-
1
-
-
22244467106
-
Serial rebinding of ligands to clustered receptors as exemplified by bacterial chemotaxis
-
Andrews S S 2005 Serial rebinding of ligands to clustered receptors as exemplified by bacterial chemotaxis Phys. Biol. 2 111-22
-
(2005)
Phys. Biol.
, vol.2
, Issue.2
, pp. 111-122
-
-
Andrews, S.S.1
-
3
-
-
33748520215
-
Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
-
Andrews S S and Bray D 2004 Stochastic simulation of chemical reactions with spatial resolution and single molecule detail Phys. Biol. 1 137-51
-
(2004)
Phys. Biol.
, vol.1
, Issue.3
, pp. 137-151
-
-
Andrews, S.S.1
Bray, D.2
-
6
-
-
11144236161
-
A walk-through of the yeast mating pheromone response pathway
-
Bardwell L 2005 A walk-through of the yeast mating pheromone response pathway Peptides 26 339-50
-
(2005)
Peptides
, vol.26
, Issue.2
, pp. 339-350
-
-
Bardwell, L.1
-
7
-
-
0025780592
-
Monte Carlo simulation of miniature endplate current generation in the vertebrate neuromuscular junction
-
Bartol T M J, Land B R, Salpeter E E and Salpeter M M 1991 Monte Carlo simulation of miniature endplate current generation in the vertebrate neuromuscular junction Biophys. J. 59 1290-307
-
(1991)
Biophys. J.
, vol.59
, Issue.6
, pp. 1290-1307
-
-
Bartol, T.M.J.1
Land, B.R.2
Salpeter, E.E.3
Salpeter, M.M.4
-
8
-
-
3042813458
-
Computer simulation of small molecule permeation across a lipid bilayer: Dependence on bilayer properties and solute volume, size, and cross-sectional area
-
Bemporad D, Luttmann C and Essex J W 2004 Computer simulation of small molecule permeation across a lipid bilayer: dependence on bilayer properties and solute volume, size, and cross-sectional area Biophys. J. 87 1-13
-
(2004)
Biophys. J.
, vol.87
, Issue.1
, pp. 1-13
-
-
Bemporad, D.1
Luttmann, C.2
Essex, J.W.3
-
10
-
-
0020623314
-
The molecular mechanism of action of the proton ionophore FCCP (carbonylcyanide p-trifluoromethoxyphenylhydrazone)
-
Benz R and McLaughlin S 1983 The molecular mechanism of action of the proton ionophore FCCP (carbonylcyanide p-trifluoromethoxyphenylhydrazone) Biophys. J. 41 381-98
-
(1983)
Biophys. J.
, vol.41
, Issue.3
, pp. 381-398
-
-
Benz, R.1
McLaughlin, S.2
-
13
-
-
34548692771
-
Multistage adsorption of diffusing macromolecules and viruses
-
Chou T and D'Orsogna M R 2007 Multistage adsorption of diffusing macromolecules and viruses J. Chem. Phys. 127 105101
-
(2007)
J. Chem. Phys.
, vol.127
, Issue.10
, pp. 105101
-
-
Chou, T.1
D'Orsogna, M.R.2
-
14
-
-
22244450050
-
Evidence for ectopic neurotransmission at a neuronal synapse
-
Coggan J S et al 2005 Evidence for ectopic neurotransmission at a neuronal synapse Science 309 446-51
-
(2005)
Science
, vol.309
, Issue.5733
, pp. 446-451
-
-
Coggan, J.S.1
-
17
-
-
0032900409
-
Protein mobility in the cytoplasm of Escherichia coli
-
Elowitz M B, Surette M G, Wolf P-E, Stock J B and Leibler S 1999 Protein mobility in the cytoplasm of Escherichia coli J. Bacteriol. 181 197-203
-
(1999)
J. Bacteriol.
, vol.181
, pp. 197-203
-
-
Elowitz, M.B.1
Surette, M.G.2
Wolf, P.-E.3
Stock, J.B.4
Leibler, S.5
-
18
-
-
34147128541
-
Reactive boundary conditions for stochastic simulations of reaction-diffusion processes
-
Erban R and Chapman S J 2007 Reactive boundary conditions for stochastic simulations of reaction-diffusion processes Phys. Biol. 4 16-28
-
(2007)
Phys. Biol.
