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Volumn 27, Issue 9, 2012, Pages 3395-3398

Has the proteome of formalin-fixed wax-embedded tissue been unlocked?

Author keywords

biomarker; formalin fixed; glomerulus; kidney; mass spectrometry

Indexed keywords

BINDING PROTEIN; BIOLOGICAL MARKER; FORMALDEHYDE; NEPHRONECTIN; PROTEOME; UNCLASSIFIED DRUG;

EID: 84865783651     PISSN: 09310509     EISSN: 14602385     Source Type: Journal    
DOI: 10.1093/ndt/gfs342     Document Type: Note
Times cited : (2)

References (37)
  • 1
    • 0033646177 scopus 로고    scopus 로고
    • Proteomics: A new approach to the study of disease
    • Chambers G, Lawrie L, Cash P et al. Proteomics: a new approach to the study of disease. J Pathol 2000; 192: 280-288.
    • (2000) J Pathol , vol.192 , pp. 280-288
    • Chambers, G.1    Lawrie, L.2    Cash, P.3
  • 2
    • 0035352362 scopus 로고    scopus 로고
    • Spot the differences: Proteomics in cancer research
    • Lawrie LC, Fothergill JE, Murray GI. Spot the differences: proteomics in cancer research. Lancet Oncol 2001; 2: 270-277.
    • (2001) Lancet Oncol , vol.2 , pp. 270-277
    • Lawrie, L.C.1    Fothergill, J.E.2    Murray, G.I.3
  • 3
    • 77958462510 scopus 로고    scopus 로고
    • Biomarkers for colorectal cancer: Identification through proteomics
    • Ralton LD, Murray GI. Biomarkers for colorectal cancer: identification through proteomics. Curr Proteomics 2010; 7: 212-221.
    • (2010) Curr Proteomics , vol.7 , pp. 212-221
    • Ralton, L.D.1    Murray, G.I.2
  • 4
    • 38549174826 scopus 로고    scopus 로고
    • Characterisation and protein expression profiling of annexins in colorectal cancer
    • Duncan R, Carpenter B, Main LC et al. Characterisation and protein expression profiling of annexins in colorectal cancer. Br J Cancer 2008; 98: 426-433.
    • (2008) Br J Cancer , vol.98 , pp. 426-433
    • Duncan, R.1    Carpenter, B.2    Main, L.C.3
  • 5
    • 79960048284 scopus 로고    scopus 로고
    • Stage-related alterations in renal cell carcinoma-comprehensive quantitative analysis by 2D-DIGE and protein network analysis
    • Junker H, Venz S, Zimmermann U et al. Stage-related alterations in renal cell carcinoma-comprehensive quantitative analysis by 2D-DIGE and protein network analysis. PLoS One 2011; 6: e21867.
    • (2011) PLoS One , vol.6
    • Junker, H.1    Venz, S.2    Zimmermann, U.3
  • 6
    • 79958078403 scopus 로고    scopus 로고
    • Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy
    • Moon PG, Lee JE, You S et al. Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy. Proteomics 2011; 11: 2459-2475.
    • (2011) Proteomics , vol.11 , pp. 2459-2475
    • Moon, P.G.1    Lee, J.E.2    You, S.3
  • 7
    • 77949902393 scopus 로고    scopus 로고
    • Autoimmunity in membranous nephropathy targets aldose reductase and SOD2
    • Prunotto M, Carnevali ML, Candiano G et al. Autoimmunity in membranous nephropathy targets aldose reductase and SOD2. J Am Soc Nephrol 2010; 21: 507-519.
    • (2010) J Am Soc Nephrol , vol.21 , pp. 507-519
    • Prunotto, M.1    Carnevali, M.L.2    Candiano, G.3
  • 8
    • 78049441143 scopus 로고    scopus 로고
    • Urine proteome analysis may allow noninvasive differential diagnosis of diabetic nephropathy
    • Papale M, Di Paolo S, Magistroni R et al. Urine proteome analysis may allow noninvasive differential diagnosis of diabetic nephropathy. Diabetes Care 2010; 33: 2409-2415.
    • (2010) Diabetes Care , vol.33 , pp. 2409-2415
    • Papale, M.1    Di Paolo, S.2    Magistroni, R.3
  • 9
    • 79957614666 scopus 로고    scopus 로고
    • Mapping of molecular pathways, biomarkers and drug targets for diabetic nephropathy
    • Fechete R, Heinzel A, Perco P et al. Mapping of molecular pathways, biomarkers and drug targets for diabetic nephropathy. Proteomics Clin Appl 2011; 5: 354-366.
    • (2011) Proteomics Clin Appl , vol.5 , pp. 354-366
    • Fechete, R.1    Heinzel, A.2    Perco, P.3
  • 10
    • 64749097274 scopus 로고    scopus 로고
