Genetic diversity of the edible mushroom Pleurotus sp. by amplified fragment length polymorphism

Current Microbiology

Volumn 65, Issue 4, 2012, Pages 438-445

  Pawlik, Anna ^a   Janusz, Grzegorz ^a   Koszerny, Joanna ^a   Małek, Wanda ^a   Rogalski, Jerzy ^a  

^a MARIA CURIE SK ODOWSKA UNIVERSITY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; RESTRICTION ENDONUCLEASE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; ASIA; EDIBLE MUSHROOM; EUROPE; FUNGAL STRAIN; FUNGUS GROWTH; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; GENETIC VARIABILITY; LENTINUS SAJOR-CAJU; NONHUMAN; PHYLOGENETIC TREE; PLEUROTUS; PLEUROTUS ERYNGII; PLEUROTUS OSTREATUS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; CLUSTER ANALYSIS; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA FINGERPRINTING; DNA PRIMERS; DNA, FUNGAL; GENETIC VARIATION; MOLECULAR TYPING; MYCOLOGICAL TYPING TECHNIQUES; MYCOLOGY; PLEUROTUS;

BASIDIOMYCOTA; FUNGI; PLEUROTUS; PLEUROTUS ERYNGII; PLEUROTUS OSTREATUS; PLEUROTUS SAJOR-CAJU;

EID: 84865960579     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-012-0175-7     Document Type: Article

References (38)

