-
1
-
-
12644303221
-
The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio
-
Haffter P, Granato M, Brand M, Mullins MC, Hammerschmidt M, Kane DA, et al. The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development 1996;123:1-36. (Pubitemid 27056733)
-
(1996)
Development
, vol.123
, pp. 1-36
-
-
Haffter, P.1
Granato, M.2
Brand, M.3
Mullins, M.C.4
Hammerschmidt, M.5
Kane, D.A.6
Odenthal, J.7
Van Eeden, F.J.M.8
Jiang, Y.-J.9
Heisenberg, C.-P.10
Kelsh, R.N.11
Furutani-Seiki, M.12
Vogelsang, E.13
Beuchle, D.14
Schach, U.15
Fabian, C.16
Nusslein-Volhard, C.17
-
2
-
-
0033569405
-
A large-scale insertional mutagenesis screen in zebrafish
-
DOI 10.1101/gad.13.20.2713
-
Amsterdam A, Burgess S, Golling G, Chen W, Sun Z, Townsend K, et al. A large-scale insertional mutagenesis screen in zebrafish. Genes Dev 1999;13:2713-2724. (Pubitemid 29508558)
-
(1999)
Genes and Development
, vol.13
, Issue.20
, pp. 2713-2724
-
-
Amsterdam, A.1
Burgess, S.2
Golling, G.3
Chen, W.4
Sun, Z.5
Townsend, K.6
Farrington, S.7
Haldi, M.8
Hopkins, N.9
-
3
-
-
25444434840
-
Transgenes as screening tools to probe and manipulate the zebrafish genome
-
DOI 10.1002/dvdy.20541
-
Amsterdam A, Becker TS. Transgenes as screening tools to probe and manipulate the zebrafish genome. Dev Dyn 2005; 234:255-268. (Pubitemid 41369135)
-
(2005)
Developmental Dynamics
, vol.234
, Issue.2
, pp. 255-268
-
-
Amsterdam, A.1
Becker, T.S.2
-
4
-
-
9144251784
-
Enhancer trapping in zebrafish using the Sleeping Beauty transposon
-
Balciunas D, Davidson AE, Sivasubbu S, Hermanson SB, Welle Z, Ekker SC. Enhancer trapping in zebrafish using the Sleeping Beauty transposon. BMC Genomics 2004;5:62.
-
(2004)
BMC Genomics
, vol.5
, pp. 62
-
-
Balciunas, D.1
Davidson, A.E.2
Sivasubbu, S.3
Hermanson, S.B.4
Welle, Z.5
Ekker, S.C.6
-
5
-
-
79957812969
-
In vivo protein trapping produces a functional expression codex of the vertebrate proteome
-
Clark KJ, Balciunas D, Pogoda HM, Ding Y, Westcot SE, Bedell VM, et al. In vivo protein trapping produces a functional expression codex of the vertebrate proteome. Nat Methods 2011;8:506-515.
-
(2011)
Nat Methods
, vol.8
, pp. 506-515
-
-
Clark, K.J.1
Balciunas, D.2
Pogoda, H.M.3
Ding, Y.4
Westcot, S.E.5
Bedell, V.M.6
-
6
-
-
67649515089
-
The Gal4/UAS toolbox in zebrafish: New approaches for defining behavioral circuits
-
Scott EK. The Gal4/UAS toolbox in zebrafish: New approaches for defining behavioral circuits. J Neurochem 2009;110:441-456.
-
(2009)
J Neurochem
, vol.110
, pp. 441-456
-
-
Scott, E.K.1
-
7
-
-
84864284879
-
Temporallycontrolled site-specific recombination in zebrafish
-
Hans S, Kaslin J, Freudenreich D, Brand M. Temporallycontrolled site-specific recombination in zebrafish. PLoS One 2009;4:e4640.
-
(2009)
PLoS One
, vol.4
-
-
Hans, S.1
Kaslin, J.2
Freudenreich, D.3
Brand, M.4
-
8
-
-
78650406074
-
Generation of a non-leaky heat shock-inducible Cre line for conditional Cre/lox strategies in zebrafish
-
Hans S, Freudenreich D, Geffarth M, Kaslin J, Machate A, Brand M. Generation of a non-leaky heat shock-inducible Cre line for conditional Cre/lox strategies in zebrafish. Dev Dyn 2011;240:108-115.
