메뉴 건너뛰기




Volumn 437, Issue , 2012, Pages 262-269

Environmental surveillance of norovirus in Argentina revealed distinct viral diversity patterns, seasonality and spatio-temporal diffusion processes

Author keywords

Environmental virology; Fecal contamination; Norovirus

Indexed keywords

ARGENTINA; BUENOS AIRES; DIFFUSION ANALYSIS; DIFFUSION PROCESS; ENTERIC VIRUS; ENVIRONMENTAL SURVEILLANCE; ENVIRONMENTAL VIROLOGY; FECAL CONTAMINATION; MOLECULAR ANALYSIS; MOST RECENT COMMON ANCESTORS; NOROVIRUS; POPULATION SIZES; SEASONALITY; SEWAGE DISCHARGES; SPATIO-TEMPORAL; SUBSTITUTION RATES; VIRAL GENOME;

EID: 84865574324     PISSN: 00489697     EISSN: 18791026     Source Type: Journal    
DOI: 10.1016/j.scitotenv.2012.08.033     Document Type: Article
Times cited : (35)

References (45)
  • 1
    • 72049117882 scopus 로고    scopus 로고
    • Viral load and genotypes of noroviruses in symptomatic and asymptomatic children in Southeastern Brazil
    • Barreira D.M., Ferreira M.S., Fumian T.M., Checon R., de Sadovsky A.D., Leite J.P., et al. Viral load and genotypes of noroviruses in symptomatic and asymptomatic children in Southeastern Brazil. J Clin Virol 2010, 47:60-64.
    • (2010) J Clin Virol , vol.47 , pp. 60-64
    • Barreira, D.M.1    Ferreira, M.S.2    Fumian, T.M.3    Checon, R.4    de Sadovsky, A.D.5    Leite, J.P.6
  • 2
    • 77749319411 scopus 로고    scopus 로고
    • Evidence of emergence of new GGII.4 norovirus variants from gastroenteritis outbreak survey in France during the 2007-to-2008 and 2008-to-2009 winter seasons
    • Belliot G., Kamel A.H., Estienney M., Ambert-Balay K., Pothier P. Evidence of emergence of new GGII.4 norovirus variants from gastroenteritis outbreak survey in France during the 2007-to-2008 and 2008-to-2009 winter seasons. J Clin Microbiol 2010, 48:994-998.
    • (2010) J Clin Microbiol , vol.48 , pp. 994-998
    • Belliot, G.1    Kamel, A.H.2    Estienney, M.3    Ambert-Balay, K.4    Pothier, P.5
  • 3
    • 80053959139 scopus 로고    scopus 로고
    • SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics
    • Bielejec F., Rambaut A., Suchard M.A., Lemey P. SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics 2011, 27:2910-2912.
    • (2011) Bioinformatics , vol.27 , pp. 2910-2912
    • Bielejec, F.1    Rambaut, A.2    Suchard, M.A.3    Lemey, P.4
  • 8
    • 79955476677 scopus 로고    scopus 로고
    • Mechanisms of GII.4 norovirus evolution
    • Bull R.A., White P.A. Mechanisms of GII.4 norovirus evolution. Trends Microbiol 2011, 19:233-240.
    • (2011) Trends Microbiol , vol.19 , pp. 233-240
    • Bull, R.A.1    White, P.A.2
  • 9
    • 77950397317 scopus 로고    scopus 로고
    • Rapid evolution of pandemic noroviruses of the GII.4 lineage
    • Bull R.A., Eden J.S., Rawlinson W.D., White P.A. Rapid evolution of pandemic noroviruses of the GII.4 lineage. PLoS Pathog 2010, 6:e1000831.
    • (2010) PLoS Pathog , vol.6
    • Bull, R.A.1    Eden, J.S.2    Rawlinson, W.D.3    White, P.A.4
  • 10
    • 80052264435 scopus 로고    scopus 로고
    • Molecular epidemiology of norovirus gastroenteritis in children in Jiangmen, China, 2005-2007
    • Dai Y.C., Hu G.F., Zhang X.F., Song C.L., Xiang W.L., Wu X.B., et al. Molecular epidemiology of norovirus gastroenteritis in children in Jiangmen, China, 2005-2007. Arch Virol 2011, 156:1641-1646.
    • (2011) Arch Virol , vol.156 , pp. 1641-1646
    • Dai, Y.C.1    Hu, G.F.2    Zhang, X.F.3    Song, C.L.4    Xiang, W.L.5    Wu, X.B.6
  • 11
