Novel approach for deriving genome wide SNP analysis data from archived blood spots

BMC Research Notes

Volumn 5, Issue , 2012, Pages

  Fowler, Katie E ^a   Reitter, Chris P ^b   Walling, Grant A ^c   Griffin, Darren K ^a  

^a UNIVERSITY OF KENT   (United Kingdom)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^c Southburn   (United Kingdom)

Author keywords

DNA extraction; FTA WhatmanTM cards; Single nucleotide polymorphism; SNP; STR PCR; WGA; Whole genome amplification

Indexed keywords

ANIMALIA; BACTERIA (MICROORGANISMS); SUS;

PRIMER DNA;

ANIMAL; ARTICLE; BLOOD; GENETIC ASSOCIATION; HUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; BASE SEQUENCE; BLOOD; DNA PRIMERS; GENOME-WIDE ASSOCIATION STUDY; HUMANS; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 84866106501     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-5-503     Document Type: Article

References (22)

1. A two-step procedure for extracting genomic DNA from dried blood spots on filter paper for polymerase chain reaction amplification. Zhou H, Hickford JGH, Fang Q, Anal Biochem 2006 354 1 159 161 10.1016/j.ab.2006.03.042 16643836 (Pubitemid 43816384)
2. Rapid Method for Screening Dried Blood Samples on Filter Paper for Human Immunodeficiency Virus Type 1 DNA. Panteleeff DD, John G, Nduati E, Mbori-Ngacha D, Richardson B, Kreiss J, Overbaugh J, Clin Microbiol 1999 37 2 350 353 (Pubitemid 29056402)
3. Rapid and effective processing of blood specimens for diagnostic PCR using filter paper and Chelex-100. Polski M, Kimzey S, Percival RW, Grosso LE, Mol Pathol 1998 51 4 215 217 10.1136/mp.51.4.215 9893748 (Pubitemid 28394271)
4. Short report: Rapid DNA extraction from archive blood spots on filter paper for genotyping of Plasmodium falciparum. Bereczky S, et al. Am J Trop Med Hyg 2005 72 3 249 251 15772315 (Pubitemid 41278870)
5. Application of FTA technology to extraction of sperm DNA from mixed body fluids containing semen. Fujita Y, Kubo S-I, Leg Med 2006 8 1 43 47 10.1016/j.legalmed.2005.06.007 (Pubitemid 41803050)
6. Using FTA cards to store avian blood samples for genetic studies. Their application in sex determination. Gutiérrez Corchero F, et al. Mol Ecol Notes 2002 2 1 75 77
7. Long-term storage and safe retrieval of DNA from microorganisms for molecular analysis using FTA matrix cards. Rajendram D, et al. J Microbiol Methods 2006 67 3 582 592 10.1016/j.mimet.2006.05.010 16859786 (Pubitemid 44633478)
8. Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies. Lee AS, et al. Hum Mol Genet 2008 17 8 1127 10.1093/hmg/ddn002 18180252 (Pubitemid 351494184)
9. The Pig Genome Project Has Plenty to Squeal about. Fan B, Gorbach D, Rothschild M, Cytogenet Genome Res 2011 134 1 9 18 10.1159/000324043 21304247
10. An algorithm for determining the origin of trisomy and the positions of chiasmata from SNP genotype data. Gabriel AS, et al. Chromosome Res 2011 19 2 155 163 10.1007/s10577-010-9181-4 21225334
11. Array CGH on human first polar bodies suggests that non-disjunction is not the predominant mechanism leading to aneuploidy. Gabriel AS, et al. J Med Genet 2011 48 7 433 10.1136/jmg.2010.088070 21617258
12. Karyomapping: a universal method for genome wide analysis of genetic disease based on mapping crossovers between parental haplotypes. Handyside AH, et al. J Med Genet 2010 47 10 651 10.1136/jmg.2009.069971 19858130
13. Single nucleotide polymorphisms as tools in human genetics. Gray IC, Campbell DA, Spurr NK, Hum Mol Genet 2000 9 16 2403 10.1093/hmg/9.16.2403 11005795
14. Studying human mutations by sperm typing: instability of CAG trinucleotide repeats in the human androgen receptor gene. Zhang L, et al. Nat Genet 1994 7 4 531 535 10.1038/ng0894-531 7951325 (Pubitemid 24308342)
15. SNiPer: improved SNP genotype calling for Affymetrix 10 K GeneChip microarray data. Huentelman M, et al. BMC Genomics 2005 6 1 149 10.1186/1471-2164-6-149 16262895 (Pubitemid 41631794)
16. FTA Nucleic Acid Collection, Storage and Purification http://www.whatman.com/FTANucleicAcidCollectionStorageandPurification.aspx. 23023191
17. Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. Ramos AM, et al. PLoS One 2009 4 8 6524 10.1371/journal.pone.0006524 19654876
18. Genome-Wide Association Study Identifies Loci for Body Composition and Structural Soundness Traits in Pigs. Fan B, et al. PLoS One 2011 6 2 14726 10.1371/journal.pone.0014726 21383979
19. A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6. Duijvesteijn N, et al. BMC Genet 2010 11 1 42 20487517
20. Avian influenza surveillance with FTA Cards: Field Methods, Biosafety and Transportation Issues Solved. Kraus RHS, et al. Journal of Visualized Experiments 2011 54 2832 21847074
21. Simple and rapid detection of the porcine reproductive and respiratory syndrome virus from pig whole blood using filter paper. Inoue R, et al. J Virol Methods 2007 141 1 102 106 10.1016/j.jviromet.2006.11.030 17188757 (Pubitemid 46290668)
22. Evaluation of different sources of DNA for use in genome wide studies and forensic application. Al Safar HS, et al. Appl Microbiol Biotechnol 2011 89 3 807 815 10.1007/s00253-010-2926-3 20978755