-
2
-
-
14844328879
-
Smartcell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: Analysis of simple networks
-
M. Ander, P. Beltrao, B. D. Ventura, J. Ferkinghoff-Borg, M. Foglierini, A. Kaplan, C. Lemerle, I. Tom'as-Oliveira, and L. Serrano, SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: Analysis of simple networks, Syst. Biol., 1 (2004), pp. 129-138.
-
(2004)
Syst. Biol.
, vol.1
, pp. 129-138
-
-
Ander, M.1
Beltrao, P.2
Ventura, B.D.3
Ferkinghoff-Borg, J.4
Foglierini, M.5
Kaplan, A.6
Lemerle, C.7
Tom'as-Oliveira, I.8
Serrano, L.9
-
3
-
-
70450285537
-
Accurate particle-based simulation of adsorption, desorption and partial transmission
-
S. S. Andrews, Accurate particle-based simulation of adsorption, desorption and partial transmission, Phys. Biol., 6 (2009), 046015.
-
(2009)
Phys. Biol.
, vol.6
, pp. 046015
-
-
Andrews, S.S.1
-
4
-
-
77950833499
-
Detailed simulations of cell biology with smoldyn 2.1
-
S. S. Andrews, N. J. Addy, R. Brent, and A. P. Arkin, Detailed simulations of cell biology with Smoldyn 2.1, PLoS Comput. Biol., 6 (2010), e1000705.
-
(2010)
PLoS Comput. Biol.
, vol.6
-
-
Andrews, S.S.1
Addy, N.J.2
Brent, R.3
Arkin, A.P.4
-
5
-
-
33748520215
-
Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
-
DOI 10.1088/1478-3967/1/3/001, PII S1478396704832492, 001
-
S. S. Andrews and D. Bray, Stochastic simulation of chemical reactions with spatial resolution and single molecule detail, Phys. Biol., 1 (2004), pp. 137-151. (Pubitemid 44362291)
-
(2004)
Physical Biology
, vol.1
, Issue.3
, pp. 137-151
-
-
Andrews, S.S.1
Bray, D.2
-
6
-
-
76149129015
-
A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of e. Coli mine to e-ring formation
-
S. N. V. Arjunan and M. Tomita, A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E. coli MinE to E-ring formation, Syst. Synth. Biol., 4 (2010), pp. 35-53.
-
(2010)
Syst. Synth. Biol.
, vol.4
, pp. 35-53
-
-
Arjunan, S.N.V.1
Tomita, M.2
-
7
-
-
0344551102
-
Stochastic model of autocrine and paracrine signals in cell culture assays
-
L. Batsilas, A. M. Berezhkovskii, and S. Y. Shvartsman, Stochastic model of autocrine and paracrine signals in cell culture assays, Biophys. J., 85 (2003), pp. 3659-3665. (Pubitemid 37490279)
-
(2003)
Biophysical Journal
, vol.85
, Issue.6
, pp. 3659-3665
-
-
Batsilas, L.1
Berezhkovskii, A.M.2
Shvartsman, S.Y.3
-
8
-
-
77958493404
-
Adaptive mesh refinement for stochastic reaction-diffusion processes
-
B. Bayati, P. Chatelin, and P. Koumoutsakos, Adaptive mesh refinement for stochastic reaction-diffusion processes, J. Comput. Phys., 230 (2011), pp. 13-26.
-
(2011)
J. Comput. Phys.
, vol.230
, pp. 13-26
-
-
Bayati, B.1
Chatelin, P.2
Koumoutsakos, P.3
-
9
-
-
0018676324
-
Diffusion-controlled reactions on spherical surfaces
-
V. A. Bloomfield and S. Prager, Diffusion-controlled reactions on spherical surfaces, Biophys. J., 27 (1979), pp. 447-453.
-
(1979)
Biophys. J.
