Changes in gene expression in a porcine preadipocyte cell line during differentiation

Animal Genetics

Volumn 43, Issue 5, 2012, Pages 535-544

  Matsumoto, T ^a,b   Nakajima, I ^c   Eguchi Ogawa, T ^b,d   Nagamura, Y ^d   Hamasima, N ^b,d   Uenishi, H ^b,d  

^a Institute of the Society for Techno innovation of Agriculture   (Japan)

^b Animal Genome Research Program   (Japan)

^c NATIONAL INSTITUTE OF LIVESTOCK AND GRASSLAND SCIENCE   (Japan)

^d NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

differentiation; gene expression; microarray; pig; preadipocyte; quantitative trait loci

Indexed keywords

COMPLEMENTARY DNA; TRANSCRIPTOME;

ADIPOCYTE; ADIPOSE TISSUE; ANIMAL; ANIMAL DISEASE; ARTICLE; CELL DIFFERENTIATION; CELL LINE; CYTOLOGY; DNA MICROARRAY; GROWTH, DEVELOPMENT AND AGING; METABOLISM; QUANTITATIVE TRAIT LOCUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SWINE;

ADIPOCYTES; ADIPOSE TISSUE; ANIMALS; CELL DIFFERENTIATION; CELL LINE; DNA, COMPLEMENTARY; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; QUANTITATIVE TRAIT LOCI; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SWINE; TRANSCRIPTOME;

ANIMALIA; SUIDAE; SUS;

EID: 84865864016     PISSN: 02689146     EISSN: 13652052     Source Type: Journal    
DOI: 10.1111/j.1365-2052.2011.02310.x     Document Type: Article

References (52)

1. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., &, Lipman D.J., (1997) gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Research 25, 3389-402. (Pubitemid 27359211)
2. Angers M., Uldry M., Kong D., Gimble J.M., &, Jetten A.M., (2008) Mfsd2a encodes a novel major facilitator superfamily domain-containing protein highly induced in brown adipose tissue during fasting and adaptive thermogenesis. Biochemical Journal 416, 347-55.
3. Archibald A.L., Bolund L., Churcher C., et al,. (2010) Pig genome sequence-analysis and publication strategy. BMC Genomics 11, 438.
4. Ashburner M., Ball C.A., Blake J.A., et al,. (2000) Gene ontology: tool for the unification of biology. The gene ontology consortium. Nature Genetics 25, 25-9. (Pubitemid 30257031)
5. Aso H., Abe H., Nakajima I., Ozutsumi K., Yamaguchi T., Takamori Y., Kodama A., Hoshino F.B., &, Takano S., (1995) A preadipocyte clonal line from bovine intramuscular adipose tissue: nonexpression of GLUT-4 protein during adipocyte differentiation. Biochemical and Biophysical Research Communications 213, 369-75.
6. Benjamini Y., &, Hochberg Y., (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society: Series B 57, 289-300.
7. Boiko A.D., Porteous S., Razorenova O.V., Krivokrysenko V.I., Williams B.R., &, Gudkov A.V., (2006) A systematic search for downstream mediators of tumor suppressor function of p53 reveals a major role of BTG2 in suppression of Ras-induced transformation. Genes & Development 20, 236-52. (Pubitemid 43112941)
8. Boone C., Grégoire F., &, Remacle C., (1999) Regulation of porcine adipogenesis in vitro, as compared with other species. Domestic Animal Endocrinology 17, 257-67. (Pubitemid 29480336)
9. Duez H., Duhem C., Laitinen S., Patole P.S., Abdelkarim M., Bois-Joyeux B., Danan J.L., &, Staels B., (2009) Inhibition of adipocyte differentiation by RORα. FEBS Letters 583, 2031-6.
10. Duthie C., Simm G., Doeschl-Wilson A., Kalm E., Knap P.W., &, Roehe R., (2008) Quantitative trait loci for chemical body composition traits in pigs and their positional associations with body tissues, growth and feed intake. Animal Genetics 39, 130-40. (Pubitemid 351441677)
11. Fasshauer M., Kralisch S., Klier M., Lossner U., Bluher M., Klein J., &, Paschke R., (2004) Insulin resistance-inducing cytokines differentially regulate SOCS mRNA expression via growth factor- and Jak/Stat-signaling pathways in 3T3-L1 adipocytes. Journal of Endocrinology 181, 129-38. (Pubitemid 38584670)
12. Forest C., Doglio A., Ricquier D., &, Ailhaud G., (1987) A preadipocyte clonal line from mouse brown adipose tissue. Short- and long-term responses to insulin and β-adrenergics. Experimental Cell Research 168, 218-32. (Pubitemid 17001711)
13. Gerbens F., de Koning D.J., Harders F.L., Meuwissen T.H., Janss L.L., Groenen M.A., Veerkamp J.H., Van Arendonk J.A., &, te Pas M.F., (2000) The effect of adipocyte and heart fatty acid-binding protein genes on intramuscular fat and backfat content in Meishan crossbred pigs. Journal of Animal Science 78, 552-9.
14. Green H., &, Kehinde O., (1974) Sublines of mouse 3T3 cells that accumulate lipid. Cell 1, 113-6.
15. Han J., Farmer S.R., Kirkland J.L., Corkey B.E., Yoon R., Pirtskhalava T., Ido Y., &, Guo W., (2002) Octanoate attenuates adipogenesis in 3T3-L1 preadipocytes. Journal of Nutrition 132, 904-10. (Pubitemid 34493551)
16. de Hoon M.J., Imoto S., Nolan J., &, Miyano S., (2004) Open source clustering software. Bioinformatics 20, 1453-4. (Pubitemid 38931415)
17. Hu Z.L., Fritz E.R., &, Reecy J.M., (2007) AnimalQTLdb: a livestock QTL database tool set for positional QTL information mining and beyond. Nucleic Acids Research 35, D604-9. (Pubitemid 46056278)
18. Kim J.J., Zhao H., Thomsen H., Rothschild M.F., &, Dekkers J.C., (2005) Combined line-cross and half-sib QTL analysis of crosses between outbred lines. Genetics Research 85, 235-48. (Pubitemid 41264230)
19. Kim H.B., Kumar A., Wang L., Liu G.H., Keller S.R., Lawrence J.C. Jr, Finck B.N., &, Harris T.E., (2010) Lipin 1 represses NFATc4 transcriptional activity in adipocytes to inhibit secretion of inflammatory factors. Molecular and Cellular Biology 30, 3126-39.
20. de Koning D.J., Pong-Wong R., Varona L., Evans G.J., Giuffra E., Sanchez A., Plastow G., Noguera J.L., Andersson L., &, Haley C.S., (2003) Full pedigree quantitative trait locus analysis in commercial pigs using variance components. Journal of Animal Science 81, 2155-63. (Pubitemid 38571677)
21. Lane M.D., Tang Q.Q., &, Jiang M.S., (1999) Role of the CCAAT enhancer binding proteins (C/EBPs) in adipocyte differentiation. Biochemical and Biophysical Research Communications 266, 677-83. (Pubitemid 30042492)
22. Ma X., Zhang H., Yuan L., Jing H., Thacker P., &, Li D., (2011) CREBL2, interacting with CREB, induces adipogenesis in 3T3-L1 adipocytes. Biochemical Journal 439, 27-38.
23. Martinez S.W., &, Zering K., (2004) Pork Quality and the Role of Market Organization. Agricultural Economic Report No. 835, USDA, Washington D.C.
24. Mizoguchi Y., Hirano T., Itoh T., Aso H., Takasuga A., Sugimoto Y., &, Watanabe T., (2010) Differentially expressed genes during bovine intramuscular adipocyte differentiation profiled by serial analysis of gene expression. Animal Genetics 41, 436-41.
25. Nakajima I., Muroya S., &, Chikuni K., (2003) Growth arrest by octanoate is required for porcine preadipocyte differentiation. Biochemical and Biophysical Research Communications 309, 702-8. (Pubitemid 37083309)
26. Newcom D.W., Baas T.J., Schwab C.R., &, Stalder K.J., (2005) Genetic and phenotypic relationships between individual subcutaneous backfat layers and percentage of longissimus intramuscular fat in Duroc swine. Journal of Animal Science 83, 316-23. (Pubitemid 41594999)
