Colorimetric detection with aptamer-gold nanoparticle conjugates: Effect of aptamer length on response

Journal of Nanoparticle Research

Volumn 14, Issue 10, 2012, Pages

  Chávez, Jorge L ^a   MacCuspie, Robert I ^b   Stone, Morley O ^b   Kelley Loughnane, Nancy ^a  

^a AIR FORCE RESEARCH LABORATORY   (United States)

^b NATIONAL INSTITUTE OF STANDARDS AND TECHNOLOGY   (United States)

Author keywords

Aggregation kinetics; Aptamer; Colorimetric; Gold nanoparticles; Nanoparticles stability; Riboflavin detection

Indexed keywords

COLORIMETRY; FIBER OPTIC SENSORS; LIGHT SCATTERING; METAL NANOPARTICLES; STABILITY;

AGGREGATION KINETICS; APTAMER SEQUENCES; APTAMERS; COLORIMETRIC; COLORIMETRIC DETECTION; NANOPARTICLE CONJUGATE; SENSING RESPONSE; SEQUENCE MODIFICATION;

GOLD NANOPARTICLES;

APTAMER; GOLD NANOPARTICLE; RIBOFLAVIN; RIBOFLAVIN BINDING APTAMER; UNCLASSIFIED DRUG;

ARTICLE; BINDING SITE; CHEMICAL ANALYSIS; CHEMICAL INTERACTION; CHEMICAL MODIFICATION; CHEMICAL STRUCTURE; COLORIMETRY; CONTROLLED STUDY; IN VITRO STUDY; LIGHT SCATTERING; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; ULTRAVIOLET RADIATION;

EID: 84866030224     PISSN: 13880764     EISSN: 1572896X     Source Type: Journal    
DOI: 10.1007/s11051-012-1166-0     Document Type: Article

References (38)