    • Proteomics on fixed tissue specimens-a review
    • Reimel BA, Pan S, May DH et al. Proteomics on fixed tissue specimens-a review. Curr Proteomics 2009; 6: 63-69.
    • (2009) Curr Proteomics , vol.6 , pp. 63-69
    • Reimel, B.A.1    Pan, S.2    May, D.H.3
  • 11
    • 79953072078 scopus 로고    scopus 로고
    • The use of formalin fixed wax embedded tissue for proteomic analysis
    • Ralton LD, Murray GI. The use of formalin fixed wax embedded tissue for proteomic analysis. J Clin Pathol 2011; 64: 297-302.
    • (2011) J Clin Pathol , vol.64 , pp. 297-302
    • Ralton, L.D.1    Murray, G.I.2
  • 12
    • 77950817999 scopus 로고    scopus 로고
    • Histo-proteomic profiling of formalin-fixed, paraffin-embedded tissue
    • Matsuda KM, Chung JY, Hewitt SM. Histo-proteomic profiling of formalin-fixed, paraffin-embedded tissue. Expert Rev Proteomics 2010; 7: 227-337.
    • (2010) Expert Rev Proteomics , vol.7 , pp. 227-337
    • Matsuda, K.M.1    Chung, J.Y.2    Hewitt, S.M.3
  • 13
    • 84865790403 scopus 로고    scopus 로고
    • Proteome analysis of laser microdissected glomeruli from formalin-fixed paraffin-embedded kidneys of autopsies of diabetic patients: Nephronectin is associated with the development of diabetic glomerulosclerosis
    • Nakatani S, Wei M, Ishimura E et al. Proteome analysis of laser microdissected glomeruli from formalin-fixed paraffin-embedded kidneys of autopsies of diabetic patients: nephronectin is associated with the development of diabetic glomerulosclerosis. Nephrol Dial Transplant 2012; 27: 1889-1897.
    • (2012) Nephrol Dial Transplant , vol.27 , pp. 1889-1897
    • Nakatani, S.1    Wei, M.2    Ishimura, E.3
  • 14
    • 84865764650 scopus 로고    scopus 로고
    • Opening a treasure chest: Glomerular proteome analyses of formalin-fixed paraffin-embedded kidney tissue in the investigation of diabetic nephropathy
    • Blutke A. Opening a treasure chest: glomerular proteome analyses of formalin-fixed paraffin-embedded kidney tissue in the investigation of diabetic nephropathy. Nephrol Dial Transplant 2012; 27: 1695-1698.
    • (2012) Nephrol Dial Transplant , vol.27 , pp. 1695-1698
    • Blutke, A.1
  • 15
    • 34249062964 scopus 로고    scopus 로고
    • The minimum information about a proteomics experiment (MIAPE)
    • Taylor CF, Paton NW, Lilley KS et al. The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol 2007; 25: 887-893.
    • (2007) Nat Biotechnol , vol.25 , pp. 887-893
    • Taylor, C.F.1    Paton, N.W.2    Lilley, K.S.3
  • 16
    • 77649244055 scopus 로고    scopus 로고
    • Proteomics out of the archive: Two-dimensional electrophoresis and mass spectrometry using HOPE-fixed, paraffin embedded tissues
    • Kahler D, Alexander C, Schultz H et al. Proteomics out of the archive: two-dimensional electrophoresis and mass spectrometry using HOPE-fixed, paraffin embedded tissues. J Histochem Cytochem 2010; 58: 221-228.
    • (2010) J Histochem Cytochem , vol.58 , pp. 221-228
    • Kahler, D.1    Alexander, C.2    Schultz, H.3
  • 17
    • 77956327955 scopus 로고    scopus 로고
    • Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gelbased proteomics
    • Azimzadeh O, Barjaktarovic Z, Aubele M et al. Formalin-fixed paraffin-embedded (FFPE) proteome analysis using gel-free and gelbased proteomics. J Proteome Res 2010; 9: 4710-4720.
    • (2010) J Proteome Res , vol.9 , pp. 4710-4720
    • Azimzadeh, O.1    Barjaktarovic, Z.2    Aubele, M.3
  • 18
    • 62849124399 scopus 로고    scopus 로고
    • Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting
    • Nirmalan NJ, Harnden P, Selby PJ et al. Development and validation of a novel protein extraction methodology for quantitation of protein expression in formalin-fixed paraffin-embedded tissues using western blotting. J Pathol 2009; 217: 497-506.
    • (2009) J Pathol , vol.217 , pp. 497-506
    • Nirmalan, N.J.1    Harnden, P.2    Selby, P.J.3
  • 19
    • 79951731085 scopus 로고    scopus 로고
    • Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues
    • Tanca A, Pagnozzi D, Falchi G et al. Application of 2-D DIGE to formalin-fixed, paraffin-embedded tissues. Proteomics 2011; 11: 1005-1011.
    • (2011) Proteomics , vol.11 , pp. 1005-1011
    • Tanca, A.1    Pagnozzi, D.2    Falchi, G.3
  • 20
    • 70249095601 scopus 로고    scopus 로고
    • Protein extraction of formalin-fixed, paraffin-embedded tissue enables robust proteomic profiles by mass spectrometry
    • Scicchitano MS, Dalmas DA, Boyce RWet al. Protein extraction of formalin-fixed, paraffin-embedded tissue enables robust proteomic profiles by mass spectrometry. J Histochem Cytochem 2009; 57: 849-860.
    • (2009) J Histochem Cytochem , vol.57 , pp. 849-860
    • Scicchitano, M.S.1    Dalmas, D.A.2    Boyce, R.W.3
  • 21
    • 53549111100 scopus 로고    scopus 로고
    • High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry
    • Groseclose MR, Massion PP, Chaurand P et al. High-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue microarrays using MALDI imaging mass spectrometry. Proteomics 2008; 8: 3715-3724.
    • (2008) Proteomics , vol.8 , pp. 3715-3724
    • Groseclose, M.R.1    Massion, P.P.2    Chaurand, P.3
  • 22
    • 53549127586 scopus 로고    scopus 로고
    • Protein unlocking procedures of formalin-fixed paraffin-embedded tissues: Application to MALDI-TOF imaging MS investigations
    • Ronci M, Bonanno E, Colantoni A et al. Protein unlocking procedures of formalin-fixed paraffin-embedded tissues: Application to MALDI-TOF imaging MS investigations. Proteomics 2008; 8: 3702-3714.
    • (2008) Proteomics , vol.8 , pp. 3702-3714
    • Ronci, M.1    Bonanno, E.2    Colantoni, A.3
  • 23
    • 77952764025 scopus 로고    scopus 로고
    • Quantitative proteomic analysis of formalin fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labelling, two dimensional liquid chromatography, and tandem mass spectrometry
    • Xiao Z, Li G, Chen Y et al. Quantitative proteomic analysis of formalin fixed and paraffin-embedded nasopharyngeal carcinoma using iTRAQ labelling, two dimensional liquid chromatography, and tandem mass spectrometry. J Histochem Cytochem 2010; 58: 517-527.
    • (2010) J Histochem Cytochem , vol.58 , pp. 517-527
    • Xiao, Z.1    Li, G.2    Chen, Y.3
  • 24
    • 68549098247 scopus 로고    scopus 로고
    • Generation of high-quality protein extracts from formalin-fixed paraffin-embedded tissues
    • Addis MF, Tanca A, Pagnozzi D et al. Generation of high-quality protein extracts from formalin-fixed paraffin-embedded tissues. Proteomics 2009; 9: 3815-3823.
    • (2009) Proteomics , vol.9 , pp. 3815-3823
    • Addis, M.F.1    Tanca, A.2    Pagnozzi, D.3
  • 25
    • 71049141298 scopus 로고    scopus 로고
    • Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis
    • Sprung RW, Jr, Brock JW, Tanksley JP et al. Equivalence of protein inventories obtained from formalin-fixed paraffin-embedded and frozen tissue in multidimensional liquid chromatography-tandem mass spectrometry shotgun proteomic analysis. Mol Cell Proteomics 2009; 8: 1988-1998.
    • (2009) Mol Cell Proteomics , vol.8 , pp. 1988-1998
    • Sprung Jr., R.W.1    Brock, J.W.2    Tanksley, J.P.3
  • 26
    • 44449101783 scopus 로고    scopus 로고
    • Antigen retrieval for proteomic characterization of formalin-fixed and paraffin-embedded tissues
    • Xu H, Yang L, Wang W et al. Antigen retrieval for proteomic characterization of formalin-fixed and paraffin-embedded tissues. J Proteome Res 2008; 7: 1098-1108.
    • (2008) J Proteome Res , vol.7 , pp. 1098-1108
    • Xu, H.1    Yang, L.2    Wang, W.3
  • 27
    • 34248573442 scopus 로고    scopus 로고
    • An overview of laser microdissection technologies
    • Murray GI. An overview of laser microdissection technologies. Acta Histochem 2007; 109: 171-176.
    • (2007) Acta Histochem , vol.109 , pp. 171-176
    • Murray, G.I.1
  • 28
    • 32944454622 scopus 로고    scopus 로고
    • Proteome analysis of early post-mortem changes in two bovine muscle types: M. longissimus dorsi and M. semitendinosis
