-
1
-
-
0002367729
-
MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
-
Tokyo, Japan: Institute of Statistical Mathematics
-
Adachi, J., and Hasegawa, M. (1996). MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood. Computer Science Monographs, No. 28. (Tokyo, Japan: Institute of Statistical Mathematics).
-
(1996)
Computer Science Monographs, No. 28
-
-
Adachi, J.1
Hasegawa, M.2
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0034989753
-
Flavonoids act as negative regulators of auxin transport in vivo in arabidopsis
-
Brown, D.E., Rashotte, A.M., Murphy, A.S., Normanly, J., Tague, B.W., Peer, W.A., Taiz, L, and Muday, G.K. (2001). Flavonoids act as negative regulators of auxin transport in vivo in arabidopsis. Plant Physiol. 126, 524-535.
-
(2001)
Plant Physiol.
, vol.126
, pp. 524-535
-
-
Brown, D.E.1
Rashotte, A.M.2
Murphy, A.S.3
Normanly, J.4
Tague, B.W.5
Peer, W.A.6
Taiz, L.7
Muday, G.K.8
-
4
-
-
0030220475
-
The maize repressor-like gene intensifier1 shares homology with the r1/ b1 multigene family of transcription factors and exhibits missplicing
-
Burr, F.A., Burr, B., Scheffler, B.E., Blewitt, M., Wienand, U., and Matz, E.C. (1996). The maize repressor-like gene intensifier1 shares homology with the r1/b1 multigene family of transcription factors and exhibits missplicing. Plant Cell 8, 1249-1259.
-
(1996)
Plant Cell
, vol.8
, pp. 1249-1259
-
-
Burr, F.A.1
Burr, B.2
Scheffler, B.E.3
Blewitt, M.4
Wienand, U.5
Matz, E.C.6
-
5
-
-
0024773335
-
Two regulatory genes of the maize anthocyanin pathway are homologous: Isolation of B utilizing R genomic sequences
-
Chandler, V.L., Radicella, J.P., Robblns, T.P., Chen, J., and Turks, D. (1989). Two regulatory genes of the maize anthocyanin pathway are homologous: Isolation of B utilizing R genomic sequences. Plant Cell 1, 1175-1183.
-
(1989)
Plant Cell
, vol.1
, pp. 1175-1183
-
-
Chandler, V.L.1
Radicella, J.P.2
Robblns, T.P.3
Chen, J.4
Turks, D.5
-
6
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16, 735-743.
-
(1998)
Plant J.
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
7
-
-
0027728764
-
Maize anthocyanin regulatory gene pl is a duplicate of c1 that functions in the plant
-
Cone, K.C., Cocciolone, S.M., Burr, F.A., and Burr, B. (1993). Maize anthocyanin regulatory gene pl is a duplicate of c1 that functions in the plant. Plant Cell 5, 1795-1805.
-
(1993)
Plant Cell
, vol.5
, pp. 1795-1805
-
-
Cone, K.C.1
Cocciolone, S.M.2
Burr, F.A.3
Burr, B.4
-
8
-
-
0031010722
-
The an11 locus controlling flower pigmentation in petunia encodes a novel WD-repeat protein conserved in yeast, plants, and animals
-
de Vetten, N., Quattrocchio, F., Mol, J., and Koes, R. (1997). The an11 locus controlling flower pigmentation in petunia encodes a novel WD-repeat protein conserved in yeast, plants, and animals. Genes Dev. 11, 1422-1434.
-
(1997)
Genes Dev.
, vol.11
, pp. 1422-1434
-
-
De Vetten, N.1
Quattrocchio, F.2
Mol, J.3
Koes, R.4
-
9
-
-
0033582147
-
A cytochrome b5 is required for full activity of flavonoid 3′, 5′-hydroxylase, a cytochrome P450 involved in the formation of blue flower colors
-
de Vetten, N., ter Horst, J., van Schalk, H.P., de Boer, A., Mol, J., and Koes, R. (1999). A cytochrome b5 is required for full activity of flavonoid 3′, 5′-hydroxylase, a cytochrome P450 involved in the formation of blue flower colors. Proc. Natl. Acad. Sci. USA 96, 778-783.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 778-783
-
-
De Vetten, N.1
Ter Horst, J.2
Van Schalk, H.P.3
De Boer, A.4
Mol, J.5
Koes, R.6
-
10
-
-
0026326053
-
Genetic and developmental control of anthocyanin biosynthesis
-
Dooner, H.K., Robbins, T.P., and Jorgensen, R.A. (1991). Genetic and developmental control of anthocyanin biosynthesis. Annu. Rev. Genet. 25, 173-199.