, vol.27
, pp. 447-453
-
-
Bloomfield, V.A.1
Prager, S.2
-
10
-
-
34548333580
-
Modelling and simulation techniques for membrane biology
-
DOI 10.1093/bib/bbm033, Integrative Biology
-
K. Burrage, J. Hancock, A. Leier, and D. V. Nicolau, Jr., Modelling and simulation techniques for membrane biology, Brief. Bioinf., 8 (2007), pp. 234-244. (Pubitemid 47335454)
-
(2007)
Briefings in Bioinformatics
, vol.8
, Issue.4
, pp. 234-244
-
-
Burrage, K.1
Hancock, J.2
Leier, A.3
Nicolau, D.V.4
-
12
-
-
8744294882
-
How to simulate anisotropic diffusion processes on curved surfaces
-
DOI 10.1016/j.jcp.2004.06.005, PII S0021999104002360
-
M. Christensen, How to simulate anisotropic diffusion processes on curved surfaces, J. Comput. Phys., 201 (2004), pp. 421-438. (Pubitemid 39518792)
-
(2004)
Journal of Computational Physics
, vol.201
, Issue.2
, pp. 421-438
-
-
Christensen, M.1
-
13
-
-
73649118168
-
Coupling atomistic and continuum hydrodynamics through a mesoscopic model: Application to liquid water
-
R. Delgado-Buscalioni, K. Kremer, and M. Praprotnik, Coupling atomistic and continuum hydrodynamics through a mesoscopic model: Application to liquid water, J. Chem. Phys., 131 (2009), 244107.
-
(2009)
J. Chem. Phys.
, vol.131
, pp. 244107
-
-
Delgado-Buscalioni, R.1
Kremer, K.2
Praprotnik, M.3
-
14
-
-
34548141875
-
Computational methods for diffusion-influenced biochemical reactions
-
M. Dobrzy'nski, J. V. Rodr'iguez, J. A. Kaandorp, and J. G. Blom, Computational methods for diffusion-influenced biochemical reactions, Bioinformatics, 23 (2007), pp. 134-155.
-
(2007)
Bioinformatics
, vol.23
, pp. 134-155
-
-
Dobrzy'nski, M.1
Rodr'iguez, J.V.2
Kaandorp, J.A.3
Blom, J.G.4
-
15
-
-
77951914064
-
A hybrid particle continuum method for hydrodynamics of complex fluids
-
A. Donev, J. B. Bell, A. L. Garcia, and B. J. Alder, A hybrid particle-continuum method for hydrodynamics of complex fluids, Multiscale Model. Simul., 8 (2010), pp. 871-911.
-
(2010)
Multiscale Model. Simul.
, vol.8
, pp. 871-911
-
-
Donev, A.1
Bell, J.B.2
Garcia, A.L.3
Alder, B.J.4
-
16
-
-
84865699542
-
-
Department of Information Technology, Uppsala University, Uppsala, Sweden
-
B. Drawert, S. Engblom, and A. Hellander, URDME 1.1: User's Manual, Technical report 2011-003, Department of Information Technology, Uppsala University, Uppsala, Sweden, 2011.
-
(2011)
URDME 1.1: User's Manual, Technical Report 2011-2013
-
-
Drawert, B.1
Engblom, S.2
Hellander, A.3
-
17
-
-
77149180781
-
The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation
-
B. Drawert, M. J. Lawson, L. Petzold, and M. Khammash, The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation, J. Chem. Phys., 132 (2010), 074101.
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 074101
-
-
Drawert, B.1
Lawson, M.J.2
Petzold, L.3
Khammash, M.4
-
18
-
-
34548474934
-
Heterogeneous multiscale methods: A review
-
W. E, B. Engquist, X. Li, W. Ren, and E. Vanden-Eijnden, Heterogeneous multiscale methods: A review, Commun. Comput. Phys., 2 (2007), pp. 367-450.
-
(2007)
Commun. Comput. Phys.
, vol.2
, pp. 367-450
-
-
Engquist, W.E.B.1
Li, X.2
Ren, W.3
Vanden-Eijnden, E.4
-
19
-
-
0000326144
-
Brownian dynamics simulations of reversible reactions in one dimension
-
A. Edelstein and N. Agmon, Brownian dynamics simulations of reversible reactions in one dimension, J. Chem. Phys., 99 (1993), pp. 5396-5404.
-
(1993)
J. Chem. Phys.
, vol.99
, pp. 5396-5404
-
-
Edelstein, A.1
Agmon, N.2
-
20
-
-
20844455677
-
Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases
-
J. Elf and M. Ehrenberg, Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases, Syst. Biol., 1 (2004), pp. 230-236.
-
(2004)
Syst. Biol.
