메뉴 건너뛰기




Volumn 6, Issue 1, 2007, Pages

Multiple testing for SNP-SNP interactions

Author keywords

Adjustment; Association study; Gene gene; Maximally selected statistics; maxT; Optimal selection

Indexed keywords

ARTICLE; GENE EXPRESSION; GENETIC ASSOCIATION; GENETIC DISORDER; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM; STATISTICAL ANALYSIS; CHI SQUARE DISTRIBUTION; COMPUTER SIMULATION; GENE LINKAGE DISEQUILIBRIUM; GENETIC PREDISPOSITION; HUMAN;

EID: 37849033444     PISSN: None     EISSN: 15446115     Source Type: Journal    
DOI: 10.2202/1544-6115.1315     Document Type: Article
Times cited : (16)

References (42)
  • 1
    • 33746424002 scopus 로고    scopus 로고
    • On locating multiple interacting quantitative trait loci in intercross designs
    • Baierl, A., Bogdan, M., Frommlet, F., Futschik, A., 2006. On locating multiple interacting quantitative trait loci in intercross designs. Genetics 173, 1693-703.
    • (2006) Genetics , vol.173 , pp. 1693-1703
    • Baierl, A.1    Bogdan, M.2    Frommlet, F.3    Futschik, A.4
  • 2
    • 4544387440 scopus 로고    scopus 로고
    • A powerful strategy to account for multiple testing in the context of haplotype analysis
    • Becker, T., Knapp, M., 2004. A powerful strategy to account for multiple testing in the context of haplotype analysis. American Journal of Human Genetics 75, 561-570.
    • (2004) American Journal of Human Genetics , vol.75 , pp. 561-570
    • Becker, T.1    Knapp, M.2
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., Hochberg, Y., 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society B 57, 289-300.
    • (1995) Journal of the Royal Statistical Society B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0035733108 scopus 로고    scopus 로고
    • The control of the false discovery rate in multiple testing under dependency
    • Benjamini, Y., Yekutieli, D., 2001. The control of the false discovery rate in multiple testing under dependency. Annals of Statistics 29, 1165-1188.
    • (2001) Annals of Statistics , vol.29 , pp. 1165-1188
    • Benjamini, Y.1    Yekutieli, D.2
  • 5
    • 3142698408 scopus 로고    scopus 로고
    • Modifying the schwarz bayesian information criterion to locate multiple interacting quantitative trait loci
    • Bogdan, M., Ghosh, J. K., Doerge, R. W., 2004. Modifying the schwarz bayesian information criterion to locate multiple interacting quantitative trait loci. Genetics 167, 989-999.
    • (2004) Genetics , vol.167 , pp. 989-999
    • Bogdan, M.1    Ghosh, J.K.2    Doerge, R.W.3
  • 6
    • 33750533760 scopus 로고    scopus 로고
    • Maximally selected chi-square statistics and binary splits of nominal variables
    • Boulesteix, A.-L., 2006a. Maximally selected chi-square statistics and binary splits of nominal variables. Biometrical Journal 48, 838-848.
    • (2006) Biometrical Journal , vol.48 , pp. 838-848
    • Boulesteix, A.-L.1
  • 7
    • 33745662195 scopus 로고    scopus 로고
    • Maximally selected chi-square statistics for ordinal variables
    • Boulesteix, A. L., 2006b. Maximally selected chi-square statistics for ordinal variables. Biometrical Journal 48, 451-462.
    • (2006) Biometrical Journal , vol.48 , pp. 451-462
    • Boulesteix, A.L.1
  • 8
    • 34547152822 scopus 로고    scopus 로고
    • Maximally selected chi-square statistics and non-monotonic associations: An exact approach based on two cutpoints
    • Boulesteix, A.-L., Strobl, C., 2007. Maximally selected chi-square statistics and non-monotonic associations: an exact approach based on two cutpoints. Computational Statistics and Data Analysis 51, 6295-6306.
