메뉴 건너뛰기




Volumn 35, Issue 1, 1998, Pages 22-33

Molecular methods for the detection and identification of Pseudomonas stutzeri in pure culture and environmental samples

Author keywords

[No Author keywords available]

Indexed keywords

PSEUDOMONAS STUTZERI;

EID: 0031972870     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002489900057     Document Type: Article
Times cited : (35)

References (41)
  • 2
    • 0030474942 scopus 로고    scopus 로고
    • rRNA-targeted oligonucleotide probes for the identification of genuine and former Pseudomonads
    • Amann R, Ludwig W, Schulze R, Spring S, Moore E, Schleifer K-H (1996) rRNA-targeted oligonucleotide probes for the identification of genuine and former Pseudomonads. Syst Appl Microbiol 19:501-509
    • (1996) Syst Appl Microbiol , vol.19 , pp. 501-509
    • Amann, R.1    Ludwig, W.2    Schulze, R.3    Spring, S.4    Moore, E.5    Schleifer, K.-H.6
  • 4
    • 0001877577 scopus 로고
    • Improvements in the taxonomy of Flavobacterium by DNA:rRNA hybridizations
    • Reichenbach, Weeks (eds) Verlag Chemie, Weiheim
    • Bawens M, De Ley J (1981) Improvements in the taxonomy of Flavobacterium by DNA:rRNA hybridizations. In: Reichenbach, Weeks (eds) The Flavobacterium-Cytophaga group. Verlag Chemie, Weiheim, pp 27-31
    • (1981) The Flavobacterium-Cytophaga Group , pp. 27-31
    • Bawens, M.1    De Ley, J.2
  • 5
    • 0030051875 scopus 로고    scopus 로고
    • 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov
    • Bennasar A, Rosselló-Mora R, Lalucat J, Moore ERB (1996) 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. Int J Syst Bacteriol 46:200-205
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 200-205
    • Bennasar, A.1    Rosselló-Mora, R.2    Lalucat, J.3    Moore, E.R.B.4
  • 6
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • Brosius J, Palmer ML, Kennedy PJ, Noller HF (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 75:4801-4805
    • (1978) Proc Natl Acad Sci USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, M.L.2    Kennedy, P.J.3    Noller, H.F.4
  • 7
    • 0021625686 scopus 로고
    • Microbial transformation of aromatic hydrocarbons
    • Atlas RM (ed) Macmillan, New York
    • Cerniglia E (1984) Microbial transformation of aromatic hydrocarbons. In: Atlas RM (ed) Petroleum microbiology. Macmillan, New York, pp 99-128
    • (1984) Petroleum Microbiology , pp. 99-128
    • Cerniglia, E.1
  • 8
    • 0013605499 scopus 로고
    • Regulatory components of the denitrification gene cluster of Pseudomonas stutzeri
    • Galli E, Silver S, Witholt B (eds) American Society for Microbiology, Washington, DC
    • Cuypers H, Zumft WG (1992) Regulatory components of the denitrification gene cluster of Pseudomonas stutzeri. In: Galli E, Silver S, Witholt B (eds) Pseudomonas: Molecular biology and biotechnology. American Society for Microbiology, Washington, DC, pp 188-197
    • (1992) Pseudomonas: Molecular Biology and Biotechnology , pp. 188-197
    • Cuypers, H.1    Zumft, W.G.2
  • 9
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny Inference Package (Version 3.2)
    • Felsenstein J (1989) PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5:164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 10
  • 12
    • 0003648115 scopus 로고
    • University Research Park, 575 Science Drive, Madison, Wis.
    • Genetics Computer Group, Inc. (1994) The Wisconsin Sequence Analysis Package, Version 8.0. University Research Park, 575 Science Drive, Madison, Wis.
    • (1994) The Wisconsin Sequence Analysis Package, Version 8.0
  • 15
    • 0027502979 scopus 로고
    • Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria
    • Herrick JB, Madsen EL, Batt CA, Ghiorse WC (1993) Polymerase chain reaction amplification of naphthalene-catabolic and 16S rRNA gene sequences from indigenous sediment bacteria. Appl Environ Microbiol 59:687-694
    • (1993) Appl Environ Microbiol , vol.59 , pp. 687-694
    • Herrick, J.B.1    Madsen, E.L.2    Batt, C.A.3    Ghiorse, W.C.4
  • 16
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HN (ed) Academic Press, New York
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, New York, pp 21-132
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 17
    • 0001857117 scopus 로고
    • 16S/23S sequencing
    • Stackebrandt E, Goodfellow M (eds) John Wiley & Sons, Chichester, UK
    • Lane DJ (1991) 16S/23S sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, UK, pp 115-175
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 18
    • 0028136885 scopus 로고
    • Bacterial gene transfer by natural genetic transformation in the environment
    • Lorenz MG, Wackernagel W (1994) Bacterial gene transfer by natural genetic transformation in the environment. Microbiol Rev 58:563-602
    • (1994) Microbiol Rev , vol.58 , pp. 563-602
    • Lorenz, M.G.1    Wackernagel, W.2
  • 21
    • 0000803252 scopus 로고
    • Genus I. Pseudomonas
    • Holt NRKaJG (ed) Williams & Wilkins, Baltimore
    • Palleroni NJ (1984) Genus I. Pseudomonas. In: Holt NRKaJG (ed) Bergey's manual of systematic bacteriology, vol 1. Williams & Wilkins, Baltimore, pp 141-199
    • (1984) Bergey's Manual of Systematic Bacteriology , vol.1 , pp. 141-199