, vol.1
, pp. 230-236
-
-
Elf, J.1
Ehrenberg, M.2
-
21
-
-
34249932435
-
Probing transcription factor dynamics at the single-molecule level in a living cell
-
DOI 10.1126/science.1141967
-
J. Elf, G.-W. Li, and X. S. Xie, Probing transcription factor dynamics at the single-molecule level in a living cell, Science, 316 (2007), pp. 1191-1194. (Pubitemid 46877481)
-
(2007)
Science
, vol.316
, Issue.5828
, pp. 1191-1194
-
-
Elf, J.1
Li, G.-W.2
Xie, X.S.3
-
22
-
-
0037119587
-
Stochastic gene expression in a single cell
-
DOI 10.1126/science.1070919
-
M. B. Elowitz, A. J. Levine, E. D. Siggia, and P. S. Swain, Stochastic gene expression in a single cell, Science, 297 (2002), pp. 1183-1186. (Pubitemid 36193353)
-
(2002)
Science
, vol.297
, Issue.5584
, pp. 1183-1186
-
-
Elowitz, M.B.1
Levine, A.J.2
Siggia, E.D.3
Swain, P.S.4
-
23
-
-
61849164660
-
Simulation of stochastic reactiondiffusion processes on unstructured meshes
-
S. Engblom, L. Ferm, A. Hellander, and P. Lötstedt, Simulation of stochastic reactiondiffusion processes on unstructured meshes, SIAM J. Sci. Comput., 31 (2009), pp. 1774-1797.
-
(2009)
SIAM J. Sci. Comput.
, vol.31
, pp. 1774-1797
-
-
Engblom, S.1
Ferm, L.2
Hellander, A.3
Lötstedt, P.4
-
24
-
-
70350729439
-
Stochastic modelling of reaction-diffusion processes: Algorithms for bimolecular reactions
-
R. Erban and J. Chapman, Stochastic modelling of reaction-diffusion processes: Algorithms for bimolecular reactions, Phys. Biol., 6 (2009), 046001.
-
(2009)
Phys. Biol.
, vol.6
, pp. 046001
-
-
Erban, R.1
Chapman, J.2
-
25
-
-
78650556702
-
Stochastic reaction-diffusion kinetics in the microscopic limit
-
D. Fange, O. G. Berg, P. Sjöberg, and J. Elf, Stochastic reaction-diffusion kinetics in the microscopic limit, Proc. Natl. Acad. Sci. USA, 107 (2010), pp. 19820-19825.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 19820-19825
-
-
Fange, D.1
Berg, O.G.2
Sjöberg, P.3
Elf, J.4
-
26
-
-
33745591124
-
Noise induced min phenotypes in E. Coli
-
D. Fange and J. Elf, Noise induced Min phenotypes in E. coli, PLoS Comput. Biol., 2 (2006), e80.
-
(2006)
PLoS Comput. Biol.
, vol.2
-
-
Fange, D.1
Elf, J.2
-
27
-
-
84860779000
-
The two-regime method for optimizing stochastic reaction-diffusion simulations
-
M. B. Flegg, S. J. Chapman, and R. Erban, The two-regime method for optimizing stochastic reaction-diffusion simulations, J. R. Soc. Interface, 9 (2012), pp. 859-868.
-
J. R. Soc. Interface
, vol.9
, Issue.2012
, pp. 859-868
-
-
Flegg, M.B.1
Chapman, S.J.2
Erban, R.3
-
28
-
-
0000383154
-
Adaptive mesh and algorithm refinement using direct simulation monte carlo
-
A. L. Garcia, J. B. Bell, W. Y. Crutchfield, and B. J. Alder, Adaptive mesh and algorithm refinement using direct simulation Monte Carlo, J. Comput. Phys., 154 (1999), pp. 134-155.
-
(1999)
J. Comput. Phys.
, vol.154
, pp. 134-155
-
-
Garcia, A.L.1
Bell, J.B.2
Crutchfield, W.Y.3
Alder, B.J.4
-
29
-
-
0017030517
-
A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
-
D. T. Gillespie, A general method for numerically simulating the stochastic time evolution of coupled chemical reactions, J. Comput. Phys., 22 (1976), pp. 403-434.
