-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
DOI 10.1093/nar/25.17.3389
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402 (Pubitemid 27359211)
-
(1997)
Nucleic Acids Research
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0344146592
-
Characterization of the pathway-specific positive transcriptional regulator for actinorhodin biosynthesis in Streptomyces coelicolor A3(2) as a DNA-binding protein
-
Arias P, Fernandez-Moreno MA, Malpartida F (1999) Characterization of the pathway-specific positive transcriptional regulator for actinorhodin biosynthesis in Streptomyces coelicolor A3(2) as a DNA-binding protein. J Bacteriol 181:6958-6968 (Pubitemid 29536508)
-
(1999)
Journal of Bacteriology
, vol.181
, Issue.22
, pp. 6958-6968
-
-
Arias, P.1
Fernandez-Moreno, M.A.2
Malpartida, F.3
-
3
-
-
0036166719
-
Differential roles of two sarp-encoding regulatory genes during tylosin biosynthesis
-
DOI 10.1046/j.1365-2958.2002.02756.x
-
Bate N, Stratigopoulos G, Cundliffe E (2002) Differential roles of two SARP-encoding regulatory genes during tylosin biosynthesis. Mol Microbiol 43:449-458 (Pubitemid 34146734)
-
(2002)
Molecular Microbiology
, vol.43
, Issue.2
, pp. 449-458
-
-
Bate, N.1
Stratigopoulos, G.2
Cundliffe, E.3
-
4
-
-
0029945534
-
The regulation of antibiotic production in Streptomyces coelicolor A3(2)
-
Bibb M (1996) 1995 Colworth Prize Lecture. The regulation of antibiotic production in Streptomyces coelicolor A3(2). Microbiology 142(Pt 6):1335-1344 (Pubitemid 26193842)
-
(1996)
Microbiology
, vol.142
, Issue.6
, pp. 1335-1344
-
-
Bibb, M.1
-
5
-
-
15744383448
-
Regulation of secondary metabolism in streptomycetes
-
DOI 10.1016/j.mib.2005.02.016, Cell Regulation
-
Bibb MJ (2005) Regulation of secondary metabolism in streptomycetes. Curr Opin Microbiol 8:208-215 (Pubitemid 40417964)
-
(2005)
Current Opinion in Microbiology
, vol.8
, Issue.2
, pp. 208-215
-
-
Bibb, M.J.1
-
6
-
-
0002435032
-
Regulation and integration of antibiotic production and morphological differentiation in Streptomyces spp
-
Patrick Piggot CM, Youngman P (eds). American Society for Microbiology, Washington, D
-
Champness WC, Chater KF (1994) Regulation and integration of antibiotic production and morphological differentiation in Streptomyces spp. In: Patrick Piggot CM, Youngman P (eds) Regulation of bacterial differentiation. American Society for Microbiology, Washington, D.C., pp 61-93
-
(1994)
Regulation of Bacterial Differentiation
, vol.100
, pp. 61-93
-
-
Champness, W.C.1
Chater, K.F.2
-
7
-
-
77958105027
-
Forty years of monensin for the control of coccidiosis in poultry
-
Chapman HD, Jeffers TK, Williams RB (2010) Forty years of monensin for the control of coccidiosis in poultry. Poult Sci 89:1788-1801
-
(2010)
Poult Sci
, vol.89
, pp. 1788-1801
-
-
Chapman, H.D.1
Jeffers, T.K.2
Williams, R.B.3
-
8
-
-
49449102829
-
Identification and utility of FdmR1 as a Streptomyces antibiotic regulatory protein activator for fredericamycin production in Streptomyces griseus ATCC 49344 and heterologous hosts
-
Chen Y, Wendt-Pienkowski E, Shen B (2008) Identification and utility of FdmR1 as a Streptomyces antibiotic regulatory protein activator for fredericamycin production in Streptomyces griseus ATCC 49344 and heterologous hosts. J Bacteriol 190: 5587-5596
-
(2008)
J Bacteriol
, vol.190
, pp. 5587-5596
-
-
Chen, Y.1
Wendt-Pienkowski, E.2
Shen, B.3
-
9
-
-
0024097996
-
"Strong incompatibility" between derivatives of the Streptomyces multi-copy plasmid pIJ101
-