    • Palleroni, N.J.1
  • 22
    • 0001829453 scopus 로고    scopus 로고
    • Nucleic acids II: The polymerase chain reaction
    • Hillis DM, Moritz C, Mable BK (ed) Sinauer Associates, Sunderland, Mass.
    • Palumbi SR (1996) Nucleic acids II: the polymerase chain reaction. In: Hillis DM, Moritz C, Mable BK (ed) Molecular systematics. Sinauer Associates, Sunderland, Mass. pp 205-247
    • (1996) Molecular Systematics , pp. 205-247
    • Palumbi, S.R.1
  • 23
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTP and FASTA
    • Doolittle RF (ed) Academic Press, San Diego, Calif
    • Pearson WR (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. In: Doolittle RF (ed) Methods in enzymology. Academic Press, San Diego, Calif, pp 63-98
    • (1990) Methods in Enzymology , pp. 63-98
    • Pearson, W.R.1
  • 24
    • 0023989064 scopus 로고
    • Improved tools for biological sequence analysis
    • Pearson WR, Lipman DJ (1988) Improved tools for biological sequence analysis. Proc Natl Acad Sci USA 85:2444-2448
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 26
    • 0023629714 scopus 로고
    • Survival strategies of bacteria in the natural environment
    • Roszak DB, Colwell RR (1987) Survival strategies of bacteria in the natural environment. Microbiol Rev 51:365-379
    • (1987) Microbiol Rev , vol.51 , pp. 365-379
    • Roszak, D.B.1    Colwell, R.R.2
  • 27
    • 0024438993 scopus 로고
    • A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA
    • Rychlik W, Rhoads RE (1989) A computer program for choosing optimal oligonucleotides for filter hybridization, sequencing and in vitro amplification of DNA. Nucleic Acids Res 17:8543-8551
    • (1989) Nucleic Acids Res , vol.17 , pp. 8543-8551
    • Rychlik, W.1    Rhoads, R.E.2
  • 28
    • 0025037431 scopus 로고
    • Optimization of the annealing temperature for DNA amplification in vitro
    • Rychlik W, Spencer WJ, Rhoads RE (1990) Optimization of the annealing temperature for DNA amplification in vitro. Nucleic Acids Res 18:6409-6412
    • (1990) Nucleic Acids Res , vol.18 , pp. 6409-6412
    • Rychlik, W.1    Spencer, W.J.2    Rhoads, R.E.3
  • 31
  • 35
    • 2642667612 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai Y-L, Olson BH (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 55:548-554
    • (1991) Appl Environ Microbiol , vol.55 , pp. 548-554
    • Tsai, Y.-L.1    Olson, B.H.2
  • 36
    • 0029029166 scopus 로고
    • Taxonomic note: A pragmatic approach to the nomenclature of phenotypically similar genomic groups
    • Ursing JB, Rosselló-Mora RA, García-Valdés E, Lalucat J (1995) Taxonomic note: a pragmatic approach to the nomenclature of phenotypically similar genomic groups. Int J Syst Bacteriol 45:604
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 604
    • Ursing, J.B.1    Rosselló-Mora, R.A.2    García-Valdés, E.3    Lalucat, J.4
  • 37
    • 0001279038 scopus 로고
    • Preparation of genomic DNA from bacteria
    • Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds) John Wiley & Sons, New York
    • Wilson K (1987) Preparation of genomic DNA from bacteria. In: Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (eds) Current protocols in molecular biology. John Wiley & Sons, New York, pp 2.4.1.-2.4.2.
    • (1987) Current Protocols in Molecular Biology , pp. 241-242
    • Wilson, K.1
  • 38
    • 0021012648 scopus 로고
    • Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids
    • Woese CR, Gutell R, Gupta R, Noller HF (1983) Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids. Microbiol Rev 47:621-669
    • (1983) Microbiol Rev , vol.47 , pp. 621-669
    • Woese, C.R.1    Gutell, R.2    Gupta, R.3    Noller, H.F.4
  • 39
    • 0025801605 scopus 로고
    • The effect of temperature and oligonucleotide primer length on the specificity and efficiency of amplification by the polymerase chain reaction
    • Wu DY, Ugozzoli L, Pal BK, Qian J, Wallace RB (1991) The effect of temperature and oligonucleotide primer length on the specificity and efficiency of amplification by the polymerase chain reaction. DNA Cell Biol 10:233-238
    • (1991) DNA Cell Biol , vol.10 , pp. 233-238
    • Wu, D.Y.1    Ugozzoli, L.2    Pal, B.K.3    Qian, J.4    Wallace, R.B.5
  • 40
    • 0027288036 scopus 로고
    • Polyvinylpyrrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils
    • Young CC, Burghoff RL, Keim LG, Minak-Bernero V, Lute JR, Hinton SM (1993) Polyvinylpyrrolidone-agarose gel electrophoresis purification of polymerase chain reaction-amplifiable DNA from soils. Appl Environ Microbiol 59:1972-1974
    • (1993) Appl Environ Microbiol , vol.59 , pp. 1972-1974
    • Young, C.C.1    Burghoff, R.L.2    Keim, L.G.3    Minak-Bernero, V.4    Lute, J.R.5    Hinton, S.M.6
  • 41
    • 0029859948 scopus 로고    scopus 로고
    • Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies
    • Zheng D, Alm EW, Stahl DA, Raskin L (1996) Characterization of universal small-subunit rRNA hybridization probes for quantitative molecular microbial ecology studies. Appl Environ Microbiol 62:4504-4513
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4504-4513
    • Zheng, D.1    Alm, E.W.2    Stahl, D.A.3    Raskin, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.