-
(2011)
Dev Dyn
, vol.240
, pp. 108-115
-
-
Hans, S.1
Freudenreich, D.2
Geffarth, M.3
Kaslin, J.4
MacHate, A.5
Brand, M.6
-
10
-
-
84861409753
-
Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN)
-
Foley JE, Yeh JR, Maeder ML, Reyon D, Sander JD, Peterson RT, Joung JK. Rapid mutation of endogenous zebrafish genes using zinc finger nucleases made by Oligomerized Pool ENgineering (OPEN). PLoS One 2009;4:e4348.
-
(2009)
PLoS One
, vol.4
-
-
Foley, J.E.1
Yeh, J.R.2
Maeder, M.L.3
Reyon, D.4
Sander, J.D.5
Peterson, R.T.6
Joung, J.K.7
-
11
-
-
84861982214
-
An optimized two-finger archive for ZFN-mediated gene targeting
-
Gupta A, Christensen RG, Rayla AL, Lakshmanan A, Stormo GD, Wolfe SA. An optimized two-finger archive for ZFN-mediated gene targeting. Nat Methods 2012;9: 588-590.
-
(2012)
Nat Methods
, vol.9
, pp. 588-590
-
-
Gupta, A.1
Christensen, R.G.2
Rayla, A.L.3
Lakshmanan, A.4
Stormo, G.D.5
Wolfe, S.A.6
-
12
-
-
79961192836
-
Targeted gene disruption in somatic zebrafish cells using engineered TALENs
-
Sander JD, Cade L, Khayter C, Reyon D, Peterson RT, Joung JK, Yeh Jr. Targeted gene disruption in somatic zebrafish cells using engineered TALENs. Nat Biotechnol 2011;29:697- 698.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 697-698
-
-
Sander, J.D.1
Cade, L.2
Khayter, C.3
Reyon, D.4
Peterson, R.T.5
Joung, J.K.6
Yeh, J.R.7
-
13
-
-
79551685675
-
A TALE nuclease architecture for efficient genome editing
-
Miller JC, Tan S, Qiao G, Barlow KA, Wang J, Xia DF, et al. A TALE nuclease architecture for efficient genome editing. Nat Biotechnol 2011;29:143-148.
-
Nat Biotechnol
, vol.2011
, Issue.29
, pp. 143-148
-
-
Miller, J.C.1
Tan, S.2
Qiao, G.3
Barlow, K.A.4
Wang, J.5
Xia, D.F.6
-
14
-
-
79961185942
-
Heritable gene targeting in zebrafish using customized TALENs
-
Huang P, Xiao A, Zhou M, Zhu Z, Lin S, Zhang B. Heritable gene targeting in zebrafish using customized TALENs. Nat Biotechnol 2011;29:699-700.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 699-700
-
-
Huang, P.1
Xiao, A.2
Zhou, M.3
Zhu, Z.4
Lin, S.5
Zhang, B.6
-
15
-
-
0033780376
-
Effective targeted gene 'knockdown' in zebrafish
-
Nasevicius A, Ekker SC. Effective targeted gene 'knockdown' in zebrafish. Nat Genet 2000;26:216-220.
-
(2000)
Nat Genet
, vol.26
, pp. 216-220
-
-
Nasevicius, A.1
Ekker, S.C.2
-
16
-
-
34249680274
-
P53 activation by knockdown technologies
-
Robu ME, Larson JD, Nasevicius A, Beiraghi S, Brenner C, Farber SA, et al. p53 activation by knockdown technologies. PLoS Genet 2007;3:e78.
-
(2007)
PLoS Genet
, vol.3
-
-
Robu, M.E.1
Larson, J.D.2
Nasevicius, A.3
Beiraghi, S.4
Brenner, C.5
Farber, S.A.6
-
17
-
-
34548671921
-
Light-controlled gene silencing in zebrafish embryos
-
DOI 10.1038/nchembio.2007.30, PII NCHEMBIO200730
-
Shestopalov IA, Sinha S, Chen JK. Light-controlled gene silencing in zebrafish embryos. Nat Chem Biol 2007;3:650- 651. (Pubitemid 47417708)
-
(2007)
Nature Chemical Biology
, vol.3
, Issue.10
, pp. 650-651
-
-
Shestopalov, I.A.1
Sinha, S.2
Chen, J.K.3
-
18
-
-
70349388223
-
Versatile synthesis and rational design of caged morpholinos
-
Ouyang X, Shestopalov IA, Sinha S, Zheng G, Pitt CL, Li WH, et al. Versatile synthesis and rational design of caged morpholinos. J Am Chem Soc 2009;131:13255-13269.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 13255-13269
-
-
Ouyang, X.1
Shestopalov, I.A.2
Sinha, S.3
Zheng, G.4
Pitt, C.L.5
Li, W.H.6
-
19
-
-
58249088751
-
MicroRNAs: Target recognition and regulatory functions
-
Bartel DP. MicroRNAs: Target recognition and regulatory functions. Cell 2009;136:215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
21
-
-
80051889158
-
Drosophila RNAi screening in a postgenomic world
-
Bakal C. Drosophila RNAi screening in a postgenomic world. Brief Funct Genomics 2011;10:197-205.