Deng ZX, Kieser T, Hopwood DA (1988) "Strong incompatibility" between derivatives of the Streptomyces multi-copy plasmid pIJ101. Mol Gen Genet 214:286-294
-
(1988)
Mol Gen Genet
, vol.214
, pp. 286-294
-
-
Deng, Z.X.1
Kieser, T.2
Hopwood, D.A.3
-
10
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A (2009) The Pfam protein families database. Nucleic Acids Res 38:D211-D222
-
(2009)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
Pollington, J.E.6
Gavin, O.L.7
Gunasekaran, P.8
Ceric, G.9
Forslund, K.10
Holm, L.11
Sonnhammer, E.L.12
Eddy, S.R.13
Bateman, A.14
-
11
-
-
0031572413
-
High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes
-
DOI 10.1016/S0378-1097(97)00392-3, PII S0378109797003923
-
Flett F, Mersinias V, Smith CP (1997) High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes. FEMS Microbiol Lett 155:223-229 (Pubitemid 28248232)
-
(1997)
FEMS Microbiology Letters
, vol.155
, Issue.2
, pp. 223-229
-
-
Flett, F.1
Mersinias, V.2
Smith, C.P.3
-
12
-
-
0027483415
-
Stationary-phase production of the antibiotic actinorhodin in Streptomyces coelicolor A3(2) is transcriptionally regulated
-
Gramajo HC, Takano E, Bibb MJ (1993) Stationary-phase production of the antibiotic actinorhodin in Streptomyces coelicolor A3(2) is transcriptionally regulated. Mol Microbiol 7:837-845 (Pubitemid 23101396)
-
(1993)
Molecular Microbiology
, vol.7
, Issue.6
, pp. 837-845
-
-
Gramajo, H.C.1
Takano, E.2
Bibb, M.J.3
-
13
-
-
0037452723
-
PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin
-
DOI 10.1073/pnas.0337542100
-
Gust B, Challis GL, Fowler K, Kieser T, Chater KF (2003) PCRtargeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin. Proc Natl Acad Sci USA 100:1541-1546 (Pubitemid 36254483)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.4
, pp. 1541-1546
-
-
Gust, B.1
Challis, G.L.2
Fowler, K.3
Kieser, T.4
Chater, K.F.5
-
14
-
-
77955009848
-
Two pHZ1358-derivative vectors for efficient gene knockout in streptomyces
-
He Y, Wang Z, Bai L, Liang J, Zhou X, Deng Z (2010) Two pHZ1358-derivative vectors for efficient gene knockout in streptomyces. J Microbiol Biotechnol 20:678-682
-
(2010)
J Microbiol Biotechnol
, vol.20
, pp. 678-682
-
-
He, Y.1
Wang, Z.2
Bai, L.3
Liang, J.4
Zhou, X.5
Deng, Z.6
-
16
-
-
0003869903
-
-
John Innes Foundation, Norwich
-
Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA (2000) Practical streptomyces genetics. A laboratory manual. John Innes Foundation, Norwich
-
(2000)
Practical Streptomyces Genetics. A Laboratory Manual
-
-
Kieser, T.1
Bibb, M.J.2
Buttner, M.J.3
Chater, K.F.4
Hopwood, D.A.5
-
17
-
-
0035675996
-
Engineering of complex polyketide biosynthesis - Insights from sequencing of the monensin biosynthetic gene cluster
-
DOI 10.1038/sj.jim.7000204
-
Leadlay PF, Staunton J, Oliynyk M, Bisang C, Cortes J, Frost E, Hughes-Thomas ZA, Jones MA, Kendrew SG, Lester JB, \Long PF, McArthur HA, McCormick EL, Oliynyk Z, Stark CB, Wilkinson CJ (2001) Engineering of complex polyketide biosynthesis - insights from sequencing of the monensin biosynthetic gene cluster. J Ind Microbiol Biotechnol 27: 360-367 (Pubitemid 34043004)
-
(2001)
Journal of Industrial Microbiology and Biotechnology
, vol.27
, Issue.6
, pp. 360-367
-
-
Leadlay, P.F.1
Staunton, J.2
Oliynyk, M.3
Bisang, C.4
Cortes, J.5
Frost, E.6
Hughes-Thomas, Z.A.7
Jones, M.A.8
Kendrew, S.G.9
Lester, J.B.10
Long, P.F.11
McArthur, H.A.12
McCormick, E.L.13
Oliynyk, Z.14
Stark, C.B.15
Wilkinson, C.J.16
-
18
-
-
33748528639
-
Identification of NanE as the Thioesterase for Polyether Chain Release in Nanchangmycin Biosynthesis
