Extensive genetic diversity in Iranian pomegranate (Punica granatum L.) germplasm revealed by microsatellite markers

Scientia Horticulturae

Volumn 146, Issue , 2012, Pages 104-114

  alamuti, Mehrbanoo Kazemi ^a   Zeinalabedini, Mehrshad ^a   Derazmahalleh, Mahsa Mousavi ^a   RoodbarShojaie, Taha ^a   Irandoost, Hashem Poor ^a   Zahravi, Mehdi ^a   Vazifehshenas, Mohammad ^b   Ebrahimi, Mohammad Ali ^c   Nekouei, Sayed Mojtaba Khayam ^a   Salekdeh, Ghasem Hossini ^a   Mardi, Mohsen ^a  

^a SEED AND PLANT IMPROVEMENT INSTITUTE   (Iran)

^b Research Center of Agriculture of Yazd   (Iran)

^c PAYAME NOOR UNIVERSITY   (Iran)

Author keywords

Fluorescent; Genetic variability; Microsatellite; Pomegranate; Structure

Indexed keywords

ALLELE; CULTIVAR; DICOTYLEDON; FRUIT; GENETIC ANALYSIS; GENETIC MARKER; GENETIC RESOURCE; GENETIC VARIATION; GERMPLASM; HETEROZYGOSITY; PLANT BREEDING; POLYMORPHISM;

IRAN;

LYTHRACEAE; PUNICA GRANATUM;

EID: 84865997896     PISSN: 03044238     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.scienta.2012.07.029     Document Type: Article

References (33)

