-
1
-
-
0032694256
-
Yersinia enterocolitica: overview and epidemiologic correlates
-
Bottone EJ. Yersinia enterocolitica: overview and epidemiologic correlates. Microb Infect 1999, 1:323-333.
-
(1999)
Microb Infect
, vol.1
, pp. 323-333
-
-
Bottone, E.J.1
-
2
-
-
0031002852
-
Yersinia enterocolitica: The Charisma Continues
-
172919, 9105754
-
Bottone EJ. Yersinia enterocolitica: The Charisma Continues. Clin Microbiol Rev 1997, 10(2):257-276. 172919, 9105754.
-
(1997)
Clin Microbiol Rev
, vol.10
, Issue.2
, pp. 257-276
-
-
Bottone, E.J.1
-
3
-
-
0031793277
-
The Virulence Plasmid of Yersinia, an Antihost Genome
-
98948, 9841674
-
Cornelis GR, Boland A, Boyd AP, Geuijen C, Iriarte M, Neyt C, Sory MP, Stainier I. The Virulence Plasmid of Yersinia, an Antihost Genome. Microbiol Mol Biol Rev 1998, 62(4):1315-1352. 98948, 9841674.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, Issue.4
, pp. 1315-1352
-
-
Cornelis, G.R.1
Boland, A.2
Boyd, A.P.3
Geuijen, C.4
Iriarte, M.5
Neyt, C.6
Sory, M.P.7
Stainier, I.8
-
5
-
-
0020555355
-
Construction of a mobilizable Yersinia enterocolitica virulence plasmid
-
217748, 6874644
-
Heesemann J, Laufs R. Construction of a mobilizable Yersinia enterocolitica virulence plasmid. J Bacteriol 1983, 155:761-767. 217748, 6874644.
-
(1983)
J Bacteriol
, vol.155
, pp. 761-767
-
-
Heesemann, J.1
Laufs, R.2
-
6
-
-
4644368846
-
The Yersinia high-pathogenicity island (HPI): evolutionary and functional aspects
-
10.1016/j.ijmm.2004.06.026, 15493818
-
Schubert S, Rakin A, Heesemann J. The Yersinia high-pathogenicity island (HPI): evolutionary and functional aspects. Int J Med Microbiol 2004, 294:83-94. 10.1016/j.ijmm.2004.06.026, 15493818.
-
(2004)
Int J Med Microbiol
, vol.294
, pp. 83-94
-
-
Schubert, S.1
Rakin, A.2
Heesemann, J.3
-
7
-
-
0020692630
-
Virulence and phenotypic characterization of Yersinia enterocolitica isolated from humans in the United States
-
272587, 6826697
-
Kay BA, Wachsmuth K, Gemski P, Feeley JC, Quan TJ, Brenner DJ. Virulence and phenotypic characterization of Yersinia enterocolitica isolated from humans in the United States. J Clin Microbiol 1983, 17:128-138. 272587, 6826697.
-
(1983)
J Clin Microbiol
, vol.17
, pp. 128-138
-
-
Kay, B.A.1
Wachsmuth, K.2
Gemski, P.3
Feeley, J.C.4
Quan, T.J.5
Brenner, D.J.6
-
8
-
-
78650887475
-
Yersinia enterocolitica infection among children aged less than 12 years: a case-control study
-
10.1016/j.ijid.2010.09.010, 21131221
-
El Qouqa IA, El Jarou MA, Samaha AS, Al Afifi AS, Al Jarousha AM. Yersinia enterocolitica infection among children aged less than 12 years: a case-control study. Int J Infect Dis 2011, 15(1):e48-e53. 10.1016/j.ijid.2010.09.010, 21131221.
-
(2011)
Int J Infect Dis
, vol.15
, Issue.1
-
-
El Qouqa, I.A.1
El Jarou, M.A.2
Samaha, A.S.3
Al Afifi, A.S.4
Al Jarousha, A.M.5
-
9
-
-
77953342666
-
Epidemiology of reported Yersinia enterocolitica infections in Germany, 2001-2008
-
10.1186/1471-2458-10-337, 2905328, 20546575
-
Rosner BM, Stark K, Werber D. Epidemiology of reported Yersinia enterocolitica infections in Germany, 2001-2008. BMC Public Health 2010, 10:337. 10.1186/1471-2458-10-337, 2905328, 20546575.
