
23. Stanier RY, Palleroni NJ, Doudoroff M (1966) The aerobic pseudomonads: a taxonomic study. J Gen Microbiol 43:159-271
24. Wellinghausen N, Köthe J, Wirths B, Sigge A, Poppert S (2005) Superiority of molecular techniques for identification of gramnegative, oxidase-positive rods, including morphologically nontypical Pseudomonas aeruginosa, from patients with cystic fibrosis. J Clin Microbiol 43:4070-4075
25. Wilson K (1997) Preparation of genomic DNA from bacteria. Curr Protoc Mol Biol. Chapter 2, 2.4.1-2.4.2
26. Yamamoto S, Kasai H, Arnold DL, Jackson RW, Vivian A, Harayama S (2000) Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146:2385-2394
27. Yan JJ, Hsueh PR, Ko WC, Luh KT, Tsai SH, Wu HM, Wu JJ (2001) Metallo-?-Lactamases in clinical Pseudomonas isolates in Taiwan and identification of VIM-3, a novel variant of the VIM-2 enzyme. Antimicrob Agents Chemother 45:2224-2228