-
(1976)
J. Comput. Phys.
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
30
-
-
20844432892
-
Stochastic reaction-diffusion simulation with MesoRD
-
DOI 10.1093/bioinformatics/bti431
-
J. Hattne, D. Fange, and J. Elf, Stochastic reaction-diffusion simulation with MesoRD, Bioinformatics, 21 (2005), pp. 2923-2924. (Pubitemid 40862297)
-
(2005)
Bioinformatics
, vol.21
, Issue.12
, pp. 2923-2924
-
-
Hattne, J.1
Fange, D.2
Elf, J.3
-
31
-
-
79952900494
-
Flexible single molecule simulation of reaction-diffusion processes
-
S. Hellander and P. Lötstedt, Flexible single molecule simulation of reaction-diffusion processes, J. Comput. Phys., 230 (2011), pp. 3948-3965.
-
(2011)
J. Comput. Phys.
, vol.230
, pp. 3948-3965
-
-
Hellander, S.1
Lotstedt, P.2
-
32
-
-
67649365828
-
The reaction-diffusion master equation as an asymptotic approximation of diffusion to a small target
-
S. A. Isaacson, The reaction-diffusion master equation as an asymptotic approximation of diffusion to a small target, SIAM J. Appl. Math., 70 (2009), pp. 77-111.
-
(2009)
SIAM J. Appl. Math.
, vol.70
, pp. 77-111
-
-
Isaacson, S.A.1
-
34
-
-
55149086309
-
Fast monte carlo simulation methods for biological reaction-diffusion systems in solution and on surfaces
-
R. A. Kerr, T. M. Bartol, B. Kaminsky, M. Dittrich, J.-C. J. Chang, S. B. Baden, T. J. Sejnowski, and J. R. Stiles, Fast Monte Carlo simulation methods for biological reaction-diffusion systems in solution and on surfaces, SIAM J. Sci. Comput., 30 (2008), pp. 3126-3149.
-
(2008)
SIAM J. Sci. Comput.
, vol.30
, pp. 3126-3149
-
-
Kerr, R.A.1
Bartol, T.M.2
Kaminsky, B.3
Dittrich, M.4
J. Chang, J.-C.5
Baden, S.B.6
Sejnowski, T.J.7
Stiles, J.R.8
-
35
-
-
85128858890
-
Equation-free, coarse-grained multiscale computation: Enabling microscopic simulators to perform system-level analysis
-
I. G. Kevrekidis, C. W. Gear, J. M. Hyman, P. G. Kevrekidis, O. Runborg, and C. Theodoropoulos, Equation-free, coarse-grained multiscale computation: Enabling microscopic simulators to perform system-level analysis, Commun. Math. Sci., 1 (2003), pp. 715-762.
-
(2003)
Commun. Math. Sci.
, vol.1
, pp. 715-762
-
-
Kevrekidis, I.G.1
Gear, C.W.2
Hyman, J.M.3
Kevrekidis, P.G.4
Runborg, O.5
Theodoropoulos, C.6
-
36
-
-
0000435781
-
Exact solution of the reversible diffusion-influenced reaction for an isolated pair in three dimensions
-
H. Kim and K. J. Shin, Exact solution of the reversible diffusion-influenced reaction for an isolated pair in three dimensions, Phys. Rev. Lett., 82 (1999), pp. 1578-1581. (Pubitemid 129646678)
-
(1999)
Physical Review Letters
, vol.82
, Issue.7
, pp. 1578-1581
-
-
Kim, H.1
Shin, K.J.2
-
37
-
-
0032607918
-
Dynamic correlation effect in reversible diffusion-influenced reactions: Brownian dynamics simulation in three dimensions
-
H. Kim, M. Yang, and K. J. Shin, Dynamic correlation effect in reversible diffusion-influenced reactions: Brownian dynamics simulation in three dimensions, J. Chem. Phys., 111 (1999), pp. 1068-1075. (Pubitemid 129308212)
-
(1999)
Journal of Chemical Physics
, vol.111
, Issue.3
, pp. 1068-1075
-
-
Kim, H.1
Yang, M.2
Shin, K.J.3
-
38
-
-
14544289547
-
Multiscale flow simulations using particles
-
DOI 10.1146/annurev.fluid.37.061903.175753
-
P. Koumoutsakos, Multiscale flow simulations using particles, Annu. Rev. Fluid Mech., 37 (2005), pp. 457-487. (Pubitemid 40301264)
-
(2005)
Annual Review of Fluid Mechanics
, vol.37
, pp. 457-487
-
-
Koumoutsakos, P.1
-
39
-
-
0022759528
-
Analysis of intracellular receptor/ligand sorting: Calculation of mean surface and bulk diffusion times within a sphere
-
J. Lindermann and D. Lauffenburger, Analysis of intracellular receptor/ligand sorting: Calculation of mean surface and bulk diffusion times within a sphere, Biophys. J., 50 (1986), pp. 295-305.