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 2007, 7:214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 12
    • 17744381574 scopus 로고    scopus 로고
    • Bayesian coalescent inference of past population dynamics from molecular sequences
    • Drummond A.J., Rambaut A., Shapiro B., Pybus O.G. Bayesian coalescent inference of past population dynamics from molecular sequences. Mol Biol Evol 2005, 22:1185-1192.
    • (2005) Mol Biol Evol , vol.22 , pp. 1185-1192
    • Drummond, A.J.1    Rambaut, A.2    Shapiro, B.3    Pybus, O.G.4
  • 14
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: minimum change for a specific tree topology
    • Fitch W.M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971, 20:406-416.
    • (1971) Syst Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 15
    • 0036431430 scopus 로고    scopus 로고
    • Evaluation of integrated cell culture-PCR (C-PCR) for virological analysis of environmental samples
    • Greening G.E., Hewitt J., Lewis G.D. Evaluation of integrated cell culture-PCR (C-PCR) for virological analysis of environmental samples. J Appl Microbiol 2002, 93:745-750.
    • (2002) J Appl Microbiol , vol.93 , pp. 745-750
    • Greening, G.E.1    Hewitt, J.2    Lewis, G.D.3
  • 16
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 2003, 52:696-704.
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 17
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 1999, 95-98.
    • (1999) Nucleic Acids Symp Ser , pp. 95-98
    • Hall, T.A.1
  • 18
    • 80054043113 scopus 로고    scopus 로고
    • Influence of wastewater treatment process and the population size on human virus profiles in wastewater
    • Hewitt J., Leonard M., Greening G.E., Lewis G.D. Influence of wastewater treatment process and the population size on human virus profiles in wastewater. Water Res 2011, 45:6267-6276.
    • (2011) Water Res , vol.45 , pp. 6267-6276
    • Hewitt, J.1    Leonard, M.2    Greening, G.E.3    Lewis, G.D.4
  • 19
    • 23044505476 scopus 로고    scopus 로고
    • Persistence of oral polio vaccine virus after its removal from the immunisation schedule in New Zealand
    • Huang Q.S., Greening G., Baker M.G., Grimwood K., Hewitt J., Hulston D., et al. Persistence of oral polio vaccine virus after its removal from the immunisation schedule in New Zealand. Lancet 2005, 366:394-396.
    • (2005) Lancet , vol.366 , pp. 394-396
    • Huang, Q.S.1    Greening, G.2    Baker, M.G.3    Grimwood, K.4    Hewitt, J.5    Hulston, D.6
  • 20
    • 0036196006 scopus 로고    scopus 로고
    • Development of a virus concentration method and its application to detection of enterovirus and norwalk virus from coastal seawater
    • Katayama H., Shimasaki A., Ohgaki S. Development of a virus concentration method and its application to detection of enterovirus and norwalk virus from coastal seawater. Appl Environ Microbiol 2002, 68:1033-1039.
    • (2002) Appl Environ Microbiol , vol.68 , pp. 1033-1039
    • Katayama, H.1    Shimasaki, A.2    Ohgaki, S.3
  • 22
    • 0023789366 scopus 로고
    • Polyethylene glycol precipitation for recovery of pathogenic viruses, including hepatitis A virus and human rotavirus, from oyster, water, and sediment samples
    • Lewis G.D., Metcalf T.G. Polyethylene glycol precipitation for recovery of pathogenic viruses, including hepatitis A virus and human rotavirus, from oyster, water, and sediment samples. Appl Environ Microbiol 1988, 54:1983-1988.
    • (1988) Appl Environ Microbiol , vol.54 , pp. 1983-1988
    • Lewis, G.D.1    Metcalf, T.G.2
  • 25
    • 78149498024 scopus 로고    scopus 로고