1. Ajith TA, Janardhanan KK (2007) Indian medicinal mushrooms as a source of antioxidant and antitumor agents. J Clin Biochem Nutr 40:157-162
2. Bao DP, Ishihara H, Mori N, Kitamoto Y (2004) Phylogenetic analysis of oyster mushrooms (Pleurotus spp.) based on restriction fragment length polymorphisms of the 50 portion of 26S rDNA. J Wood Sci 50:169-176
3. Blears MJ, De Grandis SA, Lee H, Trevors JT (1998) Amplified fragment length polymorphism (AFLP): a review of the procedure and its applications. J Ind Microbiol Biotechnol 21:99-114
4. Borges MJ, Azevedo MO, Bonatelli JR, Felipe MSS, Astolfi-Filho S (1990) A practical method for the preparation of total DNA from filamentous fungi. Fungal Genetic Newslett 10:11
5. Brown JKM (1996) The choice of molecular marker methods for population genetic studies of plant pathogens. New Phytol 133:183-195
6. Chang ST (1999) World production of cultivated edible and medicinal mushrooms in 1997 with emphasis on Lentinus edodes (Berk.) Sing in China. Int J Med Mushrooms 1:291-300
7. Cohen R, Persky L, Hadar Y (2002) Biotechnological applications and potential of wood-degrading mushrooms of the genus Pleurotus. Appl Microbiol Biotechnol 58:582-594
8. Ellstrand NC, Elam DR (1993) Population genetic consequences of small population-size -implications for plant conservation. Annu Rev Ecol Systemat 24:217-242
9. Gunde-Cimerman N, Cimerman A (1995) Pleurotus fruiting bodies contain the inhibitor of 3-hydroxy-3-methylglutarylcoenzyme A reductase-lovastatin. Exp Mycol 19:1-6
10. Hampl V, Pavlicek A, Flegr J (2001) Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with the freeware program FreeTree: application to trichomonad parasites. Int J Syst Evol Microbiol 51:731-735
11. Hamrick JL, Godt MJ (1989) Allozyme diversity in plant species. In: Brown AHD, Clegg MT, Weir BS, Kahler AL (eds) Plant population genetics, breeding and germplasm resources. Sinauer, Sunderland, pp 43-63
12. Hseu RS, Wang HH, Wang HF, Moncalvo JM (1996) Differentiation and grouping of isolates of the Ganoderma lucidum complex by random amplified polymorphic DNA-PCR compared with grouping on the basis of internal transcribed spacer sequences. Appl Environ Microbiol 62:1354-1363
13. Hynes SS, Chaudhry O, Providenti MA, Smith ML (2006) Development of AFLP-derived, functionally specific markers for environmental persistence studies of fungal strains. Can J Microbiol 52:451-461
14. Iracabal B, Zervakis G, Labarere J (1995) Molecular systematics of the genus Pleurotus -analysis of restriction polymorphisms in ribosomal DNA. Microbiology 141:1479-1490
15. Jaccard P (1912) The distribution of the flora in the alpine zone. New Phytol 11:37-50
16. Janssen P, Coopman R, Huys G, Swings J, Bleeker M, Vos P, Zabeau M, Kersters K (1996) Evaluation of the DNA fingerprinting method AFLP as an new tool in bacterial taxonomy. Microbiology 142:1881-1893
17. Karwasra SS, Mukherjee AK, Swain SC, Mohapatra T, Sharma RP (2002) Evaluation of RAPD, ISSR and AFLP markers for characterization of the loose smut fungus Ustilago tritici. J Plant Biochem Biotechnol 11:99-103
18. Kauserud H, Schmidt O, Elfstrand M, Hogberg N (2004) Extremely low AFLP variation in the European dry rot fungus (Serpula lacrymans): implications for self/nonself-recognition. Mycol Res 108:1264-1270
19. Lindeberg G, Holm G (1952) Occurrence of tyrosinase and laccase in fruit bodies and mycelia of some Hymenomycetes. Physiol Plant 5:100-114
20. Majer D, Mithen R, Lewis BG, Vos P, Oliver RP (1996) The use of AFLP fingerprinting for the detection of genetic variation in fungi. Mycol Res 100:1107-1111
21. Mizutani T, Inatomi S, Inazu A, Kawahara E (2010) Hypolipidemic effect of Pleurotus eryngii extract in fat-loaded mice. J Nutr Sci Vitaminol 56:48-53
22. Moussa TAA (2009) Molecular characterization of the phenol oxidase (pox2) gene from the ligninolytic fungus Pleurotus ostreatus. FEMS Microbiol Lett 298:131-142
23. Mueller UG, Lipari SE, Milgroom MG (1996) Amplified fragment length polymorphism (AFLP) fingerprinting of symbiotic fungi cultured by the fungus-growing ant Cyphomyrmex minutus. Mol Ecol 5:119-122
24. Mueller UG, Wolfenbarger LL (1999) AFLP genotyping and fingerprinting. Trends Ecol Evol 14:389-394
25. Nei M, Li WH (1979) Mathematical model for studying genetic variations in terms of restriction endonucleases. Proc Natl Acad Sci USA 76:5269-5273
26. Okuda Y, Murakami S, Matsumoto T (2009) A genetic linkage map of Pleurotus pulmonarius based on AFLP markers, and localization of the gene region for the sporeless mutation. Genome 52:438-446
27. Perez-Boada M, Ruiz-Duenas FJ, Pogni R, Basosi R, Choinowski T, Martinez MJ, Piontek K, Martinez AT (2005) Versatile peroxidase oxidation of high redox potential aromatic compounds: site-directed mutagenesis, spectroscopic and crystallographic investigation of three long-range electron transfer pathways. J Mol Biol 354:385-402
28. Selegean M, Putz MV, Rugea T (2009) Effect of the polysaccharide extract from the edible mushroom Pleurotus ostreatus against infectious bursal disease virus. Int J Mol Sci 10:3616-3634
29. Suazo A, Hall HG (1999) Modification of the AFLP protocol applied to honey bee (Apis mellifera L.) DNA. Biotechniques 26(704-705):708-709
30. Terashima K, Matsumoto T (2004) Strain typing of shiitake (Lentinula edodes) cultivars by AFLP analysis, focusing on a heat-dried fruiting body. Mycoscience 45:79-82
31. Terefework Z, Kaijalainen S, Lindstrom K (2001) AFLP fingerprinting as a tool to study the genetic diversity of Rhizobium galegae isolated from Galega orientalis and Galega officinalis. J Biotechnol 91:169-180
32. Tyrka M (2002) A simplified AFLP method for fingerprinting of common wheat (Triticum aestivum L.) cultivars. J Appl Genet 43:131-143
33. Urbanelli S, Della Rosa V, Punelli F, Porretta D, Reverberi M, Fabbri AA, Fanelli C (2007) DNA-fingerprinting (AFLP and RFLP) for genotypic identification in species of the Pleurotus eryngii complex. Appl Microbiol Biotechnol 74:592-600
34. Valsangiacomo C, Baggi F, Gaia V, Balmelli T, Peduzzi R, Piffaretti JC (1995) Use of amplified fragment length polymorphism in molecular typing of Legionella pneumophila and application to epidemiological studies. J Clin Microbiol 33: 1716-1719
35. Vilgalys R, Moncalvo JM, Liou SR, Volovcek M (1996) Recent advances in molecular systematics of the genus Pleurotus. In: Royse DJ (ed) Mushroom biology and mushroom products. Pennsylvania State University Press, University Park, pp 91-101
36. Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP -a new technique for DNA-fingerprinting. Nucleic Acids Res 23:4407-4414
37. Zervakis G, Balis C (1996) A pluralistic approach in the study of Pleurotus species with emphasis on compatibility and physiology of the European morphotaxa. Mycol Res 100:717-731
38. Zervakis GI, Moncalvo JM, Vilgalys R (2004) Molecular phylogeny, biogeography and speciation of the mushroom species Pleurotus cystidiosus and allied taxa. Microbiology 150:715-726