-
1
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel DP, (2004) MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
2
-
-
77955902024
-
The widespread regulation of microRNA biogenesis, function and decay
-
Krol J, Loedige I, Filipowicz W, (2010) The widespread regulation of microRNA biogenesis, function and decay. Nat Rev Genet 11: 597-610.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 597-610
-
-
Krol, J.1
Loedige, I.2
Filipowicz, W.3
-
3
-
-
33645124258
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
-
Giraldez AJ, Mishima Y, Rihel J, Grocock RJ, van DS, et al. (2006) Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 312: 75-79.
-
(2006)
Science
, vol.312
, pp. 75-79
-
-
Giraldez, A.J.1
Mishima, Y.2
Rihel, J.3
Grocock, R.J.4
van, D.S.5
-
4
-
-
33645119514
-
MicroRNAs direct rapid deadenylation of mRNA
-
Wu L, Fan J, Belasco JG, (2006) MicroRNAs direct rapid deadenylation of mRNA. Proc Natl Acad Sci U S A 103: 4034-4039.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 4034-4039
-
-
Wu, L.1
Fan, J.2
Belasco, J.G.3
-
5
-
-
32444436121
-
Short RNAs repress translation after initiation in mammalian cells
-
Petersen CP, Bordeleau ME, Pelletier J, Sharp PA, (2006) Short RNAs repress translation after initiation in mammalian cells. Mol Cell 21: 533-542.
-
(2006)
Mol Cell
, vol.21
, pp. 533-542
-
-
Petersen, C.P.1
Bordeleau, M.E.2
Pelletier, J.3
Sharp, P.A.4
-
6
-
-
28044457883
-
MicroRNAs control translation initiation by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function
-
Humphreys DT, Westman BJ, Martin DI, Preiss T, (2005) MicroRNAs control translation initiation by inhibiting eukaryotic initiation factor 4E/cap and poly(A) tail function. Proc Natl Acad Sci U S A 102: 16961-16966.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 16961-16966
-
-
Humphreys, D.T.1
Westman, B.J.2
Martin, D.I.3
Preiss, T.4
-
7
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman RC, Farh KK, Burge CB, Bartel DP, (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res 19: 92-105.
-
(2009)
Genome Res
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
8
-
-
33748302836
-
Augmentation of tumor angiogenesis by a Myc-activated microRNA cluster
-
Dews M, Homayouni A, Yu D, Murphy D, Sevignani C, et al. (2006) Augmentation of tumor angiogenesis by a Myc-activated microRNA cluster. Nat Genet 38: 1060-1065.
-
(2006)
Nat Genet
, vol.38
, pp. 1060-1065
-
-
Dews, M.1
Homayouni, A.2
Yu, D.3
Murphy, D.4
Sevignani, C.5
-
9
-
-
79952289884
-
A curated database of miRNA mediated feed-forward loops involving MYC as master regulator
-
El BM, Cora D, Bosia C, Osella M, Caselle M, (2011) A curated database of miRNA mediated feed-forward loops involving MYC as master regulator. PLoS One 6: e14742.
-
(2011)
PLoS One
, vol.6
-
-
El, B.M.1
Cora, D.2
Bosia, C.3
Osella, M.4
Caselle, M.5
-
10
-
-
35748961986
-
p53 enters the microRNA world
-
Hermeking H, (2007) p53 enters the microRNA world. Cancer Cell 12: 414-418.
-
(2007)
Cancer Cell
, vol.12
, pp. 414-418
-
-
Hermeking, H.1
-
11
-
-
74249123570
-
The miR-34 family in cancer and apoptosis
-
Hermeking H, (2010) The miR-34 family in cancer and apoptosis. Cell Death Differ 17: 193-199.
-
(2010)
Cell Death Differ
, vol.17
, pp. 193-199
-
-
Hermeking, H.1
-
12
-
-
77952041735
-
Non-coding RNAs: identification of cancer-associated microRNAs by gene profiling
-
Ferdin J, Kunej T, Calin GA, (2010) Non-coding RNAs: identification of cancer-associated microRNAs by gene profiling. Technol Cancer Res Treat 9: 123-138.
-
(2010)
Technol Cancer Res Treat
, vol.9
, pp. 123-138
-
-
Ferdin, J.1
Kunej, T.2
Calin, G.A.3
-
13
-
-
58249088751
-
MicroRNAs: target recognition and regulatory functions
-
Bartel DP, (2009) MicroRNAs: target recognition and regulatory functions. Cell 136: 215-233.
-
(2009)
Cell
, vol.136
, pp. 215-233
-
-
Bartel, D.P.1
-
14
-
-
38149042783
-
Programmed cell death 4 (PDCD4) is an important functional target of the microRNA miR-21 in breast cancer cells
-
Frankel LB, Christoffersen NR, Jacobsen A, Lindow M, Krogh A, et al. (2008) Programmed cell death 4 (PDCD4) is an important functional target of the microRNA miR-21 in breast cancer cells. J Biol Chem 283: 1026-1033.
