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Volumn 31, Issue 21, 2012, Pages 2359-2373

IndOR: A new statistical procedure to test for SNP-SNP epistasis in genome-wide association studies

Author keywords

Crohn's disease; Epistasis; Genome wide association studies; Wald statistics

Indexed keywords

ACCURACY; ARTICLE; CASE CONTROL STUDY; CONTROLLED STUDY; CROHN DISEASE; DISEASE MODEL; EPISTASIS; FEASIBILITY STUDY; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENETIC ASSOCIATION; GENOTYPE PHENOTYPE CORRELATION; INDEPENDENCE BASED ODDS RATIO METHOD; INTERMETHOD COMPARISON; MATHEMATICAL COMPUTING; OUTCOME ASSESSMENT; POWER ANALYSIS; PROBABILITY; PROCESS DEVELOPMENT; PROCESS MODEL; QUALITY CONTROL; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS; STATISTICAL DISTRIBUTION; STATISTICAL SIGNIFICANCE; SYSTEMATIC ERROR;

EID: 84865614199     PISSN: 02776715     EISSN: 10970258     Source Type: Journal    
DOI: 10.1002/sim.5364     Document Type: Article
Times cited : (12)

References (56)
  • 1
    • 84969213492 scopus 로고    scopus 로고
    • Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
    • WTCCC. June
    • WTCCC. Genome-wide association study of 14, 000 cases of seven common diseases and 3, 000 shared controls. Nature June 2007; 447:661-678.
    • (2007) Nature , vol.447 , pp. 661-678
  • 3
    • 55549147191 scopus 로고    scopus 로고
    • Personal genomes: the case of the missing heritability
    • Maher B. Personal genomes: the case of the missing heritability. Nature 2008; 456:18-21.
    • (2008) Nature , vol.456 , pp. 18-21
    • Maher, B.1
  • 6
    • 0345411335 scopus 로고    scopus 로고
    • The ubiquitous nature of epistasis in determining susceptibility to common human diseases
    • Moore JH. The ubiquitous nature of epistasis in determining susceptibility to common human diseases. Human Heredity 2003; 56:73-82.
    • (2003) Human Heredity , vol.56 , pp. 73-82
    • Moore, J.H.1
  • 7
    • 54149088214 scopus 로고    scopus 로고
    • Epistasis, the essential role of gene interactions in the structure and evolution of genetic systems
    • Phillips PC. Epistasis, the essential role of gene interactions in the structure and evolution of genetic systems. Nature Review Genetics 2008; 9:855-867.
    • (2008) Nature Review Genetics , vol.9 , pp. 855-867
    • Phillips, P.C.1
  • 8
    • 0033940280 scopus 로고    scopus 로고
    • A complete enumeration and classification of two-locus disease models
    • Li W, Reich J. A complete enumeration and classification of two-locus disease models. Human Heredity 2000; 50(6):334-349.
    • (2000) Human Heredity , vol.50 , Issue.6 , pp. 334-349
    • Li, W.1    Reich, J.2
  • 9
    • 41949132217 scopus 로고    scopus 로고
    • A complete classification of epistatic two-locus models
    • Hallgrimsdottir IB, Yuster DS. A complete classification of epistatic two-locus models. BMC Genetics 2008; 9(17).
    • (2008) BMC Genetics , vol.9 , Issue.17
    • Hallgrimsdottir, I.B.1    Yuster, D.S.2
  • 11
    • 0036797562 scopus 로고    scopus 로고
    • Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans
    • July
    • Cordell HJ. Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans. Human Molecular Genetics July 2002; 11(20):2463-2468.
    • (2002) Human Molecular Genetics , vol.11 , Issue.20 , pp. 2463-2468
    • Cordell, H.J.1
  • 12
    • 16844366786 scopus 로고    scopus 로고
    • Genome-wide strategies for detecting multiple loci that influence complex diseases
    • April
    • Marchini J, Donnelly P, Cardon LR. Genome-wide strategies for detecting multiple loci that influence complex diseases. Nature Genetics April 2005; 37(4):413-417.
    • (2005) Nature Genetics , vol.37 , Issue.4 , pp. 413-417
    • Marchini, J.1    Donnelly, P.2    Cardon, L.R.3
  • 14
    • 33751074962 scopus 로고    scopus 로고
    • Test for interaction between two unlinked loci
    • November
    • Zhao J, Jin L, Xiong M. Test for interaction between two unlinked loci. The American Journal of Human Genetics November 2006; 79(5):831-845.
    • (2006) The American Journal of Human Genetics , vol.79 , Issue.5 , pp. 831-845
    • Zhao, J.1    Jin, L.2    Xiong, M.3
  • 16
    • 34548802636 scopus 로고    scopus 로고
    • Tuning reliefF for genome-wide genetic analysis
    • Moore J, White B. Tuning reliefF for genome-wide genetic analysis. Lecture Notes in Computer Science 2007; 4447:166-175.
    • (2007) Lecture Notes in Computer Science , vol.4447 , pp. 166-175
