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Volumn 52, Issue 5, 2006, Pages 451-461

Development of AFLP-derived, functionally specific markers for environmental persistence studies of fungal strains

Author keywords

Canada domestic substances list (DSL); Canadian Environmental Protection Act (CEPA); Genetically modified organisms (GMO); Quantitative polymerase chain reaction (qPCR)

Indexed keywords

DNA; ECOLOGY; ENZYMES; EPIDEMIOLOGY; FUNGI; MORPHOLOGY; REAL TIME SYSTEMS; SOILS; SUSTAINABLE DEVELOPMENT;

EID: 33746585326     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/W05-140     Document Type: Article
Times cited : (10)

References (49)
  • 1
    • 0032736381 scopus 로고    scopus 로고
    • Precise detection and tracing of Trichoderma hamatum 382 in compost-amended potting mixes by using molecular markers
    • Abbasi, P.A., Miller, S.A., Meulia, T., Hoitink, H.A.J., and Kim, J.M. 1999. Precise detection and tracing of Trichoderma hamatum 382 in compost-amended potting mixes by using molecular markers. Appl. Environ. Microbiol. 65: 5421-5426.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5421-5426
    • Abbasi, P.A.1    Miller, S.A.2    Meulia, T.3    Hoitink, H.A.J.4    Kim, J.M.5
  • 3
    • 0041528199 scopus 로고    scopus 로고
    • Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting
    • Atkins, S.D., Clark, I.M., Sosnowska, D., Hirsch, P.R., and Kerry, B.R. 2003. Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting. Appl. Environ. Microbiol. 69: 4788-4793.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4788-4793
    • Atkins, S.D.1    Clark, I.M.2    Sosnowska, D.3    Hirsch, P.R.4    Kerry, B.R.5
  • 4
    • 0000256562 scopus 로고    scopus 로고
    • Comparison of AFLP fingerprints and ITS sequences as phylogenetic markers in Ustilaginomycetes
    • Bakkeren, G., Kronstad, J.W., and Levesque, C.A. 2000. Comparison of AFLP fingerprints and ITS sequences as phylogenetic markers in Ustilaginomycetes. Mycologia, 92: 510-521.
    • (2000) Mycologia , vol.92 , pp. 510-521
    • Bakkeren, G.1    Kronstad, J.W.2    Levesque, C.A.3
  • 5
    • 0348044482 scopus 로고    scopus 로고
    • An optimized method for Aspergillus niger spore production on natural carrier substrates
    • Bapat, P.M., Kundu, S., and Wangikar, P.P. 2003. An optimized method for Aspergillus niger spore production on natural carrier substrates. Biotechnol. Progress, 19: 1683-1688.
    • (2003) Biotechnol. Progress , vol.19 , pp. 1683-1688
    • Bapat, P.M.1    Kundu, S.2    Wangikar, P.P.3
  • 6
    • 1642385081 scopus 로고    scopus 로고
    • Production of toxic metabolites in Aspergillus niger, Aspergillus oryzae, and Trichoderma reesei: Justification of mycotoxin testing in food grade enzyme preparations derived from the three fungi
    • Blumenthal, C.Z. 2004. Production of toxic metabolites in Aspergillus niger, Aspergillus oryzae, and Trichoderma reesei: justification of mycotoxin testing in food grade enzyme preparations derived from the three fungi. Regul. Toxicol. Pharmacol. 39: 214-228.
    • (2004) Regul. Toxicol. Pharmacol. , vol.39 , pp. 214-228
    • Blumenthal, C.Z.1
  • 7
    • 12444309299 scopus 로고    scopus 로고
    • Use of amplified fragment length polymorphism analysis to identify medically important Candida spp., including C. dubliniensis
    • Borst, A., Theelen, B., Reinders, E., Boekhout, T., Fluit, A.C., and Savelkoul, P.H.M. 2003. Use of amplified fragment length polymorphism analysis to identify medically important Candida spp., including C. dubliniensis. J. Clin. Microbiol. 41: 1357-1362.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 1357-1362
    • Borst, A.1    Theelen, B.2    Reinders, E.3    Boekhout, T.4    Fluit, A.C.5    Savelkoul, P.H.M.6
  • 8
    • 0034954108 scopus 로고    scopus 로고
    • Soil fungi: Diversity and detection
    • Bridge, P., and Spooner, B. 2001. Soil fungi: diversity and detection. Plant Soil, 232: 147-154.