    • Emerging norovirus GII.4 2008 variant detected in hospitalised paediatric patients in South Africa
    • Mans J., de Villiers J.C., du Plessis N.M., Avenant T., Taylor M.B. Emerging norovirus GII.4 2008 variant detected in hospitalised paediatric patients in South Africa. J Clin Virol 2010, 49:258-264.
    • (2010) J Clin Virol , vol.49 , pp. 258-264
    • Mans, J.1    de Villiers, J.C.2    du Plessis, N.M.3    Avenant, T.4    Taylor, M.B.5
  • 26
    • 0036246644 scopus 로고    scopus 로고
    • Sequence diversity of human caliciviruses recovered from children with diarrhea in Mendoza, Argentina, 1995-1998
    • Martinez N., Espul C., Cuello H., Zhong W., Jiang X., Matson D.O., et al. Sequence diversity of human caliciviruses recovered from children with diarrhea in Mendoza, Argentina, 1995-1998. J Med Virol 2002, 67:289-298.
    • (2002) J Med Virol , vol.67 , pp. 289-298
    • Martinez, N.1    Espul, C.2    Cuello, H.3    Zhong, W.4    Jiang, X.5    Matson, D.O.6
  • 27
    • 0034043929 scopus 로고    scopus 로고
    • Cold weather seasonality of gastroenteritis associated with Norwalk-like viruses
    • Mounts A.W., Ando T., Koopmans M., Bresee J.S., Noel J., Glass R.I. Cold weather seasonality of gastroenteritis associated with Norwalk-like viruses. J Infect Dis 2000, 181(Suppl. 2):S284-S287.
    • (2000) J Infect Dis , vol.181 , Issue.SUPPL. 2
    • Mounts, A.W.1    Ando, T.2    Koopmans, M.3    Bresee, J.S.4    Noel, J.5    Glass, R.I.6
  • 28
    • 42649136257 scopus 로고    scopus 로고
    • Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty
    • Parker J., Rambaut A., Pybus O.G. Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. Infect Genet Evol 2008, 8:239-246.
    • (2008) Infect Genet Evol , vol.8 , pp. 239-246
    • Parker, J.1    Rambaut, A.2    Pybus, O.G.3
  • 30
    • 84874955592 scopus 로고    scopus 로고
    • Evaluation of concentration efficiency of the Pseudomonas aeruginosa phage PP7 in various water matrixes by different methods
    • Poma H.R., Rajal V.B., Blanco Fernandez M.D., Barril P.A., Giordano M.O., Masachessi G., et al. Evaluation of concentration efficiency of the Pseudomonas aeruginosa phage PP7 in various water matrixes by different methods. Environ Monit Assess 2012, 10.1007/s10661-012-2731-9.
    • (2012) Environ Monit Assess
    • Poma, H.R.1    Rajal, V.B.2    Blanco Fernandez, M.D.3    Barril, P.A.4    Giordano, M.O.5    Masachessi, G.6
  • 31
    • 45849154165 scopus 로고    scopus 로고
    • JModelTest: phylogenetic model averaging
    • Posada D. jModelTest: phylogenetic model averaging. Mol Biol Evol 2008, 25:1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 32
    • 33847715501 scopus 로고    scopus 로고
    • Validation of hollow fiber ultrafiltration and real-time PCR using bacteriophage PP7 as surrogate for the quantification of viruses from water samples
    • Rajal V.B., McSwain B.S., Thompson D.E., Leutenegger C.M., Kildare B.J., Wuertz S. Validation of hollow fiber ultrafiltration and real-time PCR using bacteriophage PP7 as surrogate for the quantification of viruses from water samples. Water Res 2007, 41:1411-1422.
    • (2007) Water Res , vol.41 , pp. 1411-1422
    • Rajal, V.B.1    McSwain, B.S.2    Thompson, D.E.3    Leutenegger, C.M.4    Kildare, B.J.5    Wuertz, S.6
  • 33
    • 32344447845 scopus 로고    scopus 로고
    • Anaerobic treatment of domestic wastewater in subtropical regions
    • PhD Thesis, University of Wageningen, The Netherlands