-
DOI 10.1016/j.chembiol.2006.07.006, PII S1074552106002638
-
Liu T, You D, Valenzano C, Sun Y, Li J, Yu Q, Zhou X, Cane DE, Deng Z (2006) Identification of NanE as the thioesterase for polyether chain release in nanchangmycin biosynthesis. Chem Biol 13:945-955 (Pubitemid 44375170)
-
(2006)
Chemistry and Biology
, vol.13
, Issue.9
, pp. 945-955
-
-
Liu, T.1
You, D.2
Valenzano, C.3
Sun, Y.4
Li, J.5
Yu, Q.6
Zhou, X.7
Cane, D.E.8
Deng, Z.9
-
19
-
-
0028915915
-
Functional characterization and transcriptional analysis of the dnrR1 locus, which controls daunorubicin biosynthesis in Streptomyces peucetius
-
Madduri K, Hutchinson CR (1995) Functional characterization and transcriptional analysis of the dnrR1 locus, which controls daunorubicin biosynthesis in Streptomyces peucetius. J Bacteriol 177:1208-1215
-
(1995)
J Bacteriol
, vol.177
, pp. 1208-1215
-
-
Madduri, K.1
Hutchinson, C.R.2
-
20
-
-
0026816531
-
Clusters of genes for the biosynthesis of antibiotics: Regulatory genes and overproduction of pharmaceuticals
-
Martin JF (1992) Clusters of genes for the biosynthesis of antibiotics: regulatory genes and overproduction of pharmaceuticals. J Ind Microbiol 9:73-90
-
(1992)
J Ind Microbiol
, vol.9
, pp. 73-90
-
-
Martin, J.F.1
-
21
-
-
79951818857
-
Cross-talk of global nutritional regulators in the control of primary and secondary metabolism in Streptomyces
-
Martin JF, Sola-Landa A, Santos-Beneit F, Fernandez-Martinez LT, Prieto C, Rodriguez-Garcia A (2011) Cross-talk of global nutritional regulators in the control of primary and secondary metabolism in Streptomyces. Microb Biotechnol 4:165-174
-
(2011)
Microb Biotechnol
, vol.4
, pp. 165-174
-
-
Martin, J.F.1
Sola-Landa, A.2
Santos-Beneit, F.3
Fernandez-Martinez, L.T.4
Prieto, C.5
Rodriguez-Garcia, A.6
-
22
-
-
0031566431
-
Structural relationships in the OmpR family of winged-helix transcription factors
-
DOI 10.1006/jmbi.1997.1065
-
Martinez-Hackert E, Stock AM (1997) Structural relationships in the OmpR family of winged-helix transcription factors. J Mol Biol 269:301-312 (Pubitemid 27267754)
-
(1997)
Journal of Molecular Biology
, vol.269
, Issue.3
, pp. 301-312
-
-
Martinez-Hackert, E.1
Stock, A.M.2
-
23
-
-
79958171833
-
The role of two SARP-family transcriptional regulators in regulation of the auricin gene cluster in Streptomyces aureofaciens CCM 3239
-
Novakova R, Rehakova A, Kutas P, Feckova L, Kormanec J (2011) The role of two SARP-family transcriptional regulators in regulation of the auricin gene cluster in Streptomyces aureofaciens CCM 3239. Microbiology 157:1629-1639
-
(2011)
Microbiology
, vol.157
, pp. 1629-1639
-
-
Novakova, R.1
Rehakova, A.2
Kutas, P.3
Feckova, L.4
Kormanec, J.5
-
24
-
-
17844392892
-
AdpA, a central transcriptional regulator in the A-factor regulatory cascade that leads to morphological development and secondary metabolism in Streptomyces griseus
-
DOI 10.1271/bbb.69.431
-
Ohnishi Y, Yamazaki H, Kato JY, Tomono A, Horinouchi S (2005) AdpA, a central transcriptional regulator in the A-factor regulatory cascade that leads to morphological development and secondary metabolism in Streptomyces griseus. Biosci Biotechnol Biochem 69:431-439 (Pubitemid 40589099)
-
(2005)
Bioscience, Biotechnology and Biochemistry
, vol.69
, Issue.3
, pp. 431-439
-
-
Ohnishi, Y.1
Yamazaki, H.2
Kato, J.-Y.3
Tomono, A.4
Horinouchi, S.5
-
25
-
-
0141789847
-
Analysis of the biosynthetic gene cluster for the polyether antibiotic monensin in Streptomyces cinnamonensis and evidence for the role of monB and monC genes in oxidative cyclization