    • (2001) Plant Soil , vol.232 , pp. 147-154
    • Bridge, P.1    Spooner, B.2
  • 9
    • 0033765725 scopus 로고    scopus 로고
    • Identification of a universally primed-PCR-derived sequence-characterized amplified region marker for an antagonistic strain of Clonostachys rosea and development of a strain-specific PCR detection assay
    • Bulat, S.A., Lubeck, M., Alekhina, I.A., Jensen, D.F., Knudsen, I.M.B., and Lubeck, PS. 2000. Identification of a universally primed-PCR-derived sequence-characterized amplified region marker for an antagonistic strain of Clonostachys rosea and development of a strain-specific PCR detection assay. Appl. Environ. Microbiol. 66: 4758-4763.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4758-4763
    • Bulat, S.A.1    Lubeck, M.2    Alekhina, I.A.3    Jensen, D.F.4    Knudsen, I.M.B.5    Lubeck, P.S.6
  • 10
    • 0037314428 scopus 로고    scopus 로고
    • Strain-specific detection of introduced Beauveria bassiana in agricultural fields by use of sequence-characterized amplified region markers
    • Castrillo, L.A., Vandenberg, J.D., and Wraight, S.P. 2003. Strain-specific detection of introduced Beauveria bassiana in agricultural fields by use of sequence-characterized amplified region markers. J. Invertebr. Pathol. 82: 75-83.
    • (2003) J. Invertebr. Pathol. , vol.82 , pp. 75-83
    • Castrillo, L.A.1    Vandenberg, J.D.2    Wraight, S.P.3
  • 13
    • 0142028193 scopus 로고    scopus 로고
    • Detection of the biocontrol agent Colletotrichum coccodes (183088) from the target weed velvetleaf and from soil by strain-specific PCR markers
    • Dauch, A.L., Watson, A.K., and Jabaji-Hare, S.H. 2003. Detection of the biocontrol agent Colletotrichum coccodes (183088) from the target weed velvetleaf and from soil by strain-specific PCR markers. J. Microbiol. Methods, 55: 51-64.
    • (2003) J. Microbiol. Methods , vol.55 , pp. 51-64
    • Dauch, A.L.1    Watson, A.K.2    Jabaji-Hare, S.H.3
  • 14
    • 0033831427 scopus 로고    scopus 로고
    • Genotypic characterization of Bradyrhizobium strains nodulating small Senegalese legumes by 16S-23S rRNA intergenic gene spacers and amplified fragment length polymorphism fingerprint analyses
    • Doignon-Bourcier, F., Willems, A., Coopman, R., Laguerre, G., Gillis, M., and de Lajudie, P. 2000. Genotypic characterization of Bradyrhizobium strains nodulating small Senegalese legumes by 16S-23S rRNA intergenic gene spacers and amplified fragment length polymorphism fingerprint analyses. Appl. Environ. Microbiol. 66: 3987-3997.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 3987-3997
    • Doignon-Bourcier, F.1    Willems, A.2    Coopman, R.3    Laguerre, G.4    Gillis, M.5    De Lajudie, P.6
  • 16
    • 0034463293 scopus 로고    scopus 로고
    • The phylogenetics of mycotoxin and sclerotium production in Aspergillus flavus and Aspergillus oryzae
    • Geiser, D.M., Dorner, J.W., Horn, B.W., and Taylor, J.W. 2000. The phylogenetics of mycotoxin and sclerotium production in Aspergillus flavus and Aspergillus oryzae. Fungal Genet. Biol. 31: 169-179.
    • (2000) Fungal Genet. Biol. , vol.31 , pp. 169-179
    • Geiser, D.M.1    Dorner, J.W.2    Horn, B.W.3    Taylor, J.W.4
  • 17
    • 0033927311 scopus 로고    scopus 로고
    • A competitive PCR-based assay to quantify Verticillium tricorpus propagules in soil
    • Heinz, R.A., and Platt, H.W.B. 2000. A competitive PCR-based assay to quantify Verticillium tricorpus propagules in soil. Can. J. Plant Pathol. 22: 122-130.