-
(1991)
Annu. Rev. Genet.
, vol.25
, pp. 173-199
-
-
Dooner, H.K.1
Robbins, T.P.2
Jorgensen, R.A.3
-
11
-
-
0034353111
-
Mediator of paramutationl is required for establishment and maintenance of paramutation at multiple maize loci
-
Dorweiler, J.E., Carey, C.C., Kubo, K.M., Hollick, J.B., Kermicle, J.L., and Chandler, V.L. (2000). Mediator of paramutationl is required for establishment and maintenance of paramutation at multiple maize loci. Plant Cell 12, 2101-2118.
-
(2000)
Plant Cell
, vol.12
, pp. 2101-2118
-
-
Dorweiler, J.E.1
Carey, C.C.2
Kubo, K.M.3
Hollick, J.B.4
Kermicle, J.L.5
Chandler, V.L.6
-
12
-
-
0000122573
-
PHYLIP: Phylogeny inference package (version 3.2)
-
Felsenstein, J. (1989). PHYLIP: Phylogeny inference package (version 3.2). Cladistics 5, 164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
13
-
-
0028582006
-
The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root
-
Galway, M.E., Masucci, J.D., Lloyd, A.M., Walbot, V., Davis, R.W., and Schiefelbein, J.W. (1994). The TTG gene is required to specify epidermal cell fate and cell patterning in the Arabidopsis root. Dev. Biol. 166, 740-754.
-
(1994)
Dev. Biol.
, vol.166
, pp. 740-754
-
-
Galway, M.E.1
Masucci, J.D.2
Lloyd, A.M.3
Walbot, V.4
Davis, R.W.5
Schiefelbein, J.W.6
-
14
-
-
0026638942
-
Functional analysis of the transcriptional activator encoded by the maize B gene: Evidence for a direct functional interaction between two classes of regulatory proteins
-
Goff, S.A., Cone, K.C., and Chandler, V.L. (1992). Functional analysis of the transcriptional activator encoded by the maize B gene: Evidence for a direct functional interaction between two classes of regulatory proteins. Genes Dev. 6, 864-875.
-
(1992)
Genes Dev.
, vol.6
, pp. 864-875
-
-
Goff, S.A.1
Cone, K.C.2
Chandler, V.L.3
-
15
-
-
0025307383
-
Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues
-
Goff, S.A., Klein, T.M., Roth, B.A., Fromm, M.E., Cone, K.C., Radicella, J.P., and Chandler, V.L. (1990). Transactivation of anthocyanin biosynthetic genes following transfer of B regulatory genes into maize tissues. EMBO J. 9, 2517-2522.
-
(1990)
EMBO J.
, vol.9
, pp. 2517-2522
-
-
Goff, S.A.1
Klein, T.M.2
Roth, B.A.3
Fromm, M.E.4
Cone, K.C.5
Radicella, J.P.6
Chandler, V.L.7
-
16
-
-
0026573695
-
A common gene regulates pigmentation pattern in diverse plant species
-
Goodrich, J., Carpenter, R., and Coen, E.S. (1992). A common gene regulates pigmentation pattern in diverse plant species. Cell 68, 955-964.
-
(1992)
Cell
, vol.68
, pp. 955-964
-
-
Goodrich, J.1
Carpenter, R.2
Coen, E.S.3
-
17
-
-
0031772791
-
Engineering secondary metabolism in maize cells by ectopic expression of transcription factors
-
Grotewold, E., Chamberlin, M., Snook, M., Siame, B., Butler, L., Swenson, J., Maddock, S., Clair, G.S., and Bowen, B. (1998). Engineering secondary metabolism in maize cells by ectopic expression of transcription factors. Plant Cell 10, 721-740.
-
(1998)
Plant Cell
, vol.10
, pp. 721-740
-
-
Grotewold, E.1
Chamberlin, M.2
Snook, M.3
Siame, B.4
Butler, L.5
Swenson, J.6
Maddock, S.7
Clair, G.S.8
Bowen, B.9
-
18
-
-
1042296256
-
The maize MP1 gene encodes a WD-protein similar to An11 and TTG
-
Hernandez, J.M., Pizzirusso, M., and Grotewold, E. (2000). The maize MP1 gene encodes a WD-protein similar to An11 and TTG. Maize Genetics Cooperative Newsletter 74, 24.
