A Large Insertion in bHLH Transcription Factor BrTT8 Resulting in Yellow Seed Coat in Brassica rapa

PLoS ONE

Volumn 7, Issue 9, 2012, Pages

  Li, Xia ^a   Chen, Li ^b   Hong, Meiyan ^a   Zhang, Yan ^c   Zu, Feng ^d   Wen, Jing ^a   Yi, Bin ^a   Ma, Chaozhi ^a   Shen, Jinxiong ^a   Tu, Jinxing ^a   Fu, Tingdong ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b Guizhou Academy of Agricultural Sciences   (China)

^c Guangdong Academy of Agriculture Sciences   (China)

^d INSTITUTE OF MEDICINAL PLANTS   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR; BASIC HELIX LOOP HELIX TRANSCRIPTION FACTOR TRANSPARENT TESTA8; DNA; FLAVONOID; MESSENGER RNA; PROANTHOCYANIDIN; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; BRASSICA RAPA; BRASSICA RAPA TRANSPARENT TESTA8 GENE; COLOR; CONTROLLED STUDY; GENE CONTROL; GENE EXPRESSION REGULATION; GENE INSERTION; GENE LOCUS; GENE MAPPING; GENETIC IDENTIFICATION; GENETIC TRAIT; LATE BIOSYNTHETIC GENE; LOSS OF FUNCTION MUTATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT GENOME; PLANT PARAMETERS; REVERTANT; SEED COAT COLOR FORMATION; SEED HUSK; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TRANSPOSON;

BASE SEQUENCE; BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTORS; BRASSICA RAPA; CHROMOSOME MAPPING; CROSSES, GENETIC; DNA, PLANT; FLAVONOIDS; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENETIC ASSOCIATION STUDIES; GENETIC COMPLEMENTATION TEST; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; MUTATION; PHENOTYPE; PHYLOGENY; PIGMENTATION; PLANT PROTEINS; QUANTITATIVE TRAIT, HERITABLE; RNA, MESSENGER; SEEDS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICA; BRASSICA RAPA; BRASSICA RAPA TRILOCULARIS;

EID: 84866281924     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0044145     Document Type: Article

References (48)