-
DOI 10.1046/j.1365-2958.2003.03571.x
-
Oliynyk M, Stark CB, Bhatt A, Jones MA, Hughes-Thomas ZA, Wilkinson C, Oliynyk Z, Demydchuk Y, Staunton J, Leadlay PF (2003) Analysis of the biosynthetic gene cluster for the polyether antibiotic monensin in Streptomyces cinnamonensis and evidence for the role of monB and monC genes in oxidative cyclization. Mol Microbiol 49:1179-1190 (Pubitemid 37153489)
-
(2003)
Molecular Microbiology
, vol.49
, Issue.5
, pp. 1179-1190
-
-
Oliynyk, M.1
Stark, C.B.W.2
Bhatt, A.3
Jones, M.A.4
Hughes-Thomas, Z.A.5
Wilkinson, C.6
Oliynyk, Z.7
Demydchuk, Y.8
Staunton, J.9
Leadlay, P.F.10
-
26
-
-
0008414583
-
A new species of Streptomyces producing insecticidal antibiotics
-
Ouyang L, Wan S, Tu G, Chen X, Zhen Y, Gao Y, Xie X (1984) A new species of Streptomyces producing insecticidal antibiotics. Chin J Microbiol 24:195-199
-
(1984)
Chin J Microbiol
, vol.24
, pp. 195-199
-
-
Ouyang, L.1
Wan, S.2
Tu, G.3
Chen, X.4
Zhen, Y.5
Gao, Y.6
Xie, X.7
-
27
-
-
0036581160
-
Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
-
Pfaffl MW, Horgan GW, Dempfle L (2002) Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res 30:e36
-
(2002)
Nucleic Acids Res
, vol.30
-
-
Pfaffl, M.W.1
Horgan, G.W.2
Dempfle, L.3
-
28
-
-
43749083945
-
Amino acids important for DNA recognition by the response regulator OmpR
-
Rhee JE, Sheng W, Morgan LK, Nolet R, Liao X, Kenney LJ (2008) Amino acids important for DNA recognition by the response regulator OmpR. J Biol Chem 283:8664-8677
-
(2008)
J Biol Chem
, vol.283
, pp. 8664-8677
-
-
Rhee, J.E.1
Sheng, W.2
Morgan, L.K.3
Nolet, R.4
Liao, X.5
Kenney, L.J.6
-
29
-
-
0036152265
-
Structure, conformation, and mechanism in the membrane transport of alkali metal ions by ionophoric antibiotics
-
DOI 10.1002/chir.10052
-
Riddell FG (2002) Structure, conformation, and mechanism in the membrane transport of alkali metal ions by ionophoric antibiotics. Chirality 14:121-125 (Pubitemid 34113142)
-
(2002)
Chirality
, vol.14
, Issue.2-3
, pp. 121-125
-
-
Riddell, F.G.1
-
31
-
-
0036229192
-
Mapping the DNA-binding domain and target sequences of the Streptomyces peucetius daunorubicin biosynthesis regulatory protein, DnrI
-
DOI 10.1046/j.1365-2958.2002.02886.x
-
Sheldon PJ, Busarow SB, Hutchinson CR (2002) Mapping the DNAbinding domain and target sequences of the Streptomyces peucetius daunorubicin biosynthesis regulatory protein, DnrI. Mol Microbiol 44:449-460 (Pubitemid 34429747)
-
(2002)
Molecular Microbiology
, vol.44
, Issue.2
, pp. 449-460
-
-
Sheldon, P.J.1
Busarow, S.B.2
Hutchinson, C.R.3
-
32
-
-
0036175076
-
'Streptomyces nanchangensis', a producer of the insecticidal polyether antibiotic nanchangmycin and the antiparasitic macrolide meilingmycin, contains multiple polyketide gene clusters
-
Sun Y, Zhou X, Liu J, Bao K, Zhang G, Tu G, Kieser T, Deng Z (2002) 'Streptomyces nanchangensis', a producer of the insecticidal polyether antibiotic nanchangmycin and the antiparasitic macrolide meilingmycin, contains multiple polyketide gene clusters. Microbiology 148:361-371 (Pubitemid 34162779)
-
(2002)
Microbiology
, vol.148
, Issue.2
, pp. 361-371
-
-
Sun, Y.1
Zhou, X.2
Liu, J.3
Bao, K.4
Zhang, G.5
Tu, G.6
Kieser, T.7
Deng, Z.8
-
33
-
-
0037846116
-
A complete gene cluster from Streptomyces nanchangensis NS3226 encoding biosynthesis of the polyether ionophore nanchangmycin
-
DOI 10.1016/S1074-5521(03)00092-9
-
