A simplified AFLP method for fingerprinting of common wheat (Triticum aestivum L.) cultivars

Journal of Applied Genetics

Volumn 43, Issue 2, 2002, Pages 131-143

  Tyrka, Mirosław ^a  

^a UNIVERSITY OF LIFE SCIENCES IN LUBLIN   (Poland)

Author keywords

AFLP; Cultivar identification; Genetic diversity; Molecular markers; Triticum aestivum

Indexed keywords

ARTICLE; DNA FINGERPRINTING; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GENETICS; METHODOLOGY; PHYLOGENY; WHEAT;

DNA FINGERPRINTING; PHYLOGENY; POLYMORPHISM, GENETIC; TRITICUM; VARIATION (GENETICS);

EID: 0036043015     PISSN: 12341983     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (41)

1. ARSENIUK E., CZEMBOR H.J., SOWA W., KRYSIAK H., ZIMNY J. (1995). Genotypowa reakcja pszenżyta, pszenicy i żyta na inokulacjç Stagonospora (=Septoria) nodorum i Septoria tritici w warunkach kontrolowanych. [Genotypic reaction of triticale, wheat and rye to inoculation with Stagonospora (=Septoria) nodorum and Septoria tritici under controlled conditions]. Biul. IHAR. 195/196: 209-217.
2. BARBOSA-NETO J.F., HERNANDEZ C.M., O'-DONOGHUE L.S., SORRELLS M.E. (1997). Precision of genetic relationship estimates based on molecular markers. Euphytica 98: 59-67.
3. BARRETT B.A., KIDWELL K.K. (1998). AFLP-based genetic diversity assessment among wheat cultivars from the Pacific Northwest. Crop Sci. 38: 1261-1271.
4. BARRETT B. A., KIDWELL K.K., FOX P.N. (1998). Comparison of AFLP-based genetic diversity assessment methods using wheat cultivars from the Pacific Northwest. Crop Sci. 38: 1271-1278.
5. BEUNINGEN L.T. VAN BUSCH R.H. (1997). Genetic diversity among North American spring wheat cultivars: III. Cluster analysis based on quantitative morphological traits. Crop Sci. 37:981-988.
6. BRYAN G.J., COLLINS A.J., STEPHENSON P., ORRY A., SMITH J.B., GALE M.D. (1997). Isolation and characterisation of microsatellites from hexaploid bread wheat. Theor. Appl. Genet. 94: 557-563.
7. BURKHAMER R.L., LANNING S.P., MARTENS R.J., MARTIN J.M., TALBERT L.E. (1998). Predicting progeny variance from parental divergence in hard red spring wheat. Crop Sci. 38: 243-248.
8. CHEN H.B., MARTIN J.M., LAVIN M., TALBERT L.E. (1994). Genetic diversity in hard red spring wheat based on sequence tagged site PCR markers. Crop Sci. 34: 1628-1632.
9. CHEUNG W.Y., MOORE G., MONEY T.A., GALE M.D. (1992). Hpall library indicates 'methylation-free islands' in wheat and barley. Theor. Appl. Genet. 84: 739-746.
10. COX T.S., LOOKHART G.L, WALKER D.E., HARRELL L.G., ALBERS L.D., RODGERS D.M. (1985). Genetic relationships among hard red winter wheat cultivars as evaluated by pedigree analysis and gliadin polyacrylamide gel electrophoretic patterns. Crop Sci. 25: 1058-1063.
11. DEVOS K.M., GALE M.D. (1992). The use of randomly amplified polymorphic DNA markers in wheat. Theor. Appl. Genet. 84: 567-572.
12. DWEIKAT I., MACKENZIE S., LEVY M., OHM H. (1993). Pedigree assessment using RAPD-DGGE in cereal crop species. Theor. Appl. Genet. 85: 497-505.
13. IQUBAL M.J., RAYBURN A.L. (1995). Identification of the 1RS rye chromosomal segment in wheat by RAPD analysis. Theor. Appl. Genet. 91: 1048-1053.
14. JOSHI C.P., NGYUEN H.T. (1993). RAPD (randomly amplified polymorphic DNA) analysis based intervarietal genetic relationships among hexaploid wheats. Plant Sci. 93: 95-103.
15. KIM H.S., WARD R.W. (1997). Genetic diversity in Eastern U.S. soft winter wheat (Triticum aestivum L. em Thell.) based on RFLPs and coefficient of parentage. Theor. Appl. Genet. 94: 472-479.
16. LAW J.R., DONINI P., KOEBNER R.M.D., REEVES J.C., COOKE R.J. (1997). Statistical methods for assessing and interpreting genetic diversity. In : Advances in biometrical genetics (Krajewski P., Kaczmarek Z., eds.). Proc. 10th Meeting of EUCARPIA Section Biometrics in Plant Breeding, Poznań, Poland 14-16 May 1997: 191-196.
17. LEE S.J., PENNER G.A., DEVOS K.M. (1995). Characterization of loci containing microsatellite sequences among Canadian wheat cultivars. Genome 38: 1037-1040.
18. LOOKHART G., BEAN S. (1995). A fast method for wheat cultivar differentiation using capillary zone electrophoresis. Cereal Chem. 72: 42-47.