    • (2000) Can. J. Plant Pathol. , vol.22 , pp. 122-130
    • Heinz, R.A.1    Platt, H.W.B.2
  • 18
    • 0035176710 scopus 로고    scopus 로고
    • Development of a strain-specific SCAR marker for the detection of Trichoderma atroviride 11, a biological control agent against soilborne fungal plant pathogens
    • Hermosa, M.R., Grondona, I., Diaz-Minguez, J.M., Iturriaga, E.A., and Monte, E. 2001. Development of a strain-specific SCAR marker for the detection of Trichoderma atroviride 11, a biological control agent against soilborne fungal plant pathogens. Curr. Genet. 38: 343-350.
    • (2001) Curr. Genet. , vol.38 , pp. 343-350
    • Hermosa, M.R.1    Grondona, I.2    Diaz-Minguez, J.M.3    Iturriaga, E.A.4    Monte, E.5
  • 19
    • 0035048418 scopus 로고    scopus 로고
    • Development of genetic markers for risk assessment of biological control agents
    • Hintz, W.E., Becker, E.M., and Shamoun, S.F. 2001. Development of genetic markers for risk assessment of biological control agents. Can. J. Plant Pathol. 23: 13-18.
    • (2001) Can. J. Plant Pathol. , vol.23 , pp. 13-18
    • Hintz, W.E.1    Becker, E.M.2    Shamoun, S.F.3
  • 20
    • 0023866522 scopus 로고
    • DNA probe method for the detection of specific microorganisms in the soil bacterial community
    • Holben, W.E., Jansson, J.K., Chelm, B.K., and Tiedje, J.M. 1988. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl. Environ. Microbiol. 54: 703-711.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 703-711
    • Holben, W.E.1    Jansson, J.K.2    Chelm, B.K.3    Tiedje, J.M.4
  • 21
    • 0003797496 scopus 로고    scopus 로고
    • Jansson, J.K., van Elsas, J.D., and Bailey, M.J. (Editors). Landes Bioscience, Georgetown, Tex.
    • Jansson, J.K., van Elsas, J.D., and Bailey, M.J. (Editors). 2000. Tracking genetically engineered microorganisms. Landes Bioscience, Georgetown, Tex.
    • (2000) Tracking Genetically Engineered Microorganisms
  • 22
    • 0036135677 scopus 로고    scopus 로고
    • Molecular fingerprinting of Clostridium difficile isolates: Pulsed-field gel electrophoresis versus amplified fragment length polymorphism
    • Klaassen, C.H.W., van Haren, H.A., and Horrevorts, A.M. 2002. Molecular fingerprinting of Clostridium difficile isolates: pulsed-field gel electrophoresis versus amplified fragment length polymorphism. J. Clin. Microbiol. 40: 101-104.
    • (2002) J. Clin. Microbiol. , vol.40 , pp. 101-104
    • Klaassen, C.H.W.1    Van Haren, H.A.2    Horrevorts, A.M.3
  • 24
    • 1242344658 scopus 로고    scopus 로고
    • Comparison of Aspergillus flavus and Aspergillus oryzae by amplified fragment length polymorphism
    • Lee, C.Z., Liou, G.Y., and Yuan, G.F. 2004. Comparison of Aspergillus flavus and Aspergillus oryzae by amplified fragment length polymorphism. Bot. Bull. Acad. Sin. 45: 61-68.
    • (2004) Bot. Bull. Acad. Sin. , vol.45 , pp. 61-68
    • Lee, C.Z.1    Liou, G.Y.2    Yuan, G.F.3
  • 25
    • 0033511309 scopus 로고    scopus 로고
    • The generation of specific DNA primers using random amplified polymorphic DNA and its application to Verticillium dahliae
    • Li, K.M., Rouse, D.I., Eyestone, E.J., and German, T.L. 1999. The generation of specific DNA primers using random amplified polymorphic DNA and its application to Verticillium dahliae. Mycol. Res. 103: 1361-1368.
    • (1999) Mycol. Res. , vol.103 , pp. 1361-1368
    • Li, K.M.1    Rouse, D.I.2    Eyestone, E.J.3    German, T.L.4
  • 26
    • 0141494430 scopus 로고    scopus 로고
    • AFLP: A useful tool for biodiversity conservation and management
    • Lucchini, V. 2003. AFLP: a useful tool for biodiversity conservation and management. Comptes Rendus Biologies. 326: S43-S48.