-
(2010)
BMC Public Health
, vol.10
, pp. 337
-
-
Rosner, B.M.1
Stark, K.2
Werber, D.3
-
10
-
-
0019512737
-
Characterization of Plasmids and Plasmid-Associated Determinants of Yersinia enterocolitica Pathogenesis
-
351377, 7216474, SF
-
Portnoy DA, Moseley SL, SF. Characterization of Plasmids and Plasmid-Associated Determinants of Yersinia enterocolitica Pathogenesis. Infect Immun 1981, 31(2):775-782. 351377, 7216474.
-
(1981)
Infect Immun
, vol.31
, Issue.2
, pp. 775-782
-
-
Portnoy, D.A.1
Moseley, S.L.2
-
11
-
-
0015719054
-
New strain of Yersinia enterocolitica pathogenic for rodents
-
379952, 4588191
-
Carter PB, Varga CF, Keet EE. New strain of Yersinia enterocolitica pathogenic for rodents. Appl Microbiol 1973, 26(6):1016-1018. 379952, 4588191.
-
(1973)
Appl Microbiol
, vol.26
, Issue.6
, pp. 1016-1018
-
-
Carter, P.B.1
Varga, C.F.2
Keet, E.E.3
-
12
-
-
33845999944
-
The Complete Genome Sequence and Comparative Genome Analysis of the High Pathogenicity Yersinia enterocolitica Strain 8081
-
10.1371/journal.pgen.0020206, 1698947, 17173484
-
Thomson NR, Howard S, Wren BW, Holden MTG, Crossman L, Challis GL, Churcher C, Mungall K, Brooks K, Chillingworth T, Feltwell T, Abdellah Z, Hauser H, Jagels K, Maddison M, Moule S, Sanders M, Whitehead S, Quail MA, Dougan G, Parkhill J, Prentice MB. The Complete Genome Sequence and Comparative Genome Analysis of the High Pathogenicity Yersinia enterocolitica Strain 8081. PLoS Genet 2006, 2(12):e206. 10.1371/journal.pgen.0020206, 1698947, 17173484.
-
(2006)
PLoS Genet
, vol.2
, Issue.12
-
-
Thomson, N.R.1
Howard, S.2
Wren, B.W.3
Holden, M.T.G.4
Crossman, L.5
Challis, G.L.6
Churcher, C.7
Mungall, K.8
Brooks, K.9
Chillingworth, T.10
Feltwell, T.11
Abdellah, Z.12
Hauser, H.13
Jagels, K.14
Maddison, M.15
Moule, S.16
Sanders, M.17
Whitehead, S.18
Quail, M.A.19
Dougan, G.20
Parkhill, J.21
Prentice, M.B.22
more..
-
13
-
-
79959917325
-
Yersinia enterocolitica palearctica serobiotype O:3/4 - a successful group of emerging zoonotic pathogens
-
Batzilla J, Antonenka U, Höper D, Heesemann J, Rakin A. Yersinia enterocolitica palearctica serobiotype O:3/4 - a successful group of emerging zoonotic pathogens. BMC Genomics 2011, 6(12):348.
-
(2011)
BMC Genomics
, vol.6
, Issue.12
, pp. 348
-
-
Batzilla, J.1
Antonenka, U.2
Höper, D.3
Heesemann, J.4
Rakin, A.5
-
14
-
-
79953885164
-
Complete Genome Sequence of a Yersinia enterocolitica "Old World" (3/O:9) Strain and Comparison with the "New World" (1B/O:8) Strain
-
10.1128/JCM.01921-10, 3122819, 21325549
-
Wang X, Li Y, Jing H, Ren Y, Zhou Z, Wang S, Kan B, Xu J, Wang L. Complete Genome Sequence of a Yersinia enterocolitica "Old World" (3/O:9) Strain and Comparison with the "New World" (1B/O:8) Strain. J Clin Microbiol 2011, 49(4):1251-1259. 10.1128/JCM.01921-10, 3122819, 21325549.