    • Moore, J.1    White, B.2
  • 17
    • 34548352849 scopus 로고    scopus 로고
    • Bayesian inference of epistatic interactions in case control studies
    • Zhang Y, Liu JS. Bayesian inference of epistatic interactions in case control studies. Nature Genetics 2007; 39:1167-1173.
    • (2007) Nature Genetics , vol.39 , pp. 1167-1173
    • Zhang, Y.1    Liu, J.S.2
  • 18
    • 37249080278 scopus 로고    scopus 로고
    • Penalized logistic regression for detecting gene interactions
    • Park MY, Hastie T. Penalized logistic regression for detecting gene interactions. Biostatistics 2008; 9:30-50.
    • (2008) Biostatistics , vol.9 , pp. 30-50
    • Park, M.Y.1    Hastie, T.2
  • 19
    • 70149125212 scopus 로고    scopus 로고
    • Restricted parameter space models for testing gene-gene interaction
    • Song M, Nicolae DL. Restricted parameter space models for testing gene-gene interaction. Genetic Epidemiology 2009; 33(5):386-393.
    • (2009) Genetic Epidemiology , vol.33 , Issue.5 , pp. 386-393
    • Song, M.1    Nicolae, D.L.2
  • 21
  • 22
    • 77954485448 scopus 로고    scopus 로고
    • On safari to random jungle: a fast implementation of random forests for high dimensional data
    • Schwarz D, Konig I, Ziegler A. On safari to random jungle: a fast implementation of random forests for high dimensional data. Bioinformatics 2010; 26:1752-1758.
    • (2010) Bioinformatics , vol.26 , pp. 1752-1758
    • Schwarz, D.1    Konig, I.2    Ziegler, A.3
  • 23
    • 78149255580 scopus 로고    scopus 로고
    • Rapid detection of gene-gene interactions in genome-wide association studies
    • Brinza D, Schultz M, Tesler G, Bafna V. Rapid detection of gene-gene interactions in genome-wide association studies. Bioinformatics 2010; 26(22):2856-2862.
    • (2010) Bioinformatics , vol.26 , Issue.22 , pp. 2856-2862
    • Brinza, D.1    Schultz, M.2    Tesler, G.3    Bafna, V.4
  • 26
    • 67349166946 scopus 로고    scopus 로고
    • Detecting gene-gene interactions that underlie human diseases
    • Cordell HJ. Detecting gene-gene interactions that underlie human diseases. Nature Review Genetics 2009; 10(2):392-404.
    • (2009) Nature Review Genetics , vol.10 , Issue.2 , pp. 392-404
    • Cordell, H.J.1
  • 27
    • 84971185409 scopus 로고
    • The correlation between relatives on the supposition of mendelian inheritance
    • Fisher RA. The correlation between relatives on the supposition of mendelian inheritance. Transactions of the Royal Society of Edinburgh 1918; 52:399-433.
    • (1918) Transactions of the Royal Society of Edinburgh , vol.52 , pp. 399-433
    • Fisher, R.A.1
  • 29
    • 11244293921 scopus 로고    scopus 로고
    • A global view of epistasis
    • January
    • Moore JH. A global view of epistasis. Nature Genetics January 2005; 37(1):13-14.
    • (2005) Nature Genetics , vol.37 , Issue.1 , pp. 13-14
    • Moore, J.H.1
  • 32
    • 84865625468 scopus 로고    scopus 로고
    • Statistical interaction in human genetics: how should we model it if we are looking for biological interaction?
    • Wang X, Elston CR, Zhu X. Statistical interaction in human genetics: how should we model it if we are looking for biological interaction? Nature Review Genetics 2011; 11:855-867.
    • (2011) Nature Review Genetics , vol.11 , pp. 855-867
    • Wang, X.1    Elston, C.R.2    Zhu, X.3
  • 33
    • 75649111609 scopus 로고    scopus 로고
    • Empirical tests for compositional epistasis
    • VanderWeel TJ. Empirical tests for compositional epistasis. Nature Reviews Genetics 2010; 11:166-166.
    • (2010) Nature Reviews Genetics , vol.11 , pp. 166-166
    • VanderWeel, T.J.1
  • 34
    • 84855661466 scopus 로고    scopus 로고
    • Travelling the world of gene-gene interactions
    • Steen KV. Travelling the world of gene-gene interactions. Briefings in Bioinformatics 2012; 13(1):1-19.
    • (2012) Briefings in Bioinformatics , vol.13 , Issue.1 , pp. 1-19
    • Steen, K.V.1
  • 35
    • 33748504973 scopus 로고    scopus 로고
    • A fast, unbiased and exact allelic test for case-control association studies
    • Guedj M, Wojcik J, Della-Chiesa E, Nuel G, Forner K. A fast, unbiased and exact allelic test for case-control association studies. Human Heredity 2006; 61:210-221.
    • (2006) Human Heredity , vol.61 , pp. 210-221
    • Guedj, M.1    Wojcik, J.2    Della-Chiesa, E.3    Nuel, G.4    Forner, K.5
  • 36
    • 78651386724 scopus 로고    scopus 로고
    • Does heritability hide in epistasis between linked SNPs?