    • (2003) Comptes Rendus Biologies. , vol.326
    • Lucchini, V.1
  • 27
    • 0030324813 scopus 로고    scopus 로고
    • The use of AFLP fingerprinting for the detection of genetic variation in fungi
    • Majer, D., Mithen, R., Lewis, B.G., Vos, P., and Oliver, R.P. 1996. The use of AFLP fingerprinting for the detection of genetic variation in fungi. Mycol. Res. 100: 1107-1111.
    • (1996) Mycol. Res. , vol.100 , pp. 1107-1111
    • Majer, D.1    Mithen, R.2    Lewis, B.G.3    Vos, P.4    Oliver, R.P.5
  • 28
    • 10244260396 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism (AFLP) in soybean: Species diversity, inheritance, and near-isogenic line analysis Theor
    • Maughan, P.J., Maroof, M.A.S., Buss, G.R., and Huestis, G.M. 1996. Amplified fragment length polymorphism (AFLP) in soybean: species diversity, inheritance, and near-isogenic line analysis Theor. Appl. Genet. 93: 392-401.
    • (1996) Appl. Genet. , vol.93 , pp. 392-401
    • Maughan, P.J.1    Maroof, M.A.S.2    Buss, G.R.3    Huestis, G.M.4
  • 30
    • 1942424151 scopus 로고    scopus 로고
    • Sequence assessment of co-migrating AFLP (TM) bands in Echinacea - Implications for comparative biological studies
    • Mechanda, S.M., Baum, B.R., Johnson, D.A., and Arnason, J.T. 2004. Sequence assessment of co-migrating AFLP (TM) bands in Echinacea - implications for comparative biological studies. Genome, 47: 15-25.
    • (2004) Genome , vol.47 , pp. 15-25
    • Mechanda, S.M.1    Baum, B.R.2    Johnson, D.A.3    Arnason, J.T.4
  • 31
    • 0036201363 scopus 로고    scopus 로고
    • A mathematical method for determining genome divergence and species delineation using AFLP
    • Mougel, C., Thioulouse, J., Perriere, G., and Nesme, X. 2002. A mathematical method for determining genome divergence and species delineation using AFLP. Int. J. Syst. Evol. Microbiol. 52: 573-586.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 573-586
    • Mougel, C.1    Thioulouse, J.2    Perriere, G.3    Nesme, X.4
  • 33
    • 0023228563 scopus 로고
    • Cloning of the Ribob locus of Aspergillus Nidulans
    • Oakley, C.E., Weil, C.F., Kretz, P.L., and Oakley, B.R. 1987. Cloning of the Ribob locus of Aspergillus Nidulans. Gene. 53: 293-298.
    • (1987) Gene. , vol.53 , pp. 293-298
    • Oakley, C.E.1    Weil, C.F.2    Kretz, P.L.3    Oakley, B.R.4
  • 34
    • 8644276999 scopus 로고    scopus 로고
    • Determining the environmental fate of a filamentous fungus, Trichoderma reesei, in laboratory-contained intact soil-core microcosms using competitive PCR and viability plating
    • Providenti, M.A., Mautner, S. I., Chaudhry, O., Bombardier, M., Scroggins, R., Gregorich, E., and Smith, M.L. 2004. Determining the environmental fate of a filamentous fungus, Trichoderma reesei, in laboratory-contained intact soil-core microcosms using competitive PCR and viability plating. Can. J. Microbiol. 50: 623-631
    • (2004) Can. J. Microbiol. , vol.50 , pp. 623-631
    • Providenti, M.A.1    Mautner, S.I.2    Chaudhry, O.3    Bombardier, M.4    Scroggins, R.5    Gregorich, E.6    Smith, M.L.7
  • 37
    • 0141615055 scopus 로고    scopus 로고
    • Infection of barley roots by Chaetomium globosum: Evidence for a protective role of the exodermis
    • Reissinger, A., Winter, S., Steckelbroeck, S., Hartung, W., and Sikora, R.A. 2003. Infection of barley roots by Chaetomium globosum: evidence for a protective role of the exodermis. Mycol. Res. 107: 1094-1102.