1. Shirzadegan M, Robbelen G, (1985) Infiuence of seed colour and hull proportions on quality properties of seeds in Brassica napus L. Fette Seifen Anstrichm 87: 235-237.
2. Tang ZL, Li JN, Zhang XK, Chen L, Wang R, (1997) Genetic variation of yellow-seeded rapeseed lines (Brassica napus L.) from different genetic sources. Plant Breeding 116: 471-474.
3. Meng JL, Shi SW, Gan L, Li ZY, Qu XS, (1998) The production of yellow-seeded Brassica napus (AACC) through crossing interspecific hybrids of B. campestris (AA) and B. carinata (BBCC) with B. napus. Euphytica 103: 329-333.
4. Chen BY, Heneen WK, Jonsson R, (1988) Resynthesis of Brassica napus L. through interspecific hybridization between B. alboglabra bailey and B. campestris L. with special emphasis on seed color. Plant Breeding 101: 52-59.
5. Rahman MH, (2001) Production of yellow-seeded through interspecific crosses. Plant Breeding 120: 463-472.
6. Schwetka A, (1982) Inheritance of seed color in turnip rape (Brassica campestris L.). Theoretical and Applied Genetics 62: 161-169.
7. Zaman MW, (1989) Inheritance of seed colour in Brassica campestris. Sveriges Utsadesförenings Tidskrift 99: 205-207.
8. Rahman MH, (2001) Inheritance of petal colour and its independent segregation from seed color in Brassica rapa. Plant breeding 120: 197-200.
9. Chen BY, Jorgensen RB, Cheng BF, Heneen WK, (1997) Identification and chromosomal assignment of RAPD marker linked with a gene for seed coat color in a Brassica campestris-alboglabra addition line. Hereditas 126: 133-138.
10. Rahman MH, McVetty Peter BE, Li GY, (2007) Development of SRAP, SNP and Multiplexed SCAR molecular markers for the major seed coat color gene in Brassica rapa L. Theoretical and Applied Genetics 115: 1101-1107.
11. Zhang JF, Ying L, Yuan YX, Zhang XW, Geng JF, et al. (2009) Map-based cloning and characterization of a gene controlling hairiness and seed coat color traits in Brassica rapa. Plant Molecular Biology 69(5): 53-63.
12. Yi B, Zeng FQ, Lei SL, Chen YN, Yao XQ, et al. (2010) Two duplicate CYP704B1 homologous genes BnMs1 and BnMs2 are required for pollen exine formation and tapetal development in Brassica napus. The Plant Journal 63: 925-938.
13. Dun XL, Zhou ZF, Xia SQ, Wen J, Yi B, et al. (2011) BnaC.Tic40, a plastid inner membrane translocon originating from Brassica oleracea, is essential for tapetal function and microspore development in Brassica napus. The Plant Journal 68: 532-545.
14. Carey CC, Strahle JT, Selinger DA, Chandler VL, (2004) Mutations in the pale aleurone color1 regulatory gene of the Zea mays anthocyanin pathway have distinct phenotypes relative to the functionally similar TRANSPARENT TESTA GLABRA1 gene in Arabidopsis thaliana. The Plant Cell 16: 450-464.
15. Kitamura S, Shikazono N, Tanaka A, (2004) TRANSPARENT TESTA 19 is involved in the accumulation of both anthocyanins and proanthocyanidins in Arabidopsis. The Plant Journal 37: 104-114.
16. Furukawa T, Maekawa M, Oki T, Suda I, Iida S, et al. (2007) The Rc and Rd genes are involved in proanthocyanidin synthesis in rice pericarp. The Plant Journal 49: 91-102.
17. Nesi N, Debeaujon I, Jond C, Stewart AJ, Jenkins GI, et al. (2002) The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat. The Plant Cell 14: 2463-2479.
18. Nesi N, Debeaujon I, Jond C, Pelletier G, Caboche M, et al. (2000) The TT8 gene encodes a basic helix-loop-helix domain protein required for expression of DFR and BAN genes in Arabidopsis siliques. The Plant Cell 12: 1863-1878.
19. Hichri I, Barrieu F, Bogs J, Kappel C, Delrot S, et al. (2011) Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway. Journal of Experimental Botany 62(8):: 2465-2483.
20. Zhang F, Gonzalez A, Zhao M, Payne CT, Lloyd A, (2003) A network of redundant bHLH proteins functions in all TTG1-dependent pathways of Arabidopsis. Development 130: 4859-4869.
21. Chandler VL, Radicella JP, Robbins TP, Chen J, Turks D, (1989) Two regulatory genes of the maize anthocyanin pathway are homologous: isolation of B utilizing R genomic sequences. The Plant Cell 1: 1175-1183.
22. Sweeney MT, Thomson MJ, Pfeil BE, McCouch S, (2006) Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. The Plant Cell 18: 283-294.
23. Pelletier MK, Murrell JR, Shirley BW, (1997) Characterization of flavonol synthase and leucoanthocyanidin dioxygenase genes in Arabidopsis: Further evidence for differential regulation of "early" and "late" genes. Plant Physiology 113: 1437-1445.
24. Abrahams S, Lee E, Walker AR, Tanner GJ, Larkin PJ, et al. (2003) The Arabidopsis TDS4 gene encodes leucoanthocyanidin dioxygenase (LDOX) and is essential for proanthocyanidin synthesis and vacuole development. The Plant Journal 35: 624-636.