    • (2007) Computational Statistics and Data Analysis , vol.51 , pp. 6295-6306
    • Boulesteix, A.-L.1    Strobl, C.2
  • 9
    • 25444494481 scopus 로고    scopus 로고
    • Identification of interaction patterns and classification with applications to microarray data
    • Boulesteix, A. L., Tutz, G., 2006. Identification of interaction patterns and classification with applications to microarray data. Computational Statistics and Data Analysis 50, 783-802.
    • (2006) Computational Statistics and Data Analysis , vol.50 , pp. 783-802
    • Boulesteix, A.L.1    Tutz, G.2
  • 10
    • 0346252356 scopus 로고    scopus 로고
    • A CART-based method to discover emerging patterns in microarray data
    • Boulesteix, A. L., Tutz, G., Strimmer, K., 2003. A CART-based method to discover emerging patterns in microarray data. Bioinformatics 19, 2465-2472.
    • (2003) Bioinformatics , vol.19 , pp. 2465-2472
    • Boulesteix, A.L.1    Tutz, G.2    Strimmer, K.3
  • 12
    • 79959524146 scopus 로고    scopus 로고
    • Consortium, T. I. H., 2005. A haplotype map of the human genome. Nature 437, 1299-1320.
    • Consortium, T. I. H., 2005. A haplotype map of the human genome. Nature 437, 1299-1320.
  • 13
    • 0043203327 scopus 로고    scopus 로고
    • Multiple hypothesis testing in microarray experiments
    • Dudoit, S., Shaffer, J. P., Boldrick, J. C., 2003. Multiple hypothesis testing in microarray experiments. Statistical Science 18, 71-103.
    • (2003) Statistical Science , vol.18 , pp. 71-103
    • Dudoit, S.1    Shaffer, J.P.2    Boldrick, J.C.3
  • 14
    • 0035992248 scopus 로고    scopus 로고
    • Empirical bayes methods and false discovery rates for microarrays
    • Efron, B., Tibshirani, R., 2002. Empirical bayes methods and false discovery rates for microarrays. Genetic Epidemiology 23, 70-86.
    • (2002) Genetic Epidemiology , vol.23 , pp. 70-86
    • Efron, B.1    Tibshirani, R.2
  • 15
    • 37849014748 scopus 로고    scopus 로고
    • Genz, A, Bretz, F, Hothorn, T, 2006. The mvtnorm package. R package version 0.7-5. URL
    • Genz, A., Bretz, F., Hothorn, T., 2006. The mvtnorm package. R package version 0.7-5. URL http://CRAN.R-project.org/
  • 16
  • 17
    • 0042881041 scopus 로고    scopus 로고
    • Mathematical multi-locus approaches localizing complex human trait genes
    • Hoh, J., Ott, J., 2003. Mathematical multi-locus approaches localizing complex human trait genes. Nature Reviews 4, 701-709.
    • (2003) Nature Reviews , vol.4 , pp. 701-709
    • Hoh, J.1    Ott, J.2
  • 18
    • 23844467739 scopus 로고    scopus 로고
    • Holle, R., Happich, M., Lowel, H., Wichmann, H., Group, M. S., 2005. Kora-a research platform for population based health research. Gesundheitswesen 67, 19-25.
    • Holle, R., Happich, M., Lowel, H., Wichmann, H., Group, M. S., 2005. Kora-a research platform for population based health research. Gesundheitswesen 67, 19-25.
  • 22
    • 10744226206 scopus 로고    scopus 로고
    • Illig, T., Bongardt, F., Scḧopfer, A., Holler, R., M̈uller, S., Rathmann, W., et al., Group, K. S., 2003. The endotoxin receptor tlr4 polymorphism is not associated with diabetes or components of the metabolic syndrome. Diabetes 52, 2861-2864.
    • Illig, T., Bongardt, F., Scḧopfer, A., Holler, R., M̈uller, S., Rathmann, W., et al., Group, K. S., 2003. The endotoxin receptor tlr4 polymorphism is not associated with diabetes or components of the metabolic syndrome. Diabetes 52, 2861-2864.
  • 24
    • 12744269194 scopus 로고    scopus 로고