    • Seghezzo L. Anaerobic treatment of domestic wastewater in subtropical regions. PhD Thesis, University of Wageningen, The Netherlands. 2004.
    • (2004)
    • Seghezzo, L.1
  • 35
    • 70349315360 scopus 로고    scopus 로고
    • Norovirus illness is a global problem: emergence and spread of norovirus GII.4 variants, 2001-2007
    • Siebenga J.J., Vennema H., Zheng D.P., Vinje J., Lee B.E., Pang X.L., et al. Norovirus illness is a global problem: emergence and spread of norovirus GII.4 variants, 2001-2007. J Infect Dis 2009, 200:802-812.
    • (2009) J Infect Dis , vol.200 , pp. 802-812
    • Siebenga, J.J.1    Vennema, H.2    Zheng, D.P.3    Vinje, J.4    Lee, B.E.5    Pang, X.L.6
  • 36
    • 77954057885 scopus 로고    scopus 로고
    • Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants
    • Siebenga J.J., Lemey P., Kosakovsky Pond S.L., Rambaut A., Vennema H., Koopmans M. Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants. PLoS Pathog 2010, 6:e1000884.
    • (2010) PLoS Pathog , vol.6
    • Siebenga, J.J.1    Lemey, P.2    Kosakovsky Pond, S.L.3    Rambaut, A.4    Vennema, H.5    Koopmans, M.6
  • 37
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 38
    • 39349106670 scopus 로고    scopus 로고
    • Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b
    • Tu E.T., Bull R.A., Greening G.E., Hewitt J., Lyon M.J., Marshall J.A., et al. Epidemics of gastroenteritis during 2006 were associated with the spread of norovirus GII.4 variants 2006a and 2006b. Clin Infect Dis 2008, 46:413-420.
    • (2008) Clin Infect Dis , vol.46 , pp. 413-420
    • Tu, E.T.1    Bull, R.A.2    Greening, G.E.3    Hewitt, J.4    Lyon, M.J.5    Marshall, J.A.6
  • 39
    • 0036701645 scopus 로고    scopus 로고
    • Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction
    • Vennema H., de Bruin E., Koopmans M. Rational optimization of generic primers used for Norwalk-like virus detection by reverse transcriptase polymerase chain reaction. J Clin Virol 2002, 25:233-235.
    • (2002) J Clin Virol , vol.25 , pp. 233-235
    • Vennema, H.1    de Bruin, E.2    Koopmans, M.3
  • 42
    • 1542310242 scopus 로고    scopus 로고
    • Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses
    • Vinje J., Hamidjaja R.A., Sobsey M.D. Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J Virol Methods 2004, 116:109-117.
    • (2004) J Virol Methods , vol.116 , pp. 109-117
    • Vinje, J.1    Hamidjaja, R.A.2    Sobsey, M.D.3
  • 43
    • 0035172763 scopus 로고    scopus 로고
    • Identification of shared populations of human immunodeficiency virus type 1 infecting microglia and tissue macrophages outside the central nervous system
    • Wang T.H., Donaldson Y.K., Brettle R.P., Bell J.E., Simmonds P. Identification of shared populations of human immunodeficiency virus type 1 infecting microglia and tissue macrophages outside the central nervous system. J Virol 2001, 75:11686-11699.
    • (2001) J Virol , vol.75 , pp. 11686-11699
    • Wang, T.H.1    Donaldson, Y.K.2    Brettle, R.P.3    Bell, J.E.4    Simmonds, P.5
  • 44
    • 83555179093 scopus 로고    scopus 로고
    • Prevalence and diversity of norovirus genogroups I and II in Hong Kong marine waters and detection by real-time PCR
    • Yang N., Qi H., Wong M.M., Wu R.S., Kong R.Y. Prevalence and diversity of norovirus genogroups I and II in Hong Kong marine waters and detection by real-time PCR. Mar Pollut Bull 2012, 64:164-168.
    • (2012) Mar Pollut Bull , vol.64 , pp. 164-168
    • Yang, N.1    Qi, H.2    Wong, M.M.3    Wu, R.S.4    Kong, R.Y.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.