19. MARTIN J.M., TALBERT L.E., LANNING S.P., BLAKE N.K. (1995). Hybrid performance in wheat as related to parental diversity. Crop Sci. 35: 104-108.
20. METAKOVSKY E.V., BRANLARD G. (1998). Genetic diversity of French common wheat germplasm based on gliadin alleles. Theor. Appl. Genet. 96: 209-218.
21. MILLIGAN B.G. (1992). Plant DNA isolation. In: Molecular analysis of populations: a practical approach. IRL Press, Oxford, UK: 59-88.
22. NEI M., LI W.H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA 76: 5269-5273.
23. PAULL J.G., CHALMERS K.J., KARAKOUSIS A., KRETSCHMER J.M., MANNING S., LANGRIDGE P. (1998). Genetic diversity in Australian wheat varietes and breeding material based on RFLP data. Theor. Appl. Genet. 96: 435-446.
24. PEJIC I., AJMONE-MARSAN P., MORGANTE M., KOZUMPLICK V., CASTIGLIONI P., TARAMINO G., MOTTO M. (1998). Comparative analysis of genetic similarity among maize inbred lines detected by RFLPs, RAPDs, SSRs, and AFLPs. Theor. Appl. Genet. 97: 1248-1255.
25. PESTSOVA E., GANAL M.W., RÖDER M.S. (2000). Isolation and mapping of microsatellite markers specific for the D genome of bread wheat. Genome 43: 689-697.
26. PLASCHKE J., GANAL M.W., RÖDER M.S. (1995). Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor. Appl. Genet. 91: 1001-1007.
27. POWELL W., MORGANTE M., ANDRE C., HANAFEY M., VOGEL J., TINGEY S., RAFALSKI A. (1996). The comparison of RFLP, RAPD, AFLP and SSR (microsatellite) markers for germplasm analysis. Mol. Breed. 2: 225-238.
28. RANAMUKHAARACHCHI D.G., KANE M.E., GUY C.L., LI Q.B. (2000). Modified AFLP technique for rapid genetic characterization in plants. Biotechniques 29: 858-866.
29. RÖDER M.S., KORZUN V., WENDEHAKE K., PLASCHKE J. TIXIER M-H, LEROY P., GANAL M.W. (1998). A microsatellite map of wheat. Genetics 149: 2007-2023.
30. ROHLF F.J. (2001). NTSYS-pc numerical taxonomy and multivariate analysis system. Version 2.10q. Exeter Publishing Ltd., Setauket, N.Y.
31. SAWHNEY R.N., SHARMA J.B., SHARMA D.N. (1992). Genetic diversity for adult plant resistance to leaf rust (Puccinia recondita) in near-isogenic lines and in Indian wheats. Plant Breeding 109(3): 248-254.
32. SIEDLER H., MESSMER M.M., SCHACHERMAYR G.M., WINZELER H., WINZELER M., KELLER B. (1994). Genetic diversity in European wheat and spelt breeding material based on RFLP data. Theor. Appl. Genet. 88: 994-1003.
33. SPAGNOLETTI ZEULI P.L., QUALSET C.O. (1987). Geographical diversity for quantitative spike characters in world collection of durum wheat. Crop Sci. 34: 774-783.
34. SUAZO A., HALL H.G. (1999). Modification of the AFLP protocol applied to honey bee (Apis mellifera L.) DNA. Biotechniques 26: 704-709.
35. SUN Q., NI Z., LIU Z., GAO J., HUANG T. (1998). Genetic relationships and diversity among Tibetan wheat, common wheat and European spelt wheat revealed by RAPD markers. Euphytica 99: 205-211.
36. TALBERT L.E., BLAKE N.K., CHEE P.W., BLAKE T.K., MAGYAR G.M. (1994). Evaluation of "sequence tagged-site" PCR products as molecular markers in wheat. Theor. Appl. Genet. 87: 289-294.
37. VOS P., HOGERS R., BLEEKER M., REIJANS M., VAN DE LEE T., HORNES M., FRIJTERS A., POT J., PELEMAN J., KUIPER M., ZABEAU M. (1995). AFLP: a new technique for DNA fingerprinting. Nuc. Acids Res. 23: 4407-4414.
38. VUYLSTEKE M., MANK R., ANTONISE R., BASTIAANS E., SENIOR M.L., STUBER C.W., MELCHINGER A.E., LÜBBERSTEDT T., XXIA. C., STAM P., ZABEAU M., KUIPER M. (1999). Two high-density AFLP® linkage maps of Zea mays L.: analysis of distribution of AFLP markers. Theor. Appl. Genet. 99: 921-935.
39. WAUGH R., BONAR N., BAIRD E., THOMAS B., GRANER A., HAYES P., POWELL W. (1997). Homology of AFLP products in three mapping populations of barley. Mol. Gen. Genet. 255: 311-321.
40. WEINING S., LANGRIDGE P. (1991). Identification and mapping of polymorphisms in cereals based on the polymerase chain reaction. Theor. Appl. Genet. 82: 209-216.
41. YAP I.V., NELSON R. (1995). WinBoot: A program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrograms. IRRI Discussion Parer Series No. 14. IRRI, Los Baños, Philippines.