-
(2011)
J Clin Microbiol
, vol.49
, Issue.4
, pp. 1251-1259
-
-
Wang, X.1
Li, Y.2
Jing, H.3
Ren, Y.4
Zhou, Z.5
Wang, S.6
Kan, B.7
Xu, J.8
Wang, L.9
-
15
-
-
78650757812
-
The sequence of the pYV virulence plasmid from Yersinia enterocolitica strain WA-314 biogroup 1B serotype O:8
-
10.1016/j.plasmid.2010.09.004, 20875451
-
Oberhettinger P, Schütz M, Raddatz G, Keller H, Autenrieth IB, Linke D. The sequence of the pYV virulence plasmid from Yersinia enterocolitica strain WA-314 biogroup 1B serotype O:8. Plasmid 2011, 65:20-24. 10.1016/j.plasmid.2010.09.004, 20875451.
-
(2011)
Plasmid
, vol.65
, pp. 20-24
-
-
Oberhettinger, P.1
Schütz, M.2
Raddatz, G.3
Keller, H.4
Autenrieth, I.B.5
Linke, D.6
-
16
-
-
0032568984
-
Type IV pili, transient bacterial aggregates, and virulence of enteropathogenic Escherichia coli
-
10.1126/science.280.5372.2114, 9641917
-
Bieber D, Ramer SW, Wu CY, Toru MWJT, Fernandez R, Schoolnik GK. Type IV pili, transient bacterial aggregates, and virulence of enteropathogenic Escherichia coli. Science 1998, 280:2114-2118. 10.1126/science.280.5372.2114, 9641917.
-
(1998)
Science
, vol.280
, pp. 2114-2118
-
-
Bieber, D.1
Ramer, S.W.2
Wu, C.Y.3
Toru, M.W.J.T.4
Fernandez, R.5
Schoolnik, G.K.6
-
17
-
-
0034115689
-
Salmonella enterica serovar typhi uses type IVB pili to enter human intestinal epithelial cells
-
10.1128/IAI.68.6.3067-3073.2000, 97533, 10816445
-
Zhang XL, Tsui ISM, Yip CMC, Fung AWY, Wong DKH, Dai X, Yang Y, Hackett J, Morris C. Salmonella enterica serovar typhi uses type IVB pili to enter human intestinal epithelial cells. Infect Immun 2000, 68(6):3067-3073. 10.1128/IAI.68.6.3067-3073.2000, 97533, 10816445.
-
(2000)
Infect Immun
, vol.68
, Issue.6
, pp. 3067-3073
-
-
Zhang, X.L.1
Tsui, I.S.M.2
Yip, C.M.C.3
Fung, A.W.Y.4
Wong, D.K.H.5
Dai, X.6
Yang, Y.7
Hackett, J.8
Morris, C.9
-
18
-
-
0030957263
-
The tcp gene cluster of Vibrio cholerae
-
10.1016/S0378-1119(97)00036-X, 9224875
-
Manning PA. The tcp gene cluster of Vibrio cholerae. Gene 1997, 192:63-70. 10.1016/S0378-1119(97)00036-X, 9224875.
-
(1997)
Gene
, vol.192
, pp. 63-70
-
-
Manning, P.A.1
-
19
-
-
17044403057
-
Type II restriction endonucleases: structure and mechanism
-
10.1007/s00018-004-4513-1, 15770420
-
Pingouda A, Fuxreiterb M, Pingouda V, Wendea W. Type II restriction endonucleases: structure and mechanism. Cell Mol Life Sci 2005, 62:685-707. 10.1007/s00018-004-4513-1, 15770420.