27. Ntambi J.M., &, Kim Y.-C., (2000) Adipocyte differentiation and gene expression. Journal of Nutrition 130, 3122S-6S. (Pubitemid 32005353)
28. 2 pig population. Journal of Animal Science 80, 2801-8. (Pubitemid 41132931)
29. Pertea G., Huang X., Liang F., et al,. (2003) tigr gene indices clustering tools (tgicl): a software system for fast clustering of large EST datasets. Bioinformatics 19, 651-2. (Pubitemid 36417060)
30. Quackenbush J., Liang F., Holt I., Pertea G., &, Upton J., (2000) The TIGR gene indices: reconstruction and representation of expressed gene sequences. Nucleic Acids Research 28, 141-5. (Pubitemid 30047738)
31. Quintanilla R., Pena R.N., Gallardo D., Canovas A., Ramirez O., Diaz I., Noguera J.L., &, Amills M., (2011) Porcine intramuscular fat content and composition are regulated by quantitative trait loci with muscle-specific effects. Journal of Animal Science 89, 2963-71.
32. Rohrer G.A., Thallman R.M., Shackelford S., Wheeler T., &, Koohmaraie M., (2006) A genome scan for loci affecting pork quality in a Duroc-Landrace F population. Animal Genetics 37, 17-27. (Pubitemid 43381848)
33. Ron M., &, Weller J.I., (2007) From QTL to QTN identification in livestock-winning by points rather than knock-out: a review. Animal Genetics 38, 429-39. (Pubitemid 47480951)
34. Rothschild M.F., Hu Z.L., &, Jiang Z., (2007) Advances in QTL mapping in pigs. International Journal of Biological Sciences 3, 192-7. (Pubitemid 46280055)
35. Rouault J.P., Falette N., Guéhenneux F., et al,. (1996) Identification of BTG2, an antiproliferative p53-dependent component of the DNA damage cellular response pathway. Nature Genetics 14, 482-6. (Pubitemid 26414597)
36. Sanosaka M., Minashima T., Suzuki K., Watanabe K., Ohwada S., Hagino A., Rose M.T., Yamaguchi T., &, Aso H., (2008) A combination of octanoate and oleate promotes in vitro differentiation of porcine intramuscular adipocytes. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology 149, 285-92. (Pubitemid 350300010)
37. Sasaki Y., Nagai K., Nagata Y., et al,. (2006) Exploration of genes showing intramuscular fat deposition-associated expression changes in musculus longissimus muscle. Animal Genetics 37, 40-6. (Pubitemid 43381851)
38. Sato K., Nakanishi N., &, Mitsumoto M., (1996) Culture conditions supporting adipose conversion of stromal-vascular cells from bovine intramuscular adipose tissues. Journal of Veterinary Medical Science 58, 1073-8. (Pubitemid 126478411)
39. Satoh K., Doi K., Nagata T., et al,. (2007) Gene organization in rice revealed by full-length cDNA mapping and gene expression analysis through microarray. PLoS ONE 2, e1235.
40. Schürmann A., Breiner M., Becker W., Huppertz C., Kainulainen H., Kentrup H., &, Joost H.G., (1994) Cloning of two novel ADP-ribosylation factor-like proteins and characterization of their differential expression in 3T3-L1 cells. The Journal of Biological Chemistry 269, 15683-8. (Pubitemid 24202161)
41. Sellier P., (1998) Genetics of meat and carcass traits. In: Genetics of the Pig (Ed. by, M.F. Rothschild, &, A. Ruvinsky,), pp. 463-510. CAB International, Wallingford.
42. Sellner E.M., Kim J.W., McClure M.C., Taylor K.H., Schnabel R.D., &, Taylor J.F., (2007) Board-invited review: applications of genomic information in livestock. Journal of Animal Science 85, 3148-58. (Pubitemid 350247366)
43. Soma Y., Uemoto Y., Sato S., Shibata T., Kadowaki H., Kobayashi E., &, Suzuki K., (2011) Genome-wide mapping and identification of new quantitative trait loci affecting meat production, meat quality, and carcass traits within a Duroc purebred population. Journal of Animal Science 89, 601-8.
44. Spinola M., Falvella F.S., Colombo F., Sullivan J.P., Shames D.S., Girard L., Spessotto P., Minna J.D., &, Dragani T.A., (2010) MFSD2A is a novel lung tumor suppressor gene modulating cell cycle and matrix attachment. Molecular Cancer 9, 62.
45. Subramanian A., Tamayo P., Mootha V.K., et al,. (2005) Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proceedings of National Academy of Science USA 102, 15545-50. (Pubitemid 41528093)
46. Subramanian A., Kuehn H., Gould J., Tamayo P., &, Mesirov J.P., (2007) gsea-p: a desktop application for gene set enrichment analysis. Bioinformatics 23, 3251-3. (Pubitemid 350187532)
47. Suzuki K., Inomata K., Katoh K., Kadowaki H., &, Shibata T., (2009) Genetic correlations among carcass cross-sectional fat area ratios, production traits, intramuscular fat, and serum leptin concentration in Duroc pigs. Journal of Animal Science 87, 2209-15.
48. Uenishi H., Eguchi-Ogawa T., Shinkai H., Okumura N., Suzuki K., Toki D., Hamasima N., &, Awata T., (2007) PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Nucleic Acids Research 35, D650-3. (Pubitemid 46056285)
49. Wada Y., Akita T., Awata T., et al,. (2000) Quantitative trait loci (QTL) analysis in a Meishan × Göttingen cross population. Animal Genetics 31, 376-84. (Pubitemid 32100253)
50. Wayne M.L., &, McIntyre L.M., (2002) Combining mapping and arraying: an approach to candidate gene identification. Proceedings of National Academy of Science USA 99, 14903-6. (Pubitemid 35334582)
51. Wood J.D., Enser M., Fisher A.V., Nute G.R., Richardson R.I., &, Sheard P.R., (1999) Manipulating meat quality and composition. Proceedings of the Nutrition Society 58, 363-70. (Pubitemid 29398120)
52. Yamasaki T., Inoue-Murayama M., Tahara K., et al,. (2005) Isolation of genes showing increased expression during bovine adipocyte differentiation. Animal Science Journal 76, 479-89. (Pubitemid 41696043)