    • (2003) Mycol. Res. , vol.107 , pp. 1094-1102
    • Reissinger, A.1    Winter, S.2    Steckelbroeck, S.3    Hartung, W.4    Sikora, R.A.5
  • 40
    • 0037368731 scopus 로고    scopus 로고
    • Molecular typing of Aspergillus ochraceus and construction of species specific SCAR-primers based on AFLP
    • Schmidt, H., Ehrmann, M., Vogel, R.E., Taniwaki, M.H., and Niessen, L. 2003. Molecular typing of Aspergillus ochraceus and construction of species specific SCAR-primers based on AFLP. Syst. Appl. Microbiol. 26: 138-146.
    • (2003) Syst. Appl. Microbiol. , vol.26 , pp. 138-146
    • Schmidt, H.1    Ehrmann, M.2    Vogel, R.E.3    Taniwaki, M.H.4    Niessen, L.5
  • 43
    • 0035488914 scopus 로고    scopus 로고
    • Fluorescent amplified fragment length polymorphism analysis of Norwegian Bacillus cereus and Bacillus thuringiensis soil isolates
    • Ticknor, L.O., Kolsto, A.B., Hill, K.K., Keim, P., Laker, M.T., Tonks, M., and Jackson, P.J. 2001. Fluorescent amplified fragment length polymorphism analysis of Norwegian Bacillus cereus and Bacillus thuringiensis soil isolates. Appl. Environ. Microbiol. 67: 4863-4873.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4863-4873
    • Ticknor, L.O.1    Kolsto, A.B.2    Hill, K.K.3    Keim, P.4    Laker, M.T.5    Tonks, M.6    Jackson, P.J.7
  • 44
    • 0033510933 scopus 로고    scopus 로고
    • Phylogenetic relationships within and between Epichloe and Neotyphodium endophytes as estimated by AFLP markers and rDNA sequences
    • Tredway, L.P., White, J.F., Gaut, B.S., Reddy, P.V., Richardson, M.D., and Clarke, B.B. 1999. Phylogenetic relationships within and between Epichloe and Neotyphodium endophytes as estimated by AFLP markers and rDNA sequences. Mycol. Res. 103: 1593-1603.
    • (1999) Mycol. Res. , vol.103 , pp. 1593-1603
    • Tredway, L.P.1    White, J.F.2    Gaut, B.S.3    Reddy, P.V.4    Richardson, M.D.5    Clarke, B.B.6
  • 45
    • 0030905664 scopus 로고    scopus 로고
    • Production of cellulase by a wild strain of Chaetomium globosum using delignified oil palm empty-fruit-bunch fibre as substrate
    • Umikalsom, M.S., Ariff, A.B., Shamsuddin, Z.H., Tong, C.C., Hassan, M.A., and Karim, M.I.A. 1997. Production of cellulase by a wild strain of Chaetomium globosum using delignified oil palm empty-fruit-bunch fibre as substrate. Appl. Microbiol. Biotechnol. 47: 590-595.
    • (1997) Appl. Microbiol. Biotechnol. , vol.47 , pp. 590-595
    • Umikalsom, M.S.1    Ariff, A.B.2    Shamsuddin, Z.H.3    Tong, C.C.4    Hassan, M.A.5    Karim, M.I.A.6
  • 48
    • 0036926580 scopus 로고    scopus 로고
    • SCAR markers to detect mycorrhizas of an American Laccaria bicolor strain inoculated in European Douglas-fir plantations
    • Weber, J., Diez, J., Selosse, M.A., Tagu, D., and Le Tacon, F. 2002. SCAR markers to detect mycorrhizas of an American Laccaria bicolor strain inoculated in European Douglas-fir plantations. Mycorrhiza, 12: 19-27.
    • (2002) Mycorrhiza , vol.12 , pp. 19-27
    • Weber, J.1    Diez, J.2    Selosse, M.A.3    Tagu, D.4    Le Tacon, F.5
  • 49
    • 0034881797 scopus 로고    scopus 로고
    • Characterization of AFLP markers in damselflies: Prevalence of codominant markers and implications for population genetic applications
    • Wong, A., Forbes, M.R., and Smith, M.L. 2001. Characterization of AFLP markers in damselflies: prevalence of codominant markers and implications for population genetic applications. Genome, 44: 677-684.
    • (2001) Genome , vol.44 , pp. 677-684
    • Wong, A.1    Forbes, M.R.2    Smith, M.L.3


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