1. Akbarpour V., Hemmati K., Sharifani M. Physical and chemical properties of pomegranate (Punica granatum L.) fruit in maturation stage. American-Eurasian J. Agric. & Environ. Sci. 2009, 6:411-416.
2. Awamleh H., Hassawi D., Migdadi H., Brake M. Molecular characterization of pomegranate (Punica granatum L.) landraces grown in Jordan using amplified fragment length polymorphism markers. Biotechnology 2009, 8:316-322.
3. Behzadi shahre babaki H. Distributation and Diversity of Pomegranate Cultivars in Iran 1998, Agriculture Education Publication, Tehran, p. 226.
4. Currò S., Caruso M., Distefano G., Gentile A., La Malfa S. New microsatellite loci for pomegranate. Punica granatum (Lythraceae). Am. J. Bot. 2010, 97:e58-e60.
5. Durgaç C., özgen M., Simsek Ö., Aka Kaçar Y., Ki{dotless}yga Y., çelebi S., Gündüz K., Serçe S. Molecular and pomological diversity among pomegranate (Punica granatum L.) cultivars in Eastern Mediterranean region of Turkey. Afr. J. Biotechnol. 2008, 7:1294-1301.
6. Ebrahimi S., Sayed-Tabatabaei B.E., Sharifnabi B. Microsatellite isolation and characterization in pomegran-ate (Punica granatum L.). Iran. J. Biotechnol. 2010, 8:156-163.
7. Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 2005, 14:2611-2620.
8. Falush D., Stephens M., Pritchard J.K. Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 2003, 164:1567-1587.
9. Hasnaoui N., Mars M., Chibani J., Trifi M. Molecular polymorphisms in Tunisian pomegranate (Punica granatum L.) as revealed by RAPD fingerprints. Diversity 2010, 2:107-114.
10. Hedrick P.W. Perspective: highly variable loci and their interpretation in evolution and conservation. Evolution 1999, 313-318.
11. Hijmans R., Guarino L., Cruz M., Rojas E. Computer tools for spatial analysis of plant genetic resources data: 1. DIVA-GIS. Plant Genet. Resour. Newsletter 2001, 15-19.
12. Huson D.H., Bryant D. Application of phylogenetic networks in evolutionary studies. Mol. Biol. Evol. 2006, 23:254-267.
13. Islam A., Yari{dotless}lgac T., özgüven A.I. Pomological and morphological characteristics of pomegranates growth in eastern blacksea region. Acta Hortic. 2009, 818:121-124.
14. Jbir R., Hasnaoui N., Mars M., Marrakchi M., Trifi M. Characterization of Tunisian pomegranate (Punica granatum L.) cultivars using amplified fragment length polymorphism analysis. Sci. Hort. 2008, 115:231-237.
15. Kim K.W., Chung H.K., Cho G.T., Ma K.H., Chandrabalan D., Gwag J.G., Kim T.S., Cho E.G., Park Y.J. PowerCore: a program applying the advanced M strategy with a heuristic search for establishing core sets. Bioinformatics 2007, 23:2155-2162.
16. Koohi-Dehkordi M., Sayed-Tabatabaei B., Yamchi A., Danesh-Shahraki A. Microsatellite markers in pomegranate. Acta Hortic. 2006, 179-184.
17. Liu, J., 2006. Powermarker: a powerful software for marker data analysis.
18. Moslemi M., Zahravi M., Khaniki G.B. Genetic diversity and population genetic structure of pomegranate (Punica granatum L.) in Iran using AFLP markers. Sci. Hortic. 2010, 126:441-447.
19. Noormohammadi Z., Parvini F., Sheidai M., Vazifeshenas M. Further study of morphological and molecular diversity in 18 pomegranate landraces of Iran. Gene Conserve 2010, 38:189-200.
20. Pirseyedi S.M., Valizadehghan S., Mardi M., Ghaffari M.R., Mahmoodi P., Zahravi M., Zeinalabedini M., Nekoui S.M.K. Isolation and characterization of novel microsatellite markers in pomegranate (Punica granatum L.). Int. J. Mol. Sci. 2010, 11(5):2010-2016.
21. Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
22. Ranade S., Rana T., Narzary D. SPAR profiles and genetic diversity amongst pomegranate (Punica granatum L.) genotypes. Physiol. Mol. Biol. Plants 2009, 15:61-70.
23. Sheidai M., Saneghi A., Shahreiyari Z., Noormohammadi Z., Farahanei F., Tabatabaei-Ardakanei S.Z. RAPD and cytogenetic study of some pomegranate (Punica granatum L.) cultivars. Caryologia 2008, 61:68-73.
24. Song Z., Xu X., Wang B., Chen J., Lu B.R. Genetic diversity in the northernmost Oryza rufipogon populations estimated by SSR markers. Theor. Appl. Genet. 2003, 107:1492-1499.
25. Soriano J.M., Zuriaga E., Rubio P., Llácer G., Infante R., Badenes M.L. Development and characterization of microsatellite markers in pomegranate (Punica granatum L.). Molecular Breeding 2011, 27:119-128.
26. Stover E., Mercure E.W. The pomegranate: a new look at the fruit of paradise. HortScience 2007, 42:1088-1092.
27. Tanksley S.D. Molecular markers in plant breeding. Plant Mol. Biol. Rep. 1983, 1:3-8.
28. Van Hintum T.J.L., Brown A.H.D., Spillane C., Hodkin T. Core collections of plant genetic resources. Bioversity International 2000.
29. Varasteh F., Arzani K., Zamani Z., Mohseni A. Evaluation of the most important fruit characteristics of some commercial pomegranate (Punica granatum L.) cultivars grown in Iran. Acta Hortic. 2006, 103-108. 818, 103-108.
30. Varshney R.K., Graner A., Sorrells M.E. Genic microsatellite markers in plants: features and applications. Trends Biotechnol. 2005, 23:48-55.
31. Virk P., Newbury H., Jackson M., Ford-Lloyd B. Are mapped or anonymous markers more useful for assessing genetic diversity?. Theor. Appl. Genet. 2000, 100:607-613.
32. Weir B. Genetic Data Analysis II: Methods for Discrete Population Genetic Data 1996, Sinauer Associates, Sunderland, MA.
33. Zamani Z., Sarkhosh A., Fatahi R., Ebadi A. Genetic relationships among pomegranate genotypes studied by fruit characteristics and RAPD markers. J. Hortic. Sci. Biotechnol. 2007, 82:11-18.