Winogradskyella multivorans sp. nov., a polysaccharidedegrading bacterium isolated from seawater of an oyster farm

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 102, Issue 2, 2012, Pages 231-238

  Yoon, Jung Hoon ^a   Lee, Soo Young ^b  

^a Sungkyunkwan University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

Oyster farm; Polyphasic taxonomy; Polysaccharides; Winogradskyella multivorans sp. nov.

Indexed keywords

BACTERIAL POLYSACCHARIDE; RNA 16S;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; DNA CONTENT; FLAVOBACTERIACEAE; GENE EXPRESSION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; NEIGHBOR JOINING METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PRIORITY JOURNAL; SPECIES DIFFERENTIATION; WINOGRADSKYELLA MULTIVORANS;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BIODEGRADATION, ENVIRONMENTAL; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAVOBACTERIACEAE; MOLECULAR SEQUENCE DATA; OSTREIDAE; PHYLOGENY; POLYSACCHARIDES; REPUBLIC OF KOREA; RNA, RIBOSOMAL, 16S; SEAWATER;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; OSTREIDAE; WINOGRADSKYELLA;

EID: 84865790411     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9729-8     Document Type: Article

References (35)

1. Bernardet JF (2011) Family Flavobacteriaceae Reichenbach, 1992. In: Krieg NR, Ludwig W, Whitman WB, Hedlund BP, Paster BJ, Staley JT, Ward N, Brown D, Parte A (eds) Bergey's manual of systematic bacteriology, vol 4. Springer, New York, pp 106-111
2. Bernardet JF, Nakagawa Y, Holmes B (2002) Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52:1049-1070 (Pubitemid 34591240)
3. Bowman JP (2000) Description of Cellulophaga algicola sp. nov., isolated from the surfaces of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50:1861-1868
4. Bruns A, Rohde M, Berthe-Corti L (2001) Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51:1997-2006 (Pubitemid 33107420)
5. Cottrell MT, Kirchman DL (2000) Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization. Appl Environ Microbiol 66:5116-5122 (Pubitemid 32217106)
6. Cowan ST, Steel KJ (1965) Manual for the identification of medical bacteria. Cambridge University Press, London Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
7. Felsenstein J (1993) PHYLIP: Phylogenetic Inference Package, version 3.5. University of Washington, Seattle
8. Ivanova EP, Christen R, Gorshkova NM, Zhukova NV, Kurilenko VV, Crawford RJ, Mikhailov VV (2010) Winogradskyella exilis sp. nov., isolated from the starfish Stellaster equestris, and emended description of the genus Winogradskyella. Int J Syst Evol Microbiol 60:1577-1580
9. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism, vol 3. Academic Press, New York, pp 21-132
10. Kim SB, Nedashkovskaya OI (2010) Winogradskyella pacifica sp. nov., a marine bacterium of the family Flavobacteriaceae. Int J Syst Evol Microbiol 60:1948-1951
11. Kirchman DL (2002) The ecology of Cytophaga-Flavobacteria in aquatic environments. FEMS Microbiol Ecol 39:91-100 (Pubitemid 34251208)
12. Kluge AG, Farris FS (1969) Quantitative phyletics and the evolution of anurans. Syst Zool 18:1-32
13. Komagata K, Suzuki KI (1987) Lipid and cell wall analysis in bacterial systematics. Methods Microbiol 19:161-207
14. La'nyí B (1987) Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19:1-67
15. Lau SCK, Tsoi MMY, Li X, Plakhotnikova I, Dobretsov S, Lau KWK, Wu M, Wong PK, Pawlik JR, Qian PY (2005) Winogradskyella poriferorum sp. nov., a novel member of the family Flavobacteriaceae isolated from a sponge in the Bahamas. Int J Syst Evol Microbiol 55:1589-1592 (Pubitemid 41015608)
16. Lee SY, Park S, Oh TK, Yoon JH (2011) Winogradskyella aquimaris sp. nov., isolated fromseawater of theSouth Sea in Korea. Int J Syst Evol Microbiol. doi:10.1099/ijs.0.034090-0
17. Leifson E (1963) Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85:1183-1184
18. Minnikin DE, Patel PV, Alshamaony L, Goodfellow M (1977) Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27:104-117 (Pubitemid 8112397)
19. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241 (Pubitemid 14058168)
20. Nedashkovskaya OI, Kim SB, Han SK, Snauwaert C, Vancanneyt M, Swings J, Kim KO, Lysenko AM, Rohde M, Frolova GM, Mikhailov VV, Bae KS (2005) Winogradskyella thalassocola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov., marine bacteria of the family Flavobacteriaceae. Int J Syst Evol Microbiol 55:49-55 (Pubitemid 40185473)
21. Nedashkovskaya OI, Vancanneyt M, Kim SB, Zhukova NV (2009) Winogradskyella echinorum sp. nov., a marine bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius. Int J Syst Evol Microbiol 59:1465-1468
22. Nedashkovskaya OI, Kukhlevskiy AD, Zhukova NV (2011) Winogradskyella ulvae sp. nov., a novel epiphyte of a Pacific seaweed and emended descriptions of the genus Winogradskyella and Winogradskyella thalassocola, Winogradskyella echinorum, Winogradskyella exilis and Winogradskyella eximia. Int J Syst Evol Microbiol. doi: 10.1099/ijs.0.032219-0
23. Pinhassi J, Nedashkovskaya OI, Hagström A°, Vancanneyt M (2009) Winogradskyella rapida sp. nov., isolated from protein-enriched seawater. Int J Syst Evol Microbiol 59:2180-2184
24. Reichenbach H (1992) The order Cytophagales. In: Balows A, Trüper HG, Dworkin M, Harder W, Schleifer KH (eds) The prokaryotes. Springer, New York, pp 3631-3675
25. Romanenko LA, Tanaka N, Frolova GM, Mikhailov VV (2009) Winogradskyella arenosi sp. nov., a member of the family Flavobacteriaceae isolated from marine sediments from the Sea of Japan. Int J Syst Evol Microbiol 59:1443-1446
26. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
27. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI technical note 101. Microbial ID, Inc., Newark
28. Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849 (Pubitemid 24315169)
29. Tamaoka J, Komagata K (1984) Determination of DNA base composition by reverse-phase high-performance liquid chromatography. FEMS Microbiol Lett 25:125-128 (Pubitemid 15217312)
30. Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (Pubitemid 24354800)
31. Yoon JH, Kim H, Kim SB, Kim HJ, Kim WY, Lee ST, Goodfellow M, Park YH (1996) Identification of Saccharomonospora strains by the use of genomic DNA fragments and rRNA gene probes. Int J Syst Bacteriol 46:502-505 (Pubitemid 26113877)
32. Yoon JH, Lee ST, Park YH (1998) Inter-And intraspecific phylogenetic analysis of the genus Nocardioides and related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48:187-194 (Pubitemid 28144651)
33. Yoon JH, Kang KH, Park YH (2003) Psychrobacter jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 53:449-454 (Pubitemid 36416752)
34. Yoon BJ, Byun HD, Kim JY, Lee DH, Kahng HY, Oh DC (2011) Winogradskyella lutea sp. nov., isolated from seawater, and emended description of the genus Winogradskyella. Int J Syst Evol Microbiol 61:1539-1543
35. Yoon JH, Kang SJ, Lee SY (2012) Salinimonas lutimais sp. nov., a polysaccharide-degrading bacterium isolated from a tidal flat. Antonie van Leeuwenhoek. doi:10.1007/s10482-011-9695-6