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 685-707
-
-
Pingouda, A.1
Fuxreiterb, M.2
Pingouda, V.3
Wendea, W.4
-
20
-
-
0036016788
-
Cooperation and competition in mismatch repair: very short-patch repair and methyl-directed mismatch repair in Escherichia coli
-
Bhagwat AS, Lieb M. Cooperation and competition in mismatch repair: very short-patch repair and methyl-directed mismatch repair in Escherichia coli. Molec Microbiol 2002, 44(6):1421-1428.
-
(2002)
Molec Microbiol
, vol.44
, Issue.6
, pp. 1421-1428
-
-
Bhagwat, A.S.1
Lieb, M.2
-
21
-
-
33947368999
-
Colicin Biology
-
10.1128/MMBR.00036-06, 1847374, 17347522
-
Cascales E, Buchanan SK, Duché D, Kleanthous C, Lloubès R, Postle K, Riley M, Slatin S, Cavard D. Colicin Biology. Microbiol Mol Biol Rev 2007, 71(1):158-229. 10.1128/MMBR.00036-06, 1847374, 17347522.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, Issue.1
, pp. 158-229
-
-
Cascales, E.1
Buchanan, S.K.2
Duché, D.3
Kleanthous, C.4
Lloubès, R.5
Postle, K.6
Riley, M.7
Slatin, S.8
Cavard, D.9
-
22
-
-
77956844803
-
Yersinia enterocolitica Infection and tcaA-Dependent Killing of Caenorhabditis elegans
-
10.1128/AEM.01274-10, 2937509, 20639372
-
Spanier B, Starke M, Higel F, Scherer S, Fuchs TM. Yersinia enterocolitica Infection and tcaA-Dependent Killing of Caenorhabditis elegans. Appl Environ Microbiol 2010, 76(18):6277-3285. 10.1128/AEM.01274-10, 2937509, 20639372.
-
(2010)
Appl Environ Microbiol
, vol.76
, Issue.18
, pp. 6277-13285
-
-
Spanier, B.1
Starke, M.2
Higel, F.3
Scherer, S.4
Fuchs, T.M.5
-
23
-
-
79960258056
-
Structures and functions of autotransporter proteins in microbial pathogens
-
Benz I, Schmidt MA. Structures and functions of autotransporter proteins in microbial pathogens. Int J Med Microbiol 2011, 301(1):461-468.
-
(2011)
Int J Med Microbiol
, vol.301
, Issue.1
, pp. 461-468
-
-
Benz, I.1
Schmidt, M.A.2
-
24
-
-
77955371675
-
Autotransporters of Escherichia coli: a sequencebased characterization
-
10.1099/mic.0.039024-0, 20447993
-
Wells TM, Totsika M, Schembri MA. Autotransporters of Escherichia coli: a sequencebased characterization. Microbiology 2010, 156:2459-2469. 10.1099/mic.0.039024-0, 20447993.
-
(2010)
Microbiology
, vol.156
, pp. 2459-2469
-
-
Wells, T.M.1
Totsika, M.2
Schembri, M.A.3
-
25
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
10.1038/nmeth.1701, 21959131
-
Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 2011, 8:785-786. 10.1038/nmeth.1701, 21959131.
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
26
-
-
35848952765
-
Protein secretion in gram-negative bacteria via the autotransporter pathway
-
10.1146/annurev.micro.61.080706.093233, 17506669
-
Dautin N, Bernstein HD. Protein secretion in gram-negative bacteria via the autotransporter pathway. Annu Rev Microbiol 2007, 61:89-112. 10.1146/annurev.micro.61.080706.093233, 17506669.
-
(2007)
Annu Rev Microbiol
, vol.61
, pp. 89-112
-
-
Dautin, N.1
Bernstein, H.D.2
-
27
-
-
60149111839
-
Pili in Gram-negative and Gram-positive bacteria - structure, assembly and their role in disease
-
10.1007/s00018-008-8477-4, 18953686
-
Proft T, Baker EN. Pili in Gram-negative and Gram-positive bacteria - structure, assembly and their role in disease. Cell Mol Life Sci 2009, 66:613-635. 10.1007/s00018-008-8477-4, 18953686.