-
(1986)
Biophys. J.
, vol.50
, pp. 295-305
-
-
Lindermann, J.1
Lauffenburger, D.2
-
40
-
-
34547554487
-
Reactions on cell membranes: Comparison of continuum theory and brownian dynamics simulations
-
M. I. Monine and J. M. Haugh, Reactions on cell membranes: Comparison of continuum theory and Brownian dynamics simulations, J. Chem. Phys., 123 (2005), 074908.
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 074908
-
-
Monine, M.I.1
Haugh, J.M.2
-
41
-
-
34548697081
-
Diffusion on a curved surface coupled to diffusion in the volume: Application to cell biology
-
I. L. Novak, F. Gao, Y.-S. Choi, D. Resasco, J. C. Schaff, and B. M. Slepchenko, Diffusion on a curved surface coupled to diffusion in the volume: Application to cell biology, J. Comput. Phys., 226 (2007), pp. 1271-1290.
-
(2007)
J. Comput. Phys.
, vol.226
, pp. 1271-1290
-
-
Novak, I.L.1
Gao, F.2
Choi, Y.-S.3
Resasco, D.4
Schaff, J.C.5
Slepchenko, B.M.6
-
42
-
-
72449169547
-
First-passage kinetic Monte Carlo method
-
T. Oppelstrup, V. V. Bulatov, A. Donev, M. H. Kalos, G. H. Gilmer, and B. Sadigh, First-passage kinetic Monte Carlo method, Phys. Rev. E, 80 (2009), 066701.
-
(2009)
Phys. Rev. E
, Issue.80
, pp. 066701
-
-
Oppelstrup, T.1
Bulatov, V.V.2
Donev, A.3
Kalos, M.H.4
Gilmer, G.H.5
Sadigh, B.6
-
43
-
-
53349161901
-
Imaging individual mrna molecules using multiple singly labeled probes
-
A. Raj, P. van den Bogaard, S. A. Rifkin, and A. van Oudenaarden, Imaging individual mRNA molecules using multiple singly labeled probes, Nat. Meth., 5 (2008), pp. 877-879.
-
(2008)
Nat. Meth.
, vol.5
, pp. 877-879
-
-
Raj, A.1
Van Den Bogaard, P.2
Rifkin, S.A.3
Van Oudenaarden, A.4
-
44
-
-
33751377585
-
Cell++-simulating biochemical pathways
-
C. Sanford, M. L. K. Yip, C. White, and J. Parkinson, Cell++-simulating biochemical pathways, Bioinformatics, 22 (2006), pp. 2918-2925.
-
(2006)
Bioinformatics
, vol.22
, pp. 2918-2925
-
-
Sanford, C.1
Yip, M.L.K.2
White, C.3
Parkinson, J.4
-
45
-
-
33646179555
-
Simulations of (an)isotropic diffusion on curved biological surfaces
-
I. F. Sbalzarini, A. Hayer, A. Helenius, and P. Koumoutsakos, Simulations of (an)isotropic diffusion on curved biological surfaces, Biophys. J., 90 (2006), pp. 878-885.
-
(2006)
Biophys. J.
, vol.90
, pp. 878-885
-
-
Sbalzarini, I.F.1
Hayer, A.2
Helenius, A.3
Koumoutsakos, P.4
-
46
-
-
23844541692
-
Numerical computation of diffusion on a surface
-
DOI 10.1073/pnas.0504953102
-
P. Schwarz, D. Adalsteinsson, P. Colella, A. P. Arkin, and M. Onsum, Numerical computation of diffusion on a surface, Proc. Natl. Acad. Sci. USA, 102 (2005), pp. 11151-11156. (Pubitemid 41153790)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.32
, pp. 11151-11156
-
-
Schwartz, P.1
Adalsteinsson, D.2
Colella, P.3
Arkin, A.P.4
Onsum, M.5
-
47
-
-
0000267310
-
Versuch einer mathematischen Theorie der Koagulationskinetik kolloider Lösungen
-
M. von Smoluchowski, Versuch einer mathematischen Theorie der Koagulationskinetik kolloider Lösungen, Z. Phys. Chemie, 92 (1917), pp. 129-168.