-
(2011)
Brief Funct Genomics
, vol.10
, pp. 197-205
-
-
Bakal, C.1
-
23
-
-
0141611749
-
Modulation of gene expression by lentiviral-mediated delivery of small interfering RNA
-
Scherr M, Battmer K, Ganser A, Eder M. Modulation of gene expression by lentiviral-mediated delivery of small interfering RNA. Cell Cycle 2003;2:251-257.
-
(2003)
Cell Cycle
, vol.2
, pp. 251-257
-
-
Scherr, M.1
Battmer, K.2
Ganser, A.3
Eder, M.4
-
24
-
-
0142150130
-
Control of siRNA expression utilizing Cre-loxP recombination system
-
Kasim V, Miyagishi M, Taira K. Control of siRNA expression utilizing Cre-loxP recombination system. Nucleic Acids Res Suppl 2003:255-256.
-
(2003)
Nucleic Acids Res Suppl
, pp. 255-256
-
-
Kasim, V.1
Miyagishi, M.2
Taira, K.3
-
25
-
-
33751113540
-
Design of expression vectors for RNA interference based on miRNAs and RNA splicing
-
DOI 10.1111/j.1742-4658.2006.05534.x
-
Du G, Yonekubo J, Zeng Y, Osisami M, Frohman MA. Design of expression vectors for RNA interference based on miRNAs and RNA splicing. FEBS J 2006;273:5421-5427. (Pubitemid 44772398)
-
(2006)
FEBS Journal
, vol.273
, Issue.23
, pp. 5421-5427
-
-
Du, G.1
Yonekubo, J.2
Zeng, Y.3
Osisami, M.4
Frohman, M.A.5
-
26
-
-
79958025810
-
Limiting Ago protein restricts RNAi and microRNA biogenesis during early development in Xenopus laevis
-
Lund E, Sheets MD, Imboden SB, Dahlberg JE. Limiting Ago protein restricts RNAi and microRNA biogenesis during early development in Xenopus laevis. Genes Dev 2011;25: 1121-1131.
-
(2011)
Genes Dev
, vol.25
, pp. 1121-1131
-
-
Lund, E.1
Sheets, M.D.2
Imboden, S.B.3
Dahlberg, J.E.4
-
27
-
-
67650293274
-
Heritable and lineage-specific gene knockdown in zebrafish embryo
-
Dong M, Fu YF, Du TT, Jing CB, Fu CT, Chen Y, et al. Heritable and lineage-specific gene knockdown in zebrafish embryo. PLoS One 2009;4:e6125.
-
(2009)
PLoS One
, vol.4
-
-
Dong, M.1
Fu, Y.F.2
Du, T.T.3
Jing, C.B.4
Fu, C.T.5
Chen, Y.6
-
28
-
-
12644274664
-
Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio
-
Hammerschmidt M, Pelegri F, Mullins MC, Kane DA, Brand M, van Eeden FJ, et al. Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio. Development 1996;123:143-151. (Pubitemid 27056743)
-
(1996)
Development
, vol.123
, pp. 143-151
-
-
Hammerschmidt, M.1
Pelegri, F.2
Mullins, M.C.3
Kane, D.A.4
Brand, M.5
Van Eeden, F.J.M.6
Furutani-Seiki, M.7
Granato, M.8
Haffter, P.9
Heisenberg, C.-P.10
Jiang, Y.-J.11
Kelsh, R.N.12
Odenthal, J.13
Warga, R.M.14
Nusslein-Volhard, C.15
-
29
-
-
0043234810
-
Wnt-5/pipetail functions in vertebrate axis formation as a negative regulator of Wnt/β-catenin activity
-
DOI 10.1083/jcb.200303107
-
Westfall TA, Brimeyer R, Twedt J, Gladon J, Olberding A, Furutani-Seiki M, Slusarski DC. Wnt-5/pipetail functions in vertebrate axis formation as a negative regulator of Wnt/beta-catenin activity. J Cell Biol 2003;162:889-898. (Pubitemid 37087728)
-
(2003)
Journal of Cell Biology
, vol.162
, Issue.5
, pp. 889-898
-
-
Westfall, T.A.1
Brimeyer, R.2
Twedt, J.3
Gladon, J.4
Olberding, A.5
Furutani-Seiki, M.6
Slusarski, D.C.7
-
30
-
-
0037382333
-
The role of Ppt/Wnt5 in regulating cell shape and movement during zebrafish gastrulation
-
DOI 10.1016/S0925-4773(03)00004-2
-
Kilian B, Mansukoski H, Barbosa FC, Ulrich F, Tada M, Heisenberg CP. The role of Ppt/wnt5 in regulating cell shape and movement during zebrafish gastrulation. Mech Dev 2003;120:467-476. (Pubitemid 36379262)
-
(2003)
Mechanisms of Development
, vol.120
, Issue.4
, pp. 467-476
-
-
Kilian, B.1
Mansukoski, H.2
Barbosa, F.C.3
Ulrich, F.4
Tada, M.5
Heisenberg, C.-P.6
-
31
-
-
82655181513
-
Disc1 regulates both b-catenin-mediated and noncanonical Wnt signaling during vertebrate embryogenesis
-
De Rienzo G Bishop JA, Mao Y, Pan L, Ma TP, Moens CB, Tsai LH, Sive H. Disc1 regulates both b-catenin-mediated and noncanonical Wnt signaling during vertebrate embryogenesis. FASEB J 2011;25:4184-4197.