1. Alivasatos AP, Johnsson KP, Peng X, Wilson TE, Loweth CJ, Bruchez MP Jr, Schultz PG (1996) Organization of 'nanocrystal molecules' using DNA. Nature 382:609-611
2. Brown KA, Park S, Hamad-Schifferli K (2008) Nucleotidesurface interactions in DNA-modified Au-nanoparticle conjugates: Sequence effects on reactivity and hybridization. J Phys Chem C 112:7517-7521
3. Chávez JL, Lyon W, Kelley-Loughnane N, Stone MO (2010) Theophylline detection using an aptamer and DNA-gold nanoparticle conjugates. Biosens Bioelectron 26:23-28
4. Chen S-J, Huang Y-F, Huang C-C, Lee K-H, Lin Z-H, Chang H-T (2008) Colorimetric determination of urinary adenosine using aptamer-modified gold nanoparticles. Biosens Bioelectron 23:1749-1753
5. Collet JR, Cho EJ, Ellington AD (2005) Production and processing of aptamer microarrays. Methods 37:4-15
6. Elghanian R, Storhoff JJ, Mucic RC, Letsinger RL, Mirkin CA (1997) Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles. Science 277:1078-1081
7. Ellington AD, Szostak JW (1990) In vitro selection of RNA molecules that bind specific ligands. Nature 346: 818-822
8. Giljohann DA, Seferos DS, Daniel WL, Massich MD, Patel PC, Mirkin CA (2010) Gold nanoparticles for biology and medicine. Angew Chem Int Ed 49:3280-3294
9. Hackley VA, Clogston JD (2007) Measuring the Size of Nanoparticles in Aqueous Media Using Batch-Mode Dynamic Light Scattering, NIST-NCL Joint Assay Protocol PCC-1
10. Hagen JA, Kim SN, Bayraktaroglu B, Leedy K, Chávez JL, Kelley-Loughnane N, Naik RR, Stone MO (2011) Biofunctionalized zinc oxide field effect transistors for selective sensing of riboflavin with current modulation. Sensors 11:6645-6655
11. Iliuk AB, Hu L, Tao WA (2011) Aptamer in bioanalytical applications. Anal Chem 83:4440-4452
12. Katilius E, Flores C, Woodbury NW (2007) Exploring the sequence space of a DNA aptamer using microarrays. Nucleic Acids Res 35:7626-7635
13. Kimura-Suda H, Petrovykh DY, Tarlov MJ, Whitman LJ (2003) Base-dependent competitive adsorption of single-stranded DNA on gold. J Am Chem Soc 125:9014-9015
14. Lauhon CT, Szostak JW (1995) RNA aptamers that bind flavin and nicotinamide redox cofactors. J Am Chem Soc 117:1246-1257
15. Li H, Rothberg L (2004) Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles. Proc Natl Acad Sci USA 101:14036-14039
16. Liu J, Lu Y (2006a) Fast colorimetric sensing of adenosine and cocaine based on a general sensor design involving aptamers and nanoparticles. Angew Chem Int Ed 45:90-94
17. Liu J, Lu Y (2006b) Preparation of aptamer-linked gold nanoparticle purple aggregates for colorimetric sensing of analytes. Nat Protoc 1:246-252
18. Liu J, Lu Y (2007) Non-base pairing DNA provides a new dimension for controlling aptamer-linked nanoparticles and sensors. J Am Chem Soc 129:8634-8643
19. Mannironi C, Di Nardo A, Fruscoloni P, Tocchini-Valentini GP (1997) In vitro selection of dopamine RNA ligands. Biochemistry 36:9726-9734
20. Pavlov V, Xiao Y, Shlyahovsky B, Willner I (2004) Aptamerfunctionalized Au nanoparticles for the amplified optical detection of thrombin. J Am Chem Soc 126:11768-11769
21. Prigodich AE, Lee O-S, Daniel WL, Seferos DS, Schatz GC, Mirkin CA (2010) Tailoring DNA structure to increase target hybridization kinetics on surfaces. J Am Chem Soc 132:10638-10641
22. Rosi NL, Mirkin CA (2005) Nanostructures in biodiagnostics. Chem Rev 105:1547-1562
23. Ruff KM, Snyder T, Liu DR (2010) Enhanced functional potential of nucleic acid aptamer libraries patterned to increase secondary structure. J Am Chem Soc 132:9453-9464
24. Safavi A, Karimi MA, Hormozi Nezhad MR (2005) Flow injection analysis of riboflavin with chemiluminescence detection using a N-halo compounds-luminol system. Luminescence 20:170-175
25. Sandström P, Boncheva M, Akerman B (2003) Nonspecific and thiol-specific binding of DNA to gold nanoparticles. Langmuir 19:7537-7543
26. Sapsford KE, Tyner KM, Dair BJ, Deschamps JR, Medintz IL (2011) Analyzing nanomaterial bioconjugates: A review of current and emerging purification and characterization techniques. Anal Chem 83:4453-4488
27. Schreiner SM, Hatch AL, Shudy DF, Howard DV, Howell C, Zhao J, Koelsch P, Zharnikov M, Petrovykh DM, Opdahl A (2011) Impact of DNA-surface interactions on the stability of DNA hybrids. Anal Chem 83:4288-4295
28. Storhoff JJ, Elghanian R, Mirkin CA, Letsinger RL (2002) Sequence-dependent stability of DNA-modified gold nanoparticles. Langmuir 18:6666-6670
29. Tuerk C, Gold L (1990) Systematic evolution of ligands by exponential enrichment: rNA ligands to bacteriophage T4 DNA polymerase. Science 249:505-510
30. Vinas P, Balsalobre N, López-Erroz C, Hernández-Cordoba M (2004) Liquid chromatographic analysis of riboflavin vitamers in foods using fluorescence detection. Agric Food Chem 52:1789-1794
31. Wang L, Liu X, Hu X, Song S, Fan C (2006) Unmodified gold nanoparticles as a colorimetric probe for potassium DNA aptamers. Chem Commun 3780-3782
32. Wang J, Meng W, Zheng X, Liu S, Li G (2009) Combination of aptamer with gold nanoparticles for electrochemical signal amplification: Application to sensitive detection of plateletderived growth factor. Biosens Bioelectron 24:1598-1602
33. Wei H, Li B, Li J, Wang E, Dong S (2007) Simple and sensitive aptamer-based colorimetric sensing of protein using unmodified gold nanoparticle probes. Chem Commun 3735-3737
34. Wolf LK, Gao Y, Georgiadis RM (2004) Sequence-dependent DNA immobilization: Specific versus nonspecific contributions. Langmuir 20:3357-3361
35. Zhao W, Chiuman W, Lam JCF, McManus SA, Chen W, Cui Y, Pelton R, Brook MA, Li Y (2008) DNA aptamer folding on gold nanoparticles: From colloid chemistry to biosensors. J Am Chem Soc 130:3610-3618
36. Zheng Y, Wang Y, Yang X (2011) Aptamer-based colorimetric biosensing of dopamine using unmodified gold nanoparticles. Sens Actuat B 156:95-99
37. Zook JM, MacCuspie RI, Locascio LE, Halter MD, Elliott JT (2011) Stable nanoparticle aggregates/agglomerates of different sizes and the effect of their size on hemolytic cytotoxicity. Nanotoxicology 5:517-530
38. Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acid Res 31:3406-3415