-
(2000)
Maize Genetics Cooperative Newsletter
, vol.74
, pp. 24
-
-
Hernandez, J.M.1
Pizzirusso, M.2
Grotewold, E.3
-
19
-
-
0001908076
-
The complex syndrome of TTG mutants
-
Koorneef, M. (1981). The complex syndrome of TTG mutants. Arabidopsis Information Service 18, 45-51.
-
(1981)
Arabidopsis Information Service
, vol.18
, pp. 45-51
-
-
Koorneef, M.1
-
20
-
-
0032895466
-
Allele-specific interactions between ttg and gl1 during trichome development in Arabidopsis thaliana
-
Larkin, J.C., Walker, J.D., Bolognesi-Winfield, A.C., Gray, J.C., and Walker, A.R. (1999). Allele-specific interactions between ttg and gl1 during trichome development in Arabidopsis thaliana. Genetics 151, 1591-1604.
-
(1999)
Genetics
, vol.151
, pp. 1591-1604
-
-
Larkin, J.C.1
Walker, J.D.2
Bolognesi-Winfield, A.C.3
Gray, J.C.4
Walker, A.R.5
-
21
-
-
0022763162
-
Gene-dependent flavonoid 3′-hydroxylation in maize
-
Larson, R., Bussard, J.B., and Coe, E.H., Jr. (1986). Gene-dependent flavonoid 3′-hydroxylation in maize. Biochem. Genet. 24, 615-624.
-
(1986)
Biochem. Genet.
, vol.24
, pp. 615-624
-
-
Larson, R.1
Bussard, J.B.2
Coe Jr., E.H.3
-
22
-
-
0032091079
-
Activation of the maize anthocyanin gene a2 is mediated by an element conserved in many anthocyanin promoters
-
Lesnick, M.L., and Chandler, V.L. (1998). Activation of the maize anthocyanin gene a2 is mediated by an element conserved in many anthocyanin promoters. Plant Physiol. 117, 437-445.
-
(1998)
Plant Physiol.
, vol.117
, pp. 437-445
-
-
Lesnick, M.L.1
Chandler, V.L.2
-
23
-
-
0027057528
-
Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1
-
Lloyd, A.M., Walbot, V., and Davis, R.W. (1992). Arabidopsis and Nicotiana anthocyanin production activated by maize regulators R and C1. Science 258, 1773-1775.
-
(1992)
Science
, vol.258
, pp. 1773-1775
-
-
Lloyd, A.M.1
Walbot, V.2
Davis, R.W.3
-
24
-
-
0024722623
-
Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region
-
Ludwig, S.R., Habera, LF., Dellaporta, S.L., and Wessler, S.R. (1989). Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region. Proc. Natl. Acad. Sci. USA 86, 7092-7096.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 7092-7096
-
-
Ludwig, S.R.1
Habera, L.F.2
Dellaporta, S.L.3
Wessler, S.R.4
-
25
-
-
0027143055
-
Control of Pigment Biosynthesis Genes during Petal Development
-
Martin, C., and Gerats, T. (1993). Control of Pigment Biosynthesis Genes during Petal Development. Plant Cell 5, 1253-1264.
-
(1993)
Plant Cell
, vol.5
, pp. 1253-1264
-
-
Martin, C.1
Gerats, T.2
-
26
-
-
0032102346
-
How genes paint flowers and seeds
-
Mol, J., Grotewold, E., and Koes, R. (1998). How genes paint flowers and seeds. Trends Plant Sci. 3, 212-217.
-
(1998)
Trends Plant Sci.
, vol.3
, pp. 212-217
-
-
Mol, J.1
Grotewold, E.2
Koes, R.3
-
27
-
-
0033768615
-
The TT8 gene encodes a basic helix-loop-helix domain protein required for expression of DFR and BAN genes in Arabidopsis siliques
-
Nesi, N., Debeaujon, I., Jond, C., Pelletier, G., Caboche, M., and Lepiniec, L. (2000). The TT8 gene encodes a basic helix-loop-helix domain protein required for expression of DFR and BAN genes in Arabidopsis siliques. Plant Cell 12, 1863-1878.