, vol.4
, Issue.1
, pp. 16-28
-
-
Erban, R.1
Chapman, S.J.2
-
19
-
-
0032352086
-
The third boundary condition-was it Robin's
-
Gustafson K and Abe T 1998 The third boundary condition-was it Robin's Math. Intelligencer 20 63-71
-
(1998)
Math. Intelligencer
, vol.20
, Issue.1
, pp. 63-71
-
-
Gustafson, K.1
Abe, T.2
-
21
-
-
33845368513
-
COPASI-a COmplex PAthway SImulator
-
Hoops S et al 2006 COPASI-a COmplex PAthway SImulator Bioinformatics 22 3067-74
-
(2006)
Bioinformatics
, vol.22
, Issue.24
, pp. 3067-3074
-
-
Hoops, S.1
-
22
-
-
55149086309
-
Fast Monte Carlo simulation methods for biological reaction-diffusion systems in solution and on surfaces
-
Kerr R A et al 2008 Fast Monte Carlo simulation methods for biological reaction-diffusion systems in solution and on surfaces SIAM J. Sci. Comput. 30 3126-49
-
(2008)
SIAM J. Sci. Comput.
, vol.30
, Issue.6
, pp. 3126-3149
-
-
Kerr, R.A.1
-
23
-
-
31044441342
-
Division accuracy in a stochastic model of Min oscillations in Escherichia coli
-
Kerr R A, Levine H, Sejnowski T J and Rappel W-J 2006 Division accuracy in a stochastic model of Min oscillations in Escherichia coli Proc. Natl Acad. Sci. USA 103 347-52
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, Issue.2
, pp. 347-352
-
-
Kerr, R.A.1
Levine, H.2
Sejnowski, T.J.3
Rappel, W.-J.4
-
24
-
-
4444272353
-
Modelling the dynamics of the yeast pheromone pathway
-
Kofahl B and Klipp E 2004 Modelling the dynamics of the yeast pheromone pathway Yeast 21 831-50
-
(2004)
Yeast
, vol.21
, Issue.10
, pp. 831-850
-
-
Kofahl, B.1
Klipp, E.2
-
25
-
-
33645992160
-
A 3D Monte Carlo analysis of the role of dyadic space geometry in spark generation
-
Koh X, Srinivasan B, Ching H S and Levchenko A 2006 A 3D Monte Carlo analysis of the role of dyadic space geometry in spark generation Biophys. J. 90 1999-2014
-
(2006)
Biophys. J.
, vol.90
, Issue.6
, pp. 1999-2014
-
-
Koh, X.1
Srinivasan, B.2
Ching, H.S.3
Levchenko, A.4
-
27
-
-
4043158815
-
The constitution and fundamental properties of solids and liquids: I. Solids
-
Langmuir I 1916 The constitution and fundamental properties of solids and liquids: I. Solids J. Am. Chem. Soc. 38 2221-95
-
(1916)
J. Am. Chem. Soc.
, vol.38
, Issue.11
, pp. 2221-2295
-
-
Langmuir, I.1
-
28
-
-
0034705227
-
Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties
-
Levchenko A, Bruck J and Sternberg P W 2000 Scaffold proteins may biphasically affect the levels of mitogen-activated protein kinase signaling and reduce its threshold properties Proc. Natl Acad. Sci. USA 97 5818-23
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, Issue.11
, pp. 5818-5823
-
-
Levchenko, A.1
Bruck, J.2
Sternberg, P.W.3
-
29
-
-
33646243208
-
Changing cellular location of CheZ predicted by molecular simulations
-
Lipkow K 2006 Changing cellular location of CheZ predicted by molecular simulations PLoS Comp. Biol. 2 e39
-
(2006)
PLoS Comp. Biol.