-
(2009)
Cell Mol Life Sci
, vol.66
, pp. 613-635
-
-
Proft, T.1
Baker, E.N.2
-
28
-
-
58649109819
-
The helical content of the YscP molecular ruler determines the length of the Yersinia injectisome
-
Wagner S, Sorg I, Degiacomi M, Journet L, Dal Peraro M, Cornelis GR. The helical content of the YscP molecular ruler determines the length of the Yersinia injectisome. Molec Microbiol 2009, 71(3):692-701.
-
(2009)
Molec Microbiol
, vol.71
, Issue.3
, pp. 692-701
-
-
Wagner, S.1
Sorg, I.2
Degiacomi, M.3
Journet, L.4
Dal Peraro, M.5
Cornelis, G.R.6
-
29
-
-
80052322412
-
Deletion of internal structured repeats increases the stability of a leucine-rich repeat protein, YopM
-
10.1016/j.bpc.2011.06.004, 21764506
-
Vieux EF, Barrick D. Deletion of internal structured repeats increases the stability of a leucine-rich repeat protein, YopM. Biophys Chem 2011, 159:152-161. 10.1016/j.bpc.2011.06.004, 21764506.
-
(2011)
Biophys Chem
, vol.159
, pp. 152-161
-
-
Vieux, E.F.1
Barrick, D.2
-
30
-
-
0034799370
-
Whole genome plasticity in pathogenic bacteria
-
10.1016/S1369-5274(00)00250-2, 11587932
-
Dobrindt U, Hacker J. Whole genome plasticity in pathogenic bacteria. Curr Opin Microbiol 2001, 4:550-557. 10.1016/S1369-5274(00)00250-2, 11587932.
-
(2001)
Curr Opin Microbiol
, vol.4
, pp. 550-557
-
-
Dobrindt, U.1
Hacker, J.2
-
31
-
-
3343005223
-
YAPI, a new Yersinia pseudotuberculosis pathogenicity island
-
10.1128/IAI.72.8.4784-4790.2004, 470613, 15271940
-
Collyn F, Billault A, Mullet C, Simonet M, Marceau M. YAPI, a new Yersinia pseudotuberculosis pathogenicity island. Infect Immun 2004, 72(8):4784-4790. 10.1128/IAI.72.8.4784-4790.2004, 470613, 15271940.
-
(2004)
Infect Immun
, vol.72
, Issue.8
, pp. 4784-4790
-
-
Collyn, F.1
Billault, A.2
Mullet, C.3
Simonet, M.4
Marceau, M.5
-
32
-
-
3242887518
-
Using the Genome to Understand Pathogenicity
-
Field D, Hughes J, Moxon ER. Using the Genome to Understand Pathogenicity. Methods Mol Biol 2004, 266:261-287.
-
(2004)
Methods Mol Biol
, vol.266
, pp. 261-287
-
-
Field, D.1
Hughes, J.2
Moxon, E.R.3
-
33
-
-
84856014525
-
Yersinia enterocolitica: Pathogenesis, virulence and antimicrobial resistance
-
10.1016/j.eimc.2011.07.017, 22019131
-
Fàbrega A, Vila J. Yersinia enterocolitica: Pathogenesis, virulence and antimicrobial resistance. Enferm Infecc Microbiol Clin 2012, 30(1):24-32. 10.1016/j.eimc.2011.07.017, 22019131.
-
(2012)
Enferm Infecc Microbiol Clin
, vol.30
, Issue.1
, pp. 24-32
-
-
Fàbrega, A.1
Vila, J.2
-
34
-
-
0038719729
-
The Yersinia Virulence Factor YopM Forms a Novel Protein Complex with Two Cellular Kinases
-
10.1074/jbc.M301226200, 12626518
-
McDonald C, Vacratsis PO, Bliska JB, Dixon JE. The Yersinia Virulence Factor YopM Forms a Novel Protein Complex with Two Cellular Kinases. J Biol Chem 2003, 278(20):18514-18523. 10.1074/jbc.M301226200, 12626518.