-
(2000)
Plant Cell
, vol.12
, pp. 1863-1878
-
-
Nesi, N.1
Debeaujon, I.2
Jond, C.3
Pelletier, G.4
Caboche, M.5
Lepiniec, L.6
-
28
-
-
0034816095
-
The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed
-
Nesi, N., Jond, C., Debeaujon, I., Caboche, M., and Lepiniec, L. (2001). The Arabidopsis TT2 gene encodes an R2R3 MYB domain protein that acts as a key determinant for proanthocyanidin accumulation in developing seed. Plant Cell 13, 2099-2114.
-
(2001)
Plant Cell
, vol.13
, pp. 2099-2114
-
-
Nesi, N.1
Jond, C.2
Debeaujon, I.3
Caboche, M.4
Lepiniec, L.5
-
29
-
-
0033756404
-
GL3 encodes a bHLH protein that regulates trichome development in arabidopsis through interaction with GL1 and TTG1
-
Payne, C.T., Zhang, F., and Lloyd, A.M. (2000). GL3 encodes a bHLH protein that regulates trichome development in arabidopsis through interaction with GL1 and TTG1. Genetics 156, 1349-1362.
-
(2000)
Genetics
, vol.156
, pp. 1349-1362
-
-
Payne, C.T.1
Zhang, F.2
Lloyd, A.M.3
-
30
-
-
0023475927
-
The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators
-
Paz-Ares, J., Ghosal, D., Wienand, U., Peterson, P.A., and Saedler, H. (1987). The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators. EMBO J. 6, 3553-3558.
-
(1987)
EMBO J.
, vol.6
, pp. 3553-3558
-
-
Paz-Ares, J.1
Ghosal, D.2
Wienand, U.3
Peterson, P.A.4
Saedler, H.5
-
31
-
-
0034984690
-
Flavonoid accumulation patterns of transparent testa mutants of arabidopsis
-
Peer, W.A., Brown, D.E., Tague, B.W., Muday, G.K., Taiz, L., and Murphy, A.S. (2001). Flavonoid accumulation patterns of transparent testa mutants of arabidopsis. Plant Physiol. 126, 536-548.
-
(2001)
Plant Physiol.
, vol.126
, pp. 536-548
-
-
Peer, W.A.1
Brown, D.E.2
Tague, B.W.3
Muday, G.K.4
Taiz, L.5
Murphy, A.S.6
-
32
-
-
0035542785
-
MYB61 is required for mucilage deposition and extrusion in the Arabidopsis seed coat
-
Penfield, S., Meissner, R.C., Shoue, D.A., Carpita, N.C., and Bevan, M.W. (2001). MYB61 is required for mucilage deposition and extrusion in the Arabidopsis seed coat. Plant Cell 13, 2777-2791.
-
(2001)
Plant Cell
, vol.13
, pp. 2777-2791
-
-
Penfield, S.1
Meissner, R.C.2
Shoue, D.A.3
Carpita, N.C.4
Bevan, M.W.5
-
33
-
-
0035165581
-
The TIGR Gene Indices: Analysis of gene transcript sequences in highly sampled eukaryotic species
-
Quackenbush, J., Cho, J., Lee, D., Liang, F., Holt, I., Karamycheva, S., Parvizi, B., Pertea, G., Sultana, R., and White, J. (2001). The TIGR Gene Indices: Analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Res. 29, 159-164.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 159-164
-
-
Quackenbush, J.1
Cho, J.2
Lee, D.3
Liang, F.4
Holt, I.5
Karamycheva, S.6
Parvizi, B.7
Pertea, G.8
Sultana, R.9
White, J.10
-
34
-
-
0032005926
-
Analysis of bHLH and MYB domain proteins: Species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes
-
Quattrocchio, F., Wing, J.F., van der Woude, K., Mol, J.N., and Koes, R. (1998). Analysis of bHLH and MYB domain proteins: Species-specific regulatory differences are caused by divergent evolution of target anthocyanin genes. Plant J. 13, 475-488.
-
(1998)
Plant J.
, vol.13
, pp. 475-488
-
-
Quattrocchio, F.1
Wing, J.F.2
Van Der Woude, K.3
Mol, J.N.4
Koes, R.5
-
35
-
-
0031127329
-
Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins
-
Sainz, M.B., Grotewold, E., and Chandler, V.L. (1997). Evidence for direct activation of an anthocyanin promoter by the maize C1 protein and comparison of DNA binding by related Myb domain proteins. Plant Cell 9, 611-625.