-
(2011)
FASEB J
, vol.25
, pp. 4184-4197
-
-
De Rienzo, G.1
Bishop, J.A.2
Mao, Y.3
Pan, L.4
Ma, T.P.5
Moens, C.B.6
Tsai, L.H.7
Sive, H.8
-
32
-
-
36448963734
-
The Tol2kit: A multisite gateway-based construction Kit for Tol2 transposon transgenesis constructs
-
DOI 10.1002/dvdy.21343
-
Kwan KM, Fujimoto E, Grabher C, Mangum BD, Hardy ME, Campbell DS, et al. The Tol2kit: A multisite gateway-based construction kit for Tol2 transposon transgenesis constructs. Dev Dyn 2007;236:3088-3099. (Pubitemid 350175006)
-
(2007)
Developmental Dynamics
, vol.236
, Issue.11
, pp. 3088-3099
-
-
Kwan, K.M.1
Fujimoto, E.2
Grabher, C.3
Mangum, B.D.4
Hardy, M.E.5
Campbell, D.S.6
Parant, J.M.7
Yost, H.J.8
Kanki, J.P.9
Chien, C.-B.10
-
33
-
-
80055118760
-
Zebrafish brain ventricle injection
-
Gutzman JH, Sive H. Zebrafish brain ventricle injection. J Vis Exp 2009:1218.
-
(2009)
J Vis Exp
, vol.1218
-
-
Gutzman, J.H.1
Sive, H.2
-
34
-
-
0034604076
-
Dishevelled controls cell polarity during Xenopus gastrulation
-
DOI 10.1038/35011077
-
Wallingford JB, Rowning BA, Vogeli KM, Rothbacher U, Fraser SE, Harland RM. Dishevelled controls cell polarity during Xenopus gastrulation. Nature 2000;405:81-85. (Pubitemid 30321819)
-
(2000)
Nature
, vol.405
, Issue.6782
, pp. 81-85
-
-
Wallingford, J.B.1
Rowning, B.A.2
Vogell, K.M.3
Rothbacher, U.4
Fraser, S.E.5
Harland, R.M.6
-
35
-
-
61449224546
-
Coherent but overlapping expression of microRNAs and their targets during vertebrate development
-
Shkumatava A, Stark A, Sive H, Bartel DP. Coherent but overlapping expression of microRNAs and their targets during vertebrate development. Genes Dev 2009;23:466-481.
-
(2009)
Genes Dev
, vol.23
, pp. 466-481
-
-
Shkumatava, A.1
Stark, A.2
Sive, H.3
Bartel, D.P.4
-
36
-
-
77950461913
-
No tail integrates two modes of mesoderm induction
-
Harvey SA, Tumpel S, Dubrulle J, Schier AF, Smith JC. No tail integrates two modes of mesoderm induction. Development 2010;137:1127-1135.