    • Jia X, Hollung K, Therkildsen M et al. Proteome analysis of early post-mortem changes in two bovine muscle types: M. longissimus dorsi and M. semitendinosis. Proteomics 2006; 6: 936-944.
    • (2006) Proteomics , vol.6 , pp. 936-944
    • Jia, X.1    Hollung, K.2    Therkildsen, M.3
  • 29
    • 33745854852 scopus 로고    scopus 로고
    • Changes in enzymes associated with energy metabolism during the early post mortem period in longissimus thoracis bovine muscle analyzed by proteomics
    • Jia X, Hildrum KI, Westad F et al. Changes in enzymes associated with energy metabolism during the early post mortem period in longissimus thoracis bovine muscle analyzed by proteomics. J Proteome Res 2006; 5: 1763-1769.
    • (2006) J Proteome Res , vol.5 , pp. 1763-1769
    • Jia, X.1    Hildrum, K.I.2    Westad, F.3
  • 30
    • 80054825298 scopus 로고    scopus 로고
    • Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry
    • Casadonte R, Caprioli RM. Proteomic analysis of formalin-fixed paraffin-embedded tissue by MALDI imaging mass spectrometry. Nat Protoc 2011; 6: 1695-1709.
    • (2011) Nat Protoc , vol.6 , pp. 1695-1709
    • Casadonte, R.1    Caprioli, R.M.2
  • 31
    • 79960431406 scopus 로고    scopus 로고
    • Imaging of intact tissue sections: Moving beyond the microscope
    • Seeley EH, Schwamborn K, Caprioli RM. Imaging of intact tissue sections: moving beyond the microscope. J Biol Chem 2011; 286: 25459-25466.
    • (2011) J Biol Chem , vol.286 , pp. 25459-25466
    • Seeley, E.H.1    Schwamborn, K.2    Caprioli, R.M.3
  • 32
    • 77954378942 scopus 로고    scopus 로고
    • Proteome phosphoproteome N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry
    • Ostasiewicz P, Zielinska DF, Mann M et al. Proteome, phosphoproteome, N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry. J Proteome Res 2010; 9: 3688-3700.
    • (2010) J Proteome Res , vol.9 , pp. 3688-3700
    • Ostasiewicz, P.1    Zielinska, D.F.2    Mann, M.3
  • 33
    • 79551641520 scopus 로고    scopus 로고
    • Successful protein extraction from over-fixed and long-term stored formalin fixed tissues
    • Wolff C, Schott C, Porschewski P et al. Successful protein extraction from over-fixed and long-term stored formalin fixed tissues. PLoS One 2011; 6: e16353.
    • (2011) PLoS One , vol.6
    • Wolff, C.1    Schott, C.2    Porschewski, P.3
  • 34
    • 84859965675 scopus 로고    scopus 로고
    • Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues
    • Magdeldin S, Yamamoto T. Toward deciphering proteomes of formalin-fixed paraffin-embedded (FFPE) tissues. Proteomics 2012; 12: 1045-1058.
    • (2012) Proteomics , vol.12 , pp. 1045-1058
    • Magdeldin, S.1    Yamamoto, T.2
  • 35
    • 84863323376 scopus 로고    scopus 로고
    • Laser microdissection and mass spectrometry-based proteomics aids the diagnosis and typing of renal amyloidosis
    • Apr 11 doi:10.1038/ki.2012.108
    • Sethi S, Vrana JA, Theis JD et al. Laser microdissection and mass spectrometry-based proteomics aids the diagnosis and typing of renal amyloidosis. Kidney Int 2012 Apr 11. doi:10.1038/ki.2012.108.
    • (2012) Kidney Int
    • Sethi, S.1    Vrana, J.A.2    Theis, J.D.3
  • 36
    • 84856400021 scopus 로고    scopus 로고
    • Searching for new biomarkers of renal diseases through proteomics
    • Konvalinka A, Scholey JW, Diamandis EP. Searching for new biomarkers of renal diseases through proteomics. Clin Chem 2012; 58: 353-365.
    • (2012) Clin Chem , vol.58 , pp. 353-365
    • Konvalinka, A.1    Scholey, J.W.2    Diamandis, E.P.3
  • 37
    • 33644755627 scopus 로고    scopus 로고
    • Profiling markers of prognosis in colorectal cancer
    • Lyall MS, Dundas SR, Curran S et al. Profiling markers of prognosis in colorectal cancer. Clin Cancer Res 2006; 12: 1184-1191.
    • (2006) Clin Cancer Res , vol.12 , pp. 1184-1191
    • Lyall, M.S.1    Dundas, S.R.2    Curran, S.3


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