    • Identifying interacting SNPs using Monte Carlo logic regression
    • Kooperberg, C., Ruczinski, I., 2005. Identifying interacting SNPs using Monte Carlo logic regression. Genetic Epidemiology 28, 157-170.
    • (2005) Genetic Epidemiology , vol.28 , pp. 157-170
    • Kooperberg, C.1    Ruczinski, I.2
  • 26
    • 25444453244 scopus 로고    scopus 로고
    • Screening large-scale association study data: Exploiting interactions using random forests
    • Lunetta, K. L., Hayward, L. B., Segal, J., Eerdewegh, P. V., 2004. Screening large-scale association study data: exploiting interactions using random forests. BMC Genetics 5, 32.
    • (2004) BMC Genetics , vol.5 , pp. 32
    • Lunetta, K.L.1    Hayward, L.B.2    Segal, J.3    Eerdewegh, P.V.4
  • 27
    • 16844366786 scopus 로고    scopus 로고
    • Genome-wide strategies for detecting multiple loci that influence complex diseases
    • Marchini, J., Donelly, P., Cardon, L. R., 2005. Genome-wide strategies for detecting multiple loci that influence complex diseases. Nature Genetics 37, 413-417.
    • (2005) Nature Genetics , vol.37 , pp. 413-417
    • Marchini, J.1    Donelly, P.2    Cardon, L.R.3
  • 28
    • 0035084663 scopus 로고    scopus 로고
    • A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation
    • Nelson, M., Kardia, S., Ferrell, R., Sing, C., 2001. A combinatorial partitioning method to identify multilocus genotypic partitions that predict quantitative trait variation. Genome Research 11, 458-470.
    • (2001) Genome Research , vol.11 , pp. 458-470
    • Nelson, M.1    Kardia, S.2    Ferrell, R.3    Sing, C.4
  • 29
    • 37549056720 scopus 로고    scopus 로고
    • Penalized logistic regression for detecting gene interactions
    • accepted
    • Park, M. Y., Hastie, T., 2007. Penalized logistic regression for detecting gene interactions. Biostatistics, (accepted).
    • (2007) Biostatistics
    • Park, M.Y.1    Hastie, T.2
  • 31
    • 12744255343 scopus 로고    scopus 로고
    • Exploring interactions in high dimensional genomic data: An overview of logic regression, with applications
    • Ruczinski, I., Kooperberg, C., LeBlanc, M., 2004. Exploring interactions in high dimensional genomic data: an overview of logic regression, with applications. Journal of Multivariate Analysis 90, 178-195.
    • (2004) Journal of Multivariate Analysis , vol.90 , pp. 178-195
    • Ruczinski, I.1    Kooperberg, C.2    LeBlanc, M.3
  • 32
    • 0031466983 scopus 로고    scopus 로고
    • From genotypes to genes: Doubling the sample size
    • Sasieni, H. D., 1997. From genotypes to genes: doubling the sample size. Biometrics 53, 1253-1261.
    • (1997) Biometrics , vol.53 , pp. 1253-1261
    • Sasieni, H.D.1
  • 33
    • 37249085147 scopus 로고    scopus 로고
    • Identification of SNP interactions using logic regression
    • doi:10.1093/biostatistics/kxm024
    • Schwender, H., Ickstadt, K., 2007. Identification of SNP interactions using logic regression. Biostatistics doi:10.1093/biostatistics/kxm024.
    • (2007) Biostatistics
    • Schwender, H.1    Ickstadt, K.2
  • 42
    • 23844472247 scopus 로고    scopus 로고
    • Kora-gen-resource for population genetics, controls and a broad spectrum of disease phenotypes
    • Wichmann, H.-E., Gieger, C., Illig, T., 2005. Kora-gen-resource for population genetics, controls and a broad spectrum of disease phenotypes. Gesundheitswesen 67, 26-30.
    • (2005) Gesundheitswesen , vol.67 , pp. 26-30
    • Wichmann, H.-E.1    Gieger, C.2    Illig, T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.