-
(1917)
Z. Phys. Chemie
, vol.92
, pp. 129-168
-
-
Von Smoluchowski, M.1
-
48
-
-
8544264562
-
Efficient attenuation of stochasticity in gene expression through post-transcriptional control
-
DOI 10.1016/j.jmb.2004.09.073, PII S0022283604012306
-
P. S. Swain, Efficient attenuation of stochasticity in gene expression through posttranscriptional control, J. Mol. Biol., 344 (2004), pp. 965-976. (Pubitemid 39491243)
-
(2004)
Journal of Molecular Biology
, vol.344
, Issue.4
, pp. 965-976
-
-
Swain, P.S.1
-
49
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
P. S. Swain, M. B. Elowitz, and E. D. Siggia, Intrinsic and extrinsic contributions to stochasticity in gene expression, Proc. Natl. Acad. Sci. USA, 99 (2002), pp. 12795-12800.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
50
-
-
77249093066
-
Spatio-Temporal correlations can drastically change the response of a mapk pathway
-
K. Takahashi, S. Tanase-Nicola, and P. R. ten Wolde, Spatio-Temporal correlations can drastically change the response of a MAPK pathway, Proc. Natl. Acad. Sci. USA, 107 (2010), pp. 2473-2478.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 2473-2478
-
-
Takahashi, K.1
Tanase-Nicola, S.2
Ten Wolde, P.R.3
-
51
-
-
38349102161
-
The particle-in-cell method
-
D. Tskhakaya, K. Matyash, R. Schneider, and F. Taccaogna, The particle-in-cell method, Contrib. Plasma Phys., 47 (2007), pp. 563-594.
-
(2007)
Contrib. Plasma Phys.
, vol.47
, pp. 563-594
-
-
Tskhakaya, D.1
Matyash, K.2
Schneider, R.3
Taccaogna, F.4
-
52
-
-
77950545445
-
Steps: Modeling and simulating complex reaction-diffusion systems with python
-
S. Wils and E. D. Schutter, STEPS: Modeling and simulating complex reaction-diffusion systems with Python, Front. Neuroinf., 3 (2009), 15.
-
(2009)
Front. Neuroinf.
, vol.3
, pp. 15
-
-
Wils, S.1
Schutter, E.D.2
-
53
-
-
33845442827
-
Diffusion of transcription factors can drastically enhance the noise in gene expression
-
DOI 10.1529/biophysj.106.086157
-
J. S. van Zon, M. J. Morelli, S. Tanase-Nicola, and P. R. ten Wolde, Diffusion of transcription factors can drastically enhance the noise in gene expression, Biophys. J., 91 (2006), pp. 4350-4367. (Pubitemid 44904223)
-
(2006)
Biophysical Journal
, vol.91
, Issue.12
, pp. 4350-4367
-
-
Van Zon, J.S.1
Morelli, M.J.2
Tanase-Nicola, S.3
Ten Wolde, P.R.4
-
54
-
-
29244454300
-
Green's-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space
-
J. S. van Zon and P. R. ten Wolde, Green's-function reaction dynamics: A particle-based approach for simulating biochemical networks in time and space, J. Chem. Phys., 123 (2005), 234910.
-
(2005)
J. Chem. Phys.
, vol.123
, pp. 234910
-
-
Van Zon, J.S.1
Ten Wolde, P.R.2
-
55
-
-
18244404300
-
Simulating biochemical networks at the particle level and in time and space: Green's-function reaction dynamics
-
J. S. van Zon and P. R. ten Wolde, Simulating biochemical networks at the particle level and in time and space: Green's-function reaction dynamics, Phys. Rev. Lett., 94 (2005), 128103.
-
(2005)
Phys. Rev. Lett.
, vol.94
, pp. 128103
-
-
Van Zon, J.S.1
Ten Wolde, P.R.2
|