Sun Y, Zhou X, Dong H, Tu G, Wang M, Wang B, Deng Z (2003) A complete gene cluster from Streptomyces nanchangensis NS3226 encoding biosynthesis of the polyether ionophore nanchangmycin. Chem Biol 10:431-441 (Pubitemid 36599251)
-
(2003)
Chemistry and Biology
, vol.10
, Issue.5
, pp. 431-441
-
-
Sun, Y.1
Zhou, X.2
Dong, H.3
Tu, G.4
Wang, M.5
Wang, B.6
Deng, Z.7
-
34
-
-
59449108190
-
Analysis of functions in plasmid pHZ1358 influencing its genetic and structural stability in Streptomyces lividans 1326
-
Sun Y, He X, Liang J, Zhou X, Deng Z (2009) Analysis of functions in plasmid pHZ1358 influencing its genetic and structural stability in Streptomyces lividans 1326. Appl Microbiol Biotechnol 82:303-310
-
(2009)
Appl Microbiol Biotechnol
, vol.82
, pp. 303-310
-
-
Sun, Y.1
He, X.2
Liang, J.3
Zhou, X.4
Deng, Z.5
-
35
-
-
77951610231
-
Regulation of lankamycin biosynthesis in Streptomyces rochei by two SARP genes, srrY and srrZ
-
Suzuki T, Mochizuki S, Yamamoto S, Arakawa K, Kinashi H (2010) Regulation of lankamycin biosynthesis in Streptomyces rochei by two SARP genes, srrY and srrZ. Biosci Biotechnol Biochem 74:819-827
-
(2010)
Biosci Biotechnol Biochem
, vol.74
, pp. 819-827
-
-
Suzuki, T.1
Mochizuki, S.2
Yamamoto, S.3
Arakawa, K.4
Kinashi, H.5
-
36
-
-
0026784840
-
Transcriptional regulation of the redD transcriptional activator gene accounts for growth-phase-dependent production of the antibiotic undecylprodigiosin in Streptomyces coelicolor A3(2)
-
Takano E, Gramajo HC, Strauch E, Andres N, White J, Bibb MJ (1992) Transcriptional regulation of the redD transcriptional activator gene accounts for growth-phase-dependent production of the antibiotic undecylprodigiosin in Streptomyces coelicolor A3(2). Mol Microbiol 6:2797-2804
-
(1992)
Mol Microbiol
, vol.6
, pp. 2797-2804
-
-
Takano, E.1
Gramajo, H.C.2
Strauch, E.3
Andres, N.4
White, J.5
Bibb, M.J.6
-
37
-
-
34247604950
-
AfsR Recruits RNA Polymerase to the afsS Promoter: A Model for Transcriptional Activation by SARPs
-
DOI 10.1016/j.jmb.2007.02.096, PII S0022283607003452
-
Tanaka A, Takano Y, Ohnishi Y, Horinouchi S (2007) AfsR recruits RNA polymerase to the afsS promoter: a model for transcriptional activation by SARPs. J Mol Biol 369:322-333 (Pubitemid 46678042)
-
(2007)
Journal of Molecular Biology
, vol.369
, Issue.2
, pp. 322-333
-
-
Tanaka, A.1
Takano, Y.2
Ohnishi, Y.3
Horinouchi, S.4
-
38
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific ga penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
39
-
-
0030929313
-
A novel family of proteins that regulates antibiotic production in streptomycetes appears to contain an OmpR-like DNA-binding fold [3]
-
Wietzorrek A, Bibb M (1997) A novel family of proteins that regulates antibiotic production in streptomycetes appears to contain an OmpR-like DNA-binding fold. Mol Microbiol 25:1181-1184 (Pubitemid 27410198)
-
(1997)
Molecular Microbiology
, vol.25
, Issue.6
, pp. 1181-1184
-
-
Wietzorrek, A.1
Bibb, M.2
-
40
-
-
0035988290
-
Increasing the efficiency of heterologous promoters in actinomycetes
-
Wilkinson CJ, Hughes-Thomas ZA, Martin CJ, Bohm I, Mironenko T, Deacon M, Wheatcroft M, Wirtz G, Staunton J, Leadlay PF (2002) Increasing the efficiency of heterologous promoters in actinomycetes. J Mol Microbiol Biotechnol 4:417-426 (Pubitemid 34784704)
-
(2002)
Journal of Molecular Microbiology and Biotechnology
, vol.4
, Issue.4
, pp. 417-426
-
-
Wilkinson, C.J.1
Hughes-Thomas, Z.A.2
Martin, C.J.3
Bohm, I.4
Mironenko, T.5
Deacon, M.6
Wheatcroft, M.7
Wirtz, G.8
Staunton, J.9
Leadlay, P.F.10
|