-
(2003)
J Biol Chem
, vol.278
, Issue.20
, pp. 18514-18523
-
-
McDonald, C.1
Vacratsis, P.O.2
Bliska, J.B.3
Dixon, J.E.4
-
35
-
-
77952678232
-
The C-Terminal Tail of Yersinia pseudotuberculosis YopM Is Critical for Interacting with RSK1 and for Virulence
-
10.1128/IAI.00141-10, 2876544, 20368345
-
McCoy MW, Marré ML, Lesser CF, Mecsas J. The C-Terminal Tail of Yersinia pseudotuberculosis YopM Is Critical for Interacting with RSK1 and for Virulence. Infect Immun 2010, 78(6):2584-2598. 10.1128/IAI.00141-10, 2876544, 20368345.
-
(2010)
Infect Immun
, vol.78
, Issue.6
, pp. 2584-2598
-
-
McCoy, M.W.1
Marré, M.L.2
Lesser, C.F.3
Mecsas, J.4
-
36
-
-
77955293133
-
Delineation of Regions of the Yersinia YopM Protein Required for Interaction with the RSK1 and PRK2 Host Kinases and Their Requirement for Interleukin-10 Production and Virulence
-
10.1128/IAI.00269-10, 2916259, 20515922
-
McPhee JB, Mena P, Bliska JB. Delineation of Regions of the Yersinia YopM Protein Required for Interaction with the RSK1 and PRK2 Host Kinases and Their Requirement for Interleukin-10 Production and Virulence. Infect Immun 2010, 78(8):3529-3539. 10.1128/IAI.00269-10, 2916259, 20515922.
-
(2010)
Infect Immun
, vol.78
, Issue.8
, pp. 3529-3539
-
-
McPhee, J.B.1
Mena, P.2
Bliska, J.B.3
-
37
-
-
20044380517
-
Bacterial Injectisomes: Needle Length Does Matter
-
10.1126/science.1107679, 15731447
-
Mota LJ, Journet L, Sorg I, Agrain C, Cornelis GR. Bacterial Injectisomes: Needle Length Does Matter. Science 2005, 307(5713):1278. 10.1126/science.1107679, 15731447.
-
(2005)
Science
, vol.307
, Issue.5713
, pp. 1278
-
-
Mota, L.J.1
Journet, L.2
Sorg, I.3
Agrain, C.4
Cornelis, G.R.5
-
38
-
-
0031881560
-
Detection of pathogenic Yersinia enterocolitica using a digoxigenin labelled probe targeting the yst gene
-
10.1046/j.1365-2672.1998.00344.x, 9633642
-
Durisin MD, Ibrahim A, Griffiths MW. Detection of pathogenic Yersinia enterocolitica using a digoxigenin labelled probe targeting the yst gene. J Appl Microbiol 1998, 84:285-292. 10.1046/j.1365-2672.1998.00344.x, 9633642.
-
(1998)
J Appl Microbiol
, vol.84
, pp. 285-292
-
-
Durisin, M.D.1
Ibrahim, A.2
Griffiths, M.W.3
-
39
-
-
40549120596
-
The RAST Server: Rapid Annotations using Subsystems Technology
-
10.1186/1471-2164-9-75, 2265698, 18261238
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. The RAST Server: Rapid Annotations using Subsystems Technology. BMC Genomics 2008, 9:75. 10.1186/1471-2164-9-75, 2265698, 18261238.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
40
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
146525, 9023104
-
Lowe TM, Eddy SR. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucl Acids Res 1997, 25:955-964. 146525, 9023104.
-
(1997)
Nucl Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
41
-
-
79961109150
-
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
-
10.1186/1471-2164-12-402, 3163573, 21824423
-
Alikhan NF, Petty NK, Ben Zakour NL, Beatson SA. BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons. BMC Genomics 2011, 12:402. 10.1186/1471-2164-12-402, 3163573, 21824423.