, vol.2
, Issue.4
, pp. 39
-
-
Lipkow, K.1
-
30
-
-
11144264728
-
Simulated diffusion of CheYp through the cytoplasm of E. coli
-
Lipkow K, Andrews S S and Bray D 2005 Simulated diffusion of CheYp through the cytoplasm of E. coli J. Bacteriol. 187 45-53
-
(2005)
J. Bacteriol.
, vol.187
, Issue.1
, pp. 45-53
-
-
Lipkow, K.1
Andrews, S.S.2
Bray, D.3
-
31
-
-
61349161193
-
Model for protein concentration gradients in the cytoplasm
-
Lipkow K and Odde D J 2008 Model for protein concentration gradients in the cytoplasm Cell. Mol. Bioeng. 1 84-92
-
(2008)
Cell. Mol. Bioeng.
, vol.1
, Issue.1
, pp. 84-92
-
-
Lipkow, K.1
Odde, D.J.2
-
32
-
-
0035478586
-
The virtual cell: A software environment for computational cell biology
-
Loew L M and Schaff J C 2001 The virtual cell: a software environment for computational cell biology Trends Biotech. 19 401-6
-
(2001)
Trends Biotech.
, vol.19
, Issue.10
, pp. 401-406
-
-
Loew, L.M.1
Schaff, J.C.2
-
33
-
-
0030045955
-
Permeation of protons, potassium ions, and small polar molecules through phospholipid bilayers as a function of membrane thickness
-
Paula S, Volkov A G, van Hoek A N, Haines T H and Deamer D W 1996 Permeation of protons, potassium ions, and small polar molecules through phospholipid bilayers as a function of membrane thickness Biophys. J. 70 339-48
-
(1996)
Biophys. J.
, vol.70
, Issue.1
, pp. 339-348
-
-
Paula, S.1
Volkov, A.G.2
Van Hoek, A.N.3
Haines, T.H.4
Deamer, D.W.5
-
35
-
-
24344437156
-
Microbial cell modeling via reacting diffusive particles
-
Plimpton S J and Slepoy A 2005 Microbial cell modeling via reacting diffusive particles J. Phys.: Conf. Ser. 16 305-9
-
(2005)
J. Phys.: Conf. Ser.
, vol.16
, pp. 305-309
-
-
Plimpton, S.J.1
Slepoy, A.2
-
37
-
-
0032168881
-
Membrane recruitment of the kinase cascade scaffold protein Ste5 by the G-beta-gamma complex underlies activation of the yeast pheromone response pathway
-
Pryciak P M and Huntress F A 1998 Membrane recruitment of the kinase cascade scaffold protein Ste5 by the G-beta-gamma complex underlies activation of the yeast pheromone response pathway Genes Dev. 12 2684-97
-
(1998)
Genes Dev.
, vol.12
, Issue.17
, pp. 2684-2697
-
-
Pryciak, P.M.1
Huntress, F.A.2
-
38
-
-
0037078982
-
Control, exploitation, and tolerance of intracellular noise
-
Rao C V, Wolf D M and Arkin A P 2002 Control, exploitation, and tolerance of intracellular noise Nature 420 231-7
-
(2002)
Nature
, vol.420
, Issue.6912
, pp. 231-237
-
-
Rao, C.V.1
Wolf, D.M.2
Arkin, A.P.3
-
40
-
-
84984083601
-
Adsorption rate constants from chromatography
-
Schneider P and Smith J M 1968 Adsorption rate constants from chromatography AIChE J. 14 762-71
-
(1968)
AIChE J.
, vol.14
, Issue.5
, pp. 762-771
-
-
Schneider, P.1
Smith, J.M.2
-
43
-
-
0345863934
-
The CyberCell Database (CCDB): A comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
-
Sundararaj S et al 2004 The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli Nucleic Acids Res. 32 D293-5
-
(2004)
Nucleic Acids Res.
, vol.32
, Issue.90
-
-
Sundararaj, S.1
-
44
-
-
77953651373
-
-
Wolfram Research Inc. 2009 Mathematica 7.0 (Champaign, IL: Wolfram Research Inc.)
-
(2009)
Mathematica 7.0
-
-
|