Winogradskyella arenosi sp. nov., a member of the family Flavobacteriaceae isolated from marine sediments from the Sea of Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 6, 2009, Pages 1443-1446

  Romanenko, Lyudmila A ^a   Tanaka, Naoto ^b   Frolova, Galina M ^a   Mikhailov, Valery V ^a  

^a PACIFIC INSTITUTE OF BIOORGANIC CHEMISTRY   (Russian Federation)

^b TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

FATTY ACID; RNA 16S; BACTERIAL DNA; RIBOSOME DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CONTROLLED STUDY; FLAVOBACTERIACEAE; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; JAPAN; LIPID COMPOSITION; MARINE BACTERIUM; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SEDIMENT; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; WINOGRADSKYELLA ARENOSI; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SEA;

BACTERIA (MICROORGANISMS); FLAVOBACTERIACEAE; NEGIBACTERIA; WINOGRADSKYELLA;

BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAVOBACTERIACEAE; GEOLOGIC SEDIMENTS; JAPAN; MOLECULAR SEQUENCE DATA; OCEANS AND SEAS; PHENOTYPE; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 67651109009     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.006809-0     Document Type: Article

References (15)

1. Bligh, E. G. & Dyer, W. J. (1959). A rapid method of total lipid extraction and purification. Can J Biochem Physiol 37, 911-917.
2. Bowman, J. P. (2000). Description of Cellulophaga algicola sp. nov., isolated from the surface of Antarctic algae, and reclassification of Cytophaga uliginosa (ZoBell and Upham 1944) Reichenbach 1989 as Cellulophaga uliginosa comb. nov. Int J Syst Evol Microbiol 50, 1861-1868.
3. Fautz, E. & Reichenbach, H. (1980). A simple test for flexirubin-type pigments. FEMS Microbiol Lett 8, 87-91.
4. Lau, S. C. K., Tsoi, M. M. Y., Li, X., Plakhotnikova, I., Dobretsov, S., Lau, K. W. K., Wu, M., Wong, P.-K., Pawlik, J. R. & Qian, P.-Y. (2005). Winogradskyella poriferorum sp. nov., a novel member of the family Flavobacteriaceae isolated from a sponge in the Bahamas. Int J Syst Evol Microbiol 55, 1589-1592.
5. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
6. Nedashkovskaya, O. I., Kim, S. B., Han, S. K., Snauwaert, C., Vancanneyt, M., Swings, J., Kim, K. O., Lysenko, A. M., Rohde, M. & other authors (2005). Winogradskyella thalassocola gen. nov., sp. nov., Winogradskyella epiphytica sp. nov. and Winogradskyella eximia sp. nov., marine bacteria of the family Flavobacteriaceae. Int J Syst Evol Microbiol 55, 49-55.
7. Pearson, W. R. & Lipman, D. J. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
8. Romanenko, L. A., Schumann, P., Rohde, M., Mikhailov, V. V. & Stackebrandt, E. (2004). Reinekea marinisedimentorum gen. nov., sp. nov., a novel gammaproteobacterium from marine coastal sediments. Int J Syst Evol Microbiol 54, 669-673.
9. Romanenko, L. A., Uchino, M., Frolova, G. M. & Mikhailov, V. V. (2007). Marixanthomonas ophiurae gen. nov., sp. nov., a novel marine bacterium of the family Flavobacteriaceae isolated from a deep-sea brittle star. Int J Syst Evol Microbiol 57, 457-462.
10. Rowe, N. J., Tunstall, J., Galbraith, L. & Wilkinson, S. G. (2000). Lipid composition of [Pseudomonas] echinoides: transfer to the genus Sphingomonas. Microbiology 146, 3007-3012.
11. Shida, O., Takagi, H., Kadowaki, K., Nakamura, L. K. & Komagata, K. (1997). Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47, 289-298.
12. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
13. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
14. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
15. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.