-
(2011)
BMC Genomics
, vol.12
, pp. 402
-
-
Alikhan, N.F.1
Petty, N.K.2
Ben Zakour, N.L.3
Beatson, S.A.4
-
42
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
10.1093/nar/gki866, 1251668, 16214803
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crécy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 2005, 33(17):5691-5702. 10.1093/nar/gki866, 1251668, 16214803.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.17
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
Cohoon, M.6
de Crécy-Lagard, V.7
Diaz, N.8
Disz, T.9
Edwards, R.10
Fonstein, M.11
Frank, E.D.12
Gerdes, S.13
Glass, E.M.14
Goesmann, A.15
Hanson, A.16
Iwata-Reuyl, D.17
Jensen, R.18
Jamshidi, N.19
Krause, L.20
Kubal, M.21
Larsen, N.22
more..
-
43
-
-
77956193448
-
ProgressiveMauve: Multiple Genome Alignment with Gene Gain. Loss and Rearrangement
-
10.1371/journal.pone.0011147, 2892488, 20593022
-
Darling AE, Mau B, Perna NT. ProgressiveMauve: Multiple Genome Alignment with Gene Gain. Loss and Rearrangement. PLoS One 2010, 5(6):e11147. 10.1371/journal.pone.0011147, 2892488, 20593022.
-
(2010)
PLoS One
, vol.5
, Issue.6
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
44
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
10.1093/bioinformatics/btm404, 17846036
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Clustal W and Clustal X version 2.0. Bioinformatics 2007, 23:2947-2948. 10.1093/bioinformatics/btm404, 17846036.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
45
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. Basic local alignment search tool. J Mol Biol 1990, 215(3):403-410.
-
(1990)
J Mol Biol
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
46
-
-
78651285748
-
CDD: a Conserved Domain Database for the functional annotation of proteins
-
10.1093/nar/gkq1189, 3013737, 21109532
-
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH. CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res 2011, 39:D225-229. 10.1093/nar/gkq1189, 3013737, 21109532.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Marchler-Bauer, A.1
Lu, S.2
Anderson, J.B.3
Chitsaz, F.4
Derbyshire, M.K.5
DeWeese-Scott, C.6
Fong, J.H.7
Geer, L.Y.8
Geer, R.C.9
Gonzales, N.R.10
Gwadz, M.11
Hurwitz, D.I.12
Jackson, J.D.13
Ke, Z.14
Lanczycki, C.J.15
Lu, F.16
Marchler, G.H.17
Mullokandov, M.18
Omelchenko, M.V.19
Robertson, C.L.20
Song, J.S.21
Thanki, N.22
Yamashita, R.A.23
Zhang, D.24
Zhang, N.25
Zheng, C.26
Bryant, S.H.27
more..
-
47
-
-
33644876020
-
Pfam: clans, web tools and services
-
10.1093/nar/gkj149, 1347511, 16381856
-
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Res 2006, 34:D247-251. 10.1093/nar/gkj149, 1347511, 16381856.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Böckler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
48
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
49
-
-
0043123111
-
RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences
-
10.1093/nar/gkg609, 169015, 12824361
-
Wernersson R, Pedersen AG. RevTrans: Multiple alignment of coding DNA from aligned amino acid sequences. Nucleic Acids Res 2003, 31(13):3537-3539. 10.1093/nar/gkg609, 169015, 12824361.
-
(2003)
Nucleic Acids Res
, vol.31
, Issue.13
, pp. 3537-3539
-
-
Wernersson, R.1
Pedersen, A.G.2
-
50
-
-
34547489084
-
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
-
10.1080/10635150701472164, 17654362
-
Talavera G, Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56(4):564-577. 10.1080/10635150701472164, 17654362.
-
(2007)
Syst Biol
, vol.56
, Issue.4
, pp. 564-577
-
-
Talavera, G.1
Castresana, J.2
-
51
-
-
0000122573
-
Phylip: Phylogeny Inference Package (Version 3.2)
-
Felsenstein J. Phylip: Phylogeny Inference Package (Version 3.2). Cladistics 1989, 5:164-166.
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
|