    • Haig D. Does heritability hide in epistasis between linked SNPs? European Journal of Human Genetics 2011; 19:123-123.
    • (2011) European Journal of Human Genetics , vol.19 , pp. 123-123
    • Haig, D.1
  • 38
    • 77956428612 scopus 로고    scopus 로고
    • The effect of increasing control-to-case ratio on statistical power in a simulated case-control SNP association study
    • Kang M, Choi S, Koh I. The effect of increasing control-to-case ratio on statistical power in a simulated case-control SNP association study. Genomics and Informatics 2009; 7(3):148-151.
    • (2009) Genomics and Informatics , vol.7 , Issue.3 , pp. 148-151
    • Kang, M.1    Choi, S.2    Koh, I.3
  • 39
    • 77958596172 scopus 로고    scopus 로고
    • P-value based analysis for shared controls design in genome-wide association studies
    • Zaykin D, Kozbur DO. P-value based analysis for shared controls design in genome-wide association studies. Genetic Epidemiology 2010; 34(7):725-738.
    • (2010) Genetic Epidemiology , vol.34 , Issue.7 , pp. 725-738
    • Zaykin, D.1    Kozbur, D.O.2
  • 40
    • 70349629971 scopus 로고    scopus 로고
    • Using biological networks to search for interacting loci in genome-wide association studies
    • March
    • Emily M, Mailund T, Hein J, Schauser L, Schierup MH. Using biological networks to search for interacting loci in genome-wide association studies. European Journal of Human Genetics March 2009; 17:1231-1240.
    • (2009) European Journal of Human Genetics , vol.17 , pp. 1231-1240
    • Emily, M.1    Mailund, T.2    Hein, J.3    Schauser, L.4    Schierup, M.H.5
  • 41
    • 33846086800 scopus 로고    scopus 로고
    • String 7-recent developments in the integration and prediction of protein interactions
    • Mering CV, Jensen LJ, Kuhn M, et al. String 7-recent developments in the integration and prediction of protein interactions. Nucleic Acid Research 2007; 35:D358-D362.
    • (2007) Nucleic Acid Research , vol.35
    • Mering, C.V.1    Jensen, L.J.2    Kuhn, M.3
  • 44
    • 84873292643 scopus 로고    scopus 로고
    • Notes on the Odds-Ratio and the δ-Method.
    • Freedman DA. Notes on the Odds-Ratio and the δ-Method. http://www.stat.berkeley.edu/~census/oddsrat.pdf 2000.
    • Freedman, D.A.1
  • 46
    • 33947407252 scopus 로고    scopus 로고
    • Exploiting Hardy-Weinberg equilibrium for efficient screening of single SNP associations from case-control studies
    • Chen J, Chatterjee N. Exploiting Hardy-Weinberg equilibrium for efficient screening of single SNP associations from case-control studies. Human Heredity 2007; 63:196-204.
    • (2007) Human Heredity , vol.63 , pp. 196-204
    • Chen, J.1    Chatterjee, N.2
  • 48
    • 0015396013 scopus 로고
    • A model for the genetics of handedness
    • Levy J, Nagylaki T. A model for the genetics of handedness. Genetics 1972; 72:117-128.
    • (1972) Genetics , vol.72 , pp. 117-128
    • Levy, J.1    Nagylaki, T.2
  • 50
    • 30744434862 scopus 로고    scopus 로고
    • Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix
    • Li J, Ji L. Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix. Heredity 2005; 95:221-227.
    • (2005) Heredity , vol.95 , pp. 221-227
    • Li, J.1    Ji, L.2
  • 53
    • 34347391043 scopus 로고    scopus 로고
    • Allelic association studies of genome-wide association data can reveal errors in marker position assignements
    • Curtis D. Allelic association studies of genome-wide association data can reveal errors in marker position assignements. BMC Genetics 2007; 8.
    • (2007) BMC Genetics , vol.8
    • Curtis, D.1
  • 54
    • 46949101742 scopus 로고    scopus 로고
    • Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human dieases
    • Pattin KA, Moore JH. Exploiting the proteome to improve the genome-wide genetic analysis of epistasis in common human dieases. Human Genetics 2008; 124:19-29.
    • (2008) Human Genetics , vol.124 , pp. 19-29
    • Pattin, K.A.1    Moore, J.H.2
  • 55
    • 73149103718 scopus 로고    scopus 로고
    • Prioritizing GWAS results: a review of statistical methods and recommendations for their application
    • Cantor RM, Lange K, Sinsheimer JS. Prioritizing GWAS results: a review of statistical methods and recommendations for their application. The American Journal of Human Genetics 2010; 86:6-22.
    • (2010) The American Journal of Human Genetics , vol.86 , pp. 6-22
    • Cantor, R.M.1    Lange, K.2    Sinsheimer, J.S.3


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