25. Baudry A, Caboche M, Lepiniec L, (2006) TT8 controls its own expression in a feedback regulation involving TTG1 and homologous MYB and bHLH factors, allowing a strong and cell-specific accumulation of flavonoids in Arabidopsis thaliana. The Plant Journal 46: 768-779.
26. Baudry A, Heim MA, Dubreucq B, Caboche M, Weisshaar B, et al. (2004) TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana. The Plant Journal 39: 366-38.
27. Kurauchia T, Kasaia A, Tougoub M, Sendaa M, (2011) Endogenous RNA interference of chalcone synthase genes in soybean: Formation of double-stranded RNA of GmIRCHS transcripts and structure of the 5′ and 3′ends of short interfering RNAs. Journal of Plant Physiology 168: 1264-1270.
28. Ohno S, Hosokawa M, Hoshino A, Kitamura Y, Morita M, et al. (2011) bHLH transcription factor, DvIVS, is involved in regulation of anthocyanin synthesis in dahlia (Dahlia variabilis). Journal of Experimental Botany 62(14):: 5105-5116.
29. Choi J, Hoshino A, Park K, Park I, Iida S, (2007) Spontaneous mutations caused by a Helitron transposon, Hel-It1, in morning glory, Ipomoea tricolor. The Plant Journal 49: 924-934.
30. Lepiniec L, Debeaujon I, Routaboul J-M, Baudry A, Pourcel L, et al. (2006) Genetics and biochemistry of seed flavonoids. Annual Review of Plant Biology 57: 405-430.
31. Nesi N, Lucas MO, Auger B, Lécureuil A, Guerche P, et al. (2009) The promoter of the Arabidopsis thaliana BAN gene is active in proanthocyanidin-accumulating cells of the Brassica napus seed coat. Plant Cell Reports 28: 601-617.
32. Pourcel L, Routaboul JM, Kerhoas L, Caboche M, Lepiniec L, et al. (2005) TRANSPARENT TESTA10 encodes a Laccase-like enzyme involved in oxidative polymerization of flavonoids in Arabidopsis seed coat. The Plant Cell 17: 2966-2980.
33. Auger B, Baron C, Lucas MO, Vautrin S, Berge's H, et al. (2009) Brassica orthologs from BANYULS belong to a small multigene family, which is involved in procyanidin accumulation in the seed. Planta 230: 1167-1183.
34. Wei YL, Li JN, Lu J, Tang ZL, Pu DC, et al. (2006) Molecular cloning of Brassica napus TRANSPARENT TESTA 2 gene family encoding potential MYB regulatory proteins of proanthocyanidin biosynthesis. Molecular Biology Reports 34(2):: 105-120.
35. Broun Pierre, (2005) Transcriptional control of flavonoid biosynthesis: a complex network of conserved regulators involved in multiple aspects of differentiation in Arabidopsis. Current Opinion in Plant Biology 8: 272-279.
36. Feller A, Machemer K, Braun EL, Grotewold E, (2011) Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. The Plant Journal 66: 94-116.
37. Yang LX, Bennetzen JL, (2009) Structure-based discovery and description of plant and animal Helitrons. Proceedings of the National Academy of Sciences, USA 106 (31) (): 12832-12837.
38. Morgante M, Brunner S, Pea G, Fengler K, Zuccolo A, et al. (2005) Gene duplication and exon shuffling by Helitron-like transposons generate intraspecies diversity in maize. Nature Genetics 37: 997-1002.
39. Lal SK, Giroux MJ, Brendel V, Vallejos CE, Hannah LC, (2003) The maize genome contains a Helitron insertion. The Plant Cell 15: 381-391.
40. Yang L, Bennetzen JL, (2009) Distribution, diversity, evolution, and survival of Helitrons in the maize genome. Proceedings of the National Academy of Sciences, USA 106: 19922-19927.
41. Bennetzen JL, (2005) Transposable elements, gene creation and genome rearrangement in flowering plants. Current opinion in genetics & development 15: 621-627.
42. Pires N, Dolan L, (2010) Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants. Molecular Biology and Evolution 27(4):: 862-874.
43. Lei SL, Yao XQ, Yi B, Chen W, Ma CZ, et al. (2007) Towards map-based cloning: fine mapping of a recessive genic male-sterile gene (BnMs2) in Brassica napus L. and syntenic region identification based on the Arabidopsis thaliana genome sequences. Theoretical and Applied Genetics 115: 643-651.
44. Liu ZW, Fu TD, Tu JX, Chen BY, (2005) Inheritance of seed colour and identification of RAPD and AFLP markers linked to the seed colour gene in rapeseed (Brassica napus L.). Theoretical and Applied Genetics 110: 303-310.
45. Liu RH, Meng JL, (2003) Mapdraw, a Microsoft Excel macro for draw genetic linkage maps based on given genetic linkage data. Hereditas (Beijing) 25: 317-321.
46. Ding Y, (2006) Cloning, Characterisation and Expression of Caleosin Gene from Brassica napus. [Master thesis] Wuhan (China): Huazhong Agricultural University pp. 21-22.
47. Hajdukiewicz P, Svab Z, Maliga P, (1994) The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Molecular Biology 25: 989-994.
48. Aastrup S, Outtrup H, Erdal K, (1984) Location of the proanthocyanidins in the barley grain. Carlsberg Research Communication 49: 105-109.