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Volumn 58, Issue 10, 2008, Pages 2309-2315

Phylogenetic analysis and siderotyping as useful tools in the taxonomy of Pseudomonas stutzert: Description of a novel genomovar

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE (ATP HYDROLYSING) B; GENE PRODUCT; HYDROCARBON; PROTEIN RPOD; RIBOSOME RNA; UNCLASSIFIED DRUG;

EID: 55849135185     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65797-0     Document Type: Article
Times cited : (42)

References (29)
  • 1
    • 3843102542 scopus 로고    scopus 로고
    • Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species
    • Cladera, A. M., Bennasar, A., Barceló, M., La̧lucat, J. & García-Valdés, E. (2004). Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species. J Bacteriol 186, 5239-5248.
    • (2004) J Bacteriol , vol.186 , pp. 5239-5248
    • Cladera, A.M.1    Bennasar, A.2    Barceló, M.3    La̧lucat, J.4    García-Valdés, E.5
  • 3
    • 55849083996 scopus 로고    scopus 로고
    • Felsenstein, J, 1989, PHYLIP, phylogeny inference package version 3.2, Cladistics 5, 164-166
    • Felsenstein, J. (1989). PHYLIP - phylogeny inference package (version 3.2). Cladistics 5, 164-166.
  • 6
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Edited by H. N. Munro. New York: Academic Press
    • Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 8
    • 85010439719 scopus 로고
    • A procedure for the isolation of deoxyribonucleic acid from microorganisms
    • Marmur, J. (1961). A procedure for the isolation of deoxyribonucleic acid from microorganisms. J Mol Biol 3, 208-218.
    • (1961) J Mol Biol , vol.3 , pp. 208-218
    • Marmur, J.1
  • 9
    • 0031740750 scopus 로고    scopus 로고
    • Molecular genetic analysis of phosphite and hypophosphite oxidation by Pseudomonas stutzeri WM88
    • Metcalf, W. W. & Wolfe, R. (1998). Molecular genetic analysis of phosphite and hypophosphite oxidation by Pseudomonas stutzeri WM88. J Bacteriol 180, 5547-5558.
    • (1998) J Bacteriol , vol.180 , pp. 5547-5558
    • Metcalf, W.W.1    Wolfe, R.2
  • 10
    • 55849089693 scopus 로고    scopus 로고
    • Meyer, J. M. (2007). Siderotyping and bacterial taxonomy: a siderophore bank for a rapid identification at the species level of fluorescent and non-fluorescent Pseudomonas. In Soil Biology, 12, Microbial Siderophores, pp. 43-66. Edited by A. Varma & S. B. Chincholkar. Berlin & Heidelberg: Springer.
    • Meyer, J. M. (2007). Siderotyping and bacterial taxonomy: a siderophore bank for a rapid identification at the species level of fluorescent and non-fluorescent Pseudomonas. In Soil Biology, vol. 12, Microbial Siderophores, pp. 43-66. Edited by A. Varma & S. B. Chincholkar. Berlin & Heidelberg: Springer.
  • 11
    • 0031026355 scopus 로고    scopus 로고
    • Use of siderophores to type Pseudomonas: The three Pseudomonas aeruginosa pyoverdine systems
    • Meyer, J. M., Stinzi, A., de Vos, D., Cornelis, P., Tappe, R., Taraz, K. & Budzikiewicz, H. (1997). Use of siderophores to type Pseudomonas: the three Pseudomonas aeruginosa pyoverdine systems. Microbiology 143, 35-43.
    • (1997) Microbiology , vol.143 , pp. 35-43
    • Meyer, J.M.1    Stinzi, A.2    de Vos, D.3    Cornelis, P.4    Tappe, R.5    Taraz, K.6    Budzikiewicz, H.7
  • 13
    • 36549004063 scopus 로고    scopus 로고
    • Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida
    • Meyer, J. M., Gruffaz, G., Tulkki, T. & Izard, D. (2007). Taxonomic heterogeneity, as shown by siderotyping, of strains primarily identified as Pseudomonas putida. Int J Syst Evol Microbiol 57, 2543-2556.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2543-2556
    • Meyer, J.M.1    Gruffaz, G.2    Tulkki, T.3    Izard, D.4
  • 14
    • 0002972659 scopus 로고
    • Assay for β-galactosidase
    • Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
    • Miller, J. H. (1972). Assay for β-galactosidase. In Experiments in Molecular Genetics, pp. 352-355. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
    • (1972) Experiments in Molecular Genetics , pp. 352-355
    • Miller, J.H.1
  • 15
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: An application to display phylogenetic trees on personal computers
    • Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 16
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D. & Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 19
    • 0030464978 scopus 로고    scopus 로고
    • Strain JM300 represents a new genomovar within Pseudomonas stutzeri
    • Rosselló-Mora, R. A., Lalucat, J. & Moore, E. R. B. (1996). Strain JM300 represents a new genomovar within Pseudomonas stutzeri. Syst Appl Microbiol 19, 596-599.
    • (1996) Syst Appl Microbiol , vol.19 , pp. 596-599
    • Rosselló-Mora, R.A.1    Lalucat, J.2    Moore, E.R.B.3
  • 20
    • 0023127806 scopus 로고
    • Universal chemical assay for the detection and determination of siderophores
    • Schwyn, B. & Neilands, J. B. (1987). Universal chemical assay for the detection and determination of siderophores. Anal Biochem 160, 47-56.
    • (1987) Anal Biochem , vol.160 , pp. 47-56
    • Schwyn, B.1    Neilands, J.B.2
  • 22
    • 26244452974 scopus 로고    scopus 로고
    • Genomovars 11 to 18 of Pseudomonas stutzeri identified among isolates from soil and marine sediment
    • Sikorski, J., Lalucat, J. & Wackernagel, S. (2005). Genomovars 11 to 18 of Pseudomonas stutzeri identified among isolates from soil and marine sediment. Int J Syst Evol Microbiol 55, 1767-1770.
    • (2005) Int J Syst Evol Microbiol , vol.55 , pp. 1767-1770
    • Sikorski, J.1    Lalucat, J.2    Wackernagel, S.3
  • 23
    • 0033857287 scopus 로고    scopus 로고
    • Isolation and characterization of diverse halobenzoate-degrading denitrifying bacteria from soils and sediments
    • Song, B., Palleroni, N. J. & Häggblom, M. (2000). Isolation and characterization of diverse halobenzoate-degrading denitrifying bacteria from soils and sediments. Appl Environ Microbiol 66, 3446-3453.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 3446-3453
    • Song, B.1    Palleroni, N.J.2    Häggblom, M.3
  • 25
    • 0031574072 scopus 로고    scopus 로고
    • CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 27
    • 0033764790 scopus 로고    scopus 로고
    • Phylogeny of the genus Pseudomonas: Intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes
    • Yamamoto, S., Ksai, H., Arnold, D. L., Jackson, R. W., Vivian, A. & Harayama, S. (2000). Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology 146, 2385-2394.
    • (2000) Microbiology , vol.146 , pp. 2385-2394
    • Yamamoto, S.1    Ksai, H.2    Arnold, D.L.3    Jackson, R.W.4    Vivian, A.5    Harayama, S.6
  • 29
    • 0345628032 scopus 로고    scopus 로고
    • Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov
    • Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.
    • (1998) Int J Syst Bacteriol , vol.48 , pp. 179-186
    • Ziemke, F.1    Höfle, M.G.2    Lalucat, J.3    Rosselló-Mora, R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.