-
(1997)
Plant Cell
, vol.9
, pp. 611-625
-
-
Sainz, M.B.1
Grotewold, E.2
Chandler, V.L.3
-
36
-
-
0032696653
-
A mutation in the pale aleurone color1 gene identifies a novel regulator of the maize anthocyanin pathway
-
Selinger, D.A., and Chandler, V.L. (1999). A mutation in the pale aleurone color1 gene identifies a novel regulator of the maize anthocyanin pathway. Plant Cell 11, 5-14.
-
(1999)
Plant Cell
, vol.11
, pp. 5-14
-
-
Selinger, D.A.1
Chandler, V.L.2
-
37
-
-
0036790390
-
A WD-repeat-contalning putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens
-
Sompornpallin, K., Makita, Y., Yamazaki, M., and Saito, K. (2002). A WD-repeat-contalning putative regulatory protein in anthocyanin biosynthesis in Perilla frutescens. Plant Mol. Biol. 50, 485-495.
-
(2002)
Plant Mol. Biol.
, vol.50
, pp. 485-495
-
-
Sompornpallin, K.1
Makita, Y.2
Yamazaki, M.3
Saito, K.4
-
38
-
-
0033791934
-
Anthocyaninl of petunia encodes a basic helix-loop-helix protein that directly activates transcription of structural anthocyanin genes
-
Spelt, C., Quattrocchio, F., Mol, J.N., and Koes, R. (2000). anthocyaninl of petunia encodes a basic helix-loop-helix protein that directly activates transcription of structural anthocyanin genes. Plant Cell 12, 1619-1632.
-
(2000)
Plant Cell
, vol.12
, pp. 1619-1632
-
-
Spelt, C.1
Quattrocchio, F.2
Mol, J.N.3
Koes, R.4
-
39
-
-
0028464820
-
Flavonoids can protect maize DNA from the induction of ultraviolet radiation damage
-
Stapleton, A.E., and Walbot, V. (1994). Flavonoids can protect maize DNA from the induction of ultraviolet radiation damage. Plant Physiol. 105, 881-889.
-
(1994)
Plant Physiol.
, vol.105
, pp. 881-889
-
-
Stapleton, A.E.1
Walbot, V.2
-
40
-
-
0002985022
-
Developmental differences in action of r and b alleles in maize
-
Styles, E.D., Ceska, O., and Seah, K.T. (1973). Developmental differences in action of r and b alleles in maize. Can. J. Genet. Cytol. 15, 59-72.
-
(1973)
Can. J. Genet. Cytol.
, vol.15
, pp. 59-72
-
-
Styles, E.D.1
Ceska, O.2
Seah, K.T.3
-
41
-
-
0024692289
-
Mu transposable elements are structurally diverse and distributed throughout the genus Zea
-
Talbert, L.E., Patterson, G.I., and Chandler, V.L. (1989). Mu transposable elements are structurally diverse and distributed throughout the genus Zea. J. Mol. Evol. 29, 28-39.
-
(1989)
J. Mol. Evol.
, vol.29
, pp. 28-39
-
-
Talbert, L.E.1
Patterson, G.I.2
Chandler, V.L.3
-
42
-
-
0033165574
-
The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein
-
Walker, A.R., Davison, P.A., Bolognesi-Winfield, A.C., James, C.M., Srinivasan, N., Blundell, T.L., Esch, J.J., Marks, M.D., and Gray, J.C. (1999). The TRANSPARENT TESTA GLABRA1 locus, which regulates trichome differentiation and anthocyanin biosynthesis in Arabidopsis, encodes a WD40 repeat protein. Plant Cell 11, 1337-1350.
-
(1999)
Plant Cell
, vol.11
, pp. 1337-1350
-
-
Walker, A.R.1
Davison, P.A.2
Bolognesi-Winfield, A.C.3
James, C.M.4
Srinivasan, N.5
Blundell, T.L.6
Esch, J.J.7
Marks, M.D.8
Gray, J.C.9
-
43
-
-
0142244006
-
Isolation of RNA from Wx and wx Endosperms
-
M. Freeling and V. Walbot, eds (New York, NY: Springer-Verlag)
-
Wessler, S.R. (1994). Isolation of RNA from Wx and wx Endosperms. In The Maize Handbook, M. Freeling and V. Walbot, eds (New York, NY: Springer-Verlag), pp. 545-546.
-
(1994)
The Maize Handbook
, pp. 545-546
-
-
Wessler, S.R.1
|