-
(2010)
Development
, vol.137
, pp. 1127-1135
-
-
Harvey, S.A.1
Tumpel, S.2
Dubrulle, J.3
Schier, A.F.4
Smith, J.C.5
-
37
-
-
33749023011
-
Minimizing the risk of reporting false positives in large-scale RNAi screens
-
DOI 10.1038/nmeth1006-777, PII NMETH1006-777
-
Echeverri CJ, Beachy PA, Baum B, Boutros M, Buchholz F, Chanda SK, et al. Minimizing the risk of reporting false positives in large-scale RNAi screens. Nat Methods 2006; 3:777-779. (Pubitemid 44445821)
-
(2006)
Nature Methods
, vol.3
, Issue.10
, pp. 777-779
-
-
Echeverri, C.J.1
Beachy, P.A.2
Baum, B.3
Boutros, M.4
Buchholz, F.5
Chanda, S.K.6
Downward, J.7
Ellenberg, J.8
Fraser, A.G.9
Hacohen, N.10
Hahn, W.C.11
Jackson, A.L.12
Kiger, A.13
Linsley, P.S.14
Lum, L.15
Ma, Y.16
Mathey-Prevot, B.17
Root, D.E.18
Sabatini, D.M.19
Taipale, J.20
Perrimon, N.21
Bernards, R.22
more..
-
38
-
-
76449098507
-
Epithelial relaxation mediated by the myosin phosphatase regulator Mypt1 is required for brain ventricle lumen expansion and hindbrain morphogenesis
-
Gutzman JH, Sive H. Epithelial relaxation mediated by the myosin phosphatase regulator Mypt1 is required for brain ventricle lumen expansion and hindbrain morphogenesis. Development 2010;137:795-804.
-
(2010)
Development
, vol.137
, pp. 795-804
-
-
Gutzman, J.H.1
Sive, H.2
-
39
-
-
84870002860
-
Zebrafish homologs of 16p11.2, a genomic region associated with brain disoders, are active during brain development, and include two deletion dosage sensor genes
-
e-pub ahead of print
-
Blaker-Lee A, Gupta S, McCammon JM, De Rienzo G, Sive H. Zebrafish homologs of 16p11.2, a genomic region associated with brain disoders, are active during brain development, and include two deletion dosage sensor genes. Dis Model Mech 2012 (e-pub ahead of print).
-
(2012)
Dis Model Mech
-
-
Blaker-Lee, A.1
Gupta, S.2
McCammon, J.M.3
De Rienzo, G.4
Sive, H.5
-
40
-
-
84874191172
-
-
Posted to Website July 13, 2010
-
Gutzman JH, Sive H. RNAi for zebrafish. https://wiki.zfin.org/display/ prot/RNAi + for + Zebrafish (posted to website July 13, 2010).
-
RNAi for Zebrafish
-
-
Gutzman, J.H.1
Sive, H.2
-
41
-
-
36448985601
-
Gateway compatible vectors for analysis of gene function in the zebrafish
-
DOI 10.1002/dvdy.21354
-
Villefranc JA, Amigo J, Lawson ND. Gateway compatible vectors for analysis of gene function in the zebrafish. Dev Dyn 2007;236:3077-3087. (Pubitemid 350175005)
-
(2007)
Developmental Dynamics
, vol.236
, Issue.11
, pp. 3077-3087
-
-
Villefranc, J.A.1
Amigo, J.2
Lawson, N.D.3
-
42
-
-
34250374820
-
Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot
-
Pall GS, Codony-Servat C, Byrne J, Ritchie L, Hamilton A. Carbodiimide-mediated cross-linking of RNA to nylon membranes improves the detection of siRNA, miRNA and piRNA by northern blot. Nucleic Acids Res 2007;35:e60.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pall, G.S.1
Codony-Servat, C.2
Byrne, J.3
Ritchie, L.4
Hamilton, A.5
-
43
-
-
0042510148
-
Vhnf1 and Fgf signals synergize to specify rhombomere identity in the zebrafish hindbrain
-
DOI 10.1242/dev.00572
-
Wiellette EL, Sive H. vhnf1 and Fgf signals synergize to specify rhombomere identity in the zebrafish hindbrain. Development 2003;130:3821-3829. (Pubitemid 37039086)
-
(2003)
Development
, vol.130
, Issue.16
, pp. 3821-3829
-
-
Wiellette, E.L.1
Sive, H.2
-
44
-
-
16644377513
-
A high-throughput method for identifying N-ethyl-Nnitrosourea (ENU)-induced point mutations in zebrafish
-
Draper BW, McCallum CM, Stout JL, Slade AJ, Moens CB. A high-throughput method for identifying N-ethyl-Nnitrosourea (ENU)-induced point mutations in zebrafish. Methods Cell Biol 2004;77:91-112.
-
(2004)
Methods Cell Biol
, vol.77
, pp. 91-112
-
-
Draper, B.W.1
McCallum, C.M.2
Stout, J.L.3
Slade, A.J.4
Moens, C.B.5
|