-
(2008)
J Biol Chem
, vol.283
, pp. 1026-1033
-
-
Frankel, L.B.1
Christoffersen, N.R.2
Jacobsen, A.3
Lindow, M.4
Krogh, A.5
-
15
-
-
79954993788
-
MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action
-
Wen J, Parker BJ, Jacobsen A, Krogh A, (2011) MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action. RNA 17: 820-834.
-
(2011)
RNA
, vol.17
, pp. 820-834
-
-
Wen, J.1
Parker, B.J.2
Jacobsen, A.3
Krogh, A.4
-
16
-
-
80052403569
-
Experimental Identification of MicroRNA Targets by Immunoprecipitation of Argonaute Protein Complexes
-
Beitzinger M, Meister G, (2011) Experimental Identification of MicroRNA Targets by Immunoprecipitation of Argonaute Protein Complexes. Methods Mol Biol 732 153-167: 153-167.
-
(2011)
Methods Mol Biol 732
, vol.153-167
, pp. 153-167
-
-
Beitzinger, M.1
Meister, G.2
-
17
-
-
67749132423
-
Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps
-
Chi SW, Zang JB, Mele A, Darnell RB, (2009) Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps. Nature 460: 479-486.
-
(2009)
Nature
, vol.460
, pp. 479-486
-
-
Chi, S.W.1
Zang, J.B.2
Mele, A.3
Darnell, R.B.4
-
18
-
-
77950920903
-
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, et al. (2010) Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141: 129-141.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
-
19
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H, Ingolia NT, Weissman JS, Bartel DP, (2010) Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 466: 835-840.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
20
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D, Villen J, Shin C, Camargo FD, Gygi SP, et al. (2008) The impact of microRNAs on protein output. Nature 455: 64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
-
21
-
-
79955410765
-
Systematic proteome analysis identifies transcription factor YY1 as a direct target of miR-34a
-
Chen QR, Yu LR, Tsang P, Wei JS, Song YK, et al. (2011) Systematic proteome analysis identifies transcription factor YY1 as a direct target of miR-34a. J Proteome Res 10: 479-487.
-
(2011)
J Proteome Res
, vol.10
, pp. 479-487
-
-
Chen, Q.R.1
Yu, L.R.2
Tsang, P.3
Wei, J.S.4
Song, Y.K.5
-
22
-
-
33750000660
-
Identification of miRNA targets with stable isotope labeling by amino acids in cell culture
-
Vinther J, Hedegaard MM, Gardner PP, Andersen JS, Arctander P, (2006) Identification of miRNA targets with stable isotope labeling by amino acids in cell culture. Nucleic Acids Res 34: e107.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Vinther, J.1
Hedegaard, M.M.2
Gardner, P.P.3
Andersen, J.S.4
Arctander, P.5
-
23
-
-
79951742026
-
Global identification of miR-373-regulated genes in breast cancer by quantitative proteomics
-
Yan GR, Xu SH, Tan ZL, Liu L, He QY, (2011) Global identification of miR-373-regulated genes in breast cancer by quantitative proteomics. Proteomics 11: 912-920.
-
(2011)
Proteomics
, vol.11
, pp. 912-920
-
-
Yan, G.R.1
Xu, S.H.2
Tan, Z.L.3
Liu, L.4
He, Q.Y.5
-
24
-
-
77956550890
-
Identifying targets of miR-143 using a SILAC-based proteomic approach
-
Yang Y, Chaerkady R, Kandasamy K, Huang TC, Selvan LD, et al. (2010) Identifying targets of miR-143 using a SILAC-based proteomic approach. Mol Biosyst 6: 1873-1882.
-
(2010)
Mol Biosyst
, vol.6
, pp. 1873-1882
-
-
Yang, Y.1
Chaerkady, R.2
Kandasamy, K.3
Huang, T.C.4
Selvan, L.D.5
-
25
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, et al. (2008) Widespread changes in protein synthesis induced by microRNAs. Nature 455: 58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
-
26
-
-
63049092022
-
Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach
-
Yang Y, Chaerkady R, Beer MA, Mendell JT, Pandey A, (2009) Identification of miR-21 targets in breast cancer cells using a quantitative proteomic approach. Proteomics 9: 1374-1384.
-
(2009)
Proteomics
, vol.9
, pp. 1374-1384
-
-
Yang, Y.1
Chaerkady, R.2
Beer, M.A.3
Mendell, J.T.4
Pandey, A.5
-
27
-
-
34249812122
-
MicroRNA-34a functions as a potential tumor suppressor by inducing apoptosis in neuroblastoma cells
-
Welch C, Chen Y, Stallings RL, (2007) MicroRNA-34a functions as a potential tumor suppressor by inducing apoptosis in neuroblastoma cells. Oncogene 26: 5017-5022.
-
(2007)
Oncogene
, vol.26
, pp. 5017-5022
-
-
Welch, C.1
Chen, Y.2
Stallings, R.L.3
-
28
-
-
34249817549
-
Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis
-
Chang TC, Wentzel EA, Kent OA, Ramachandran K, Mullendore M, (2007) Transactivation of miR-34a by p53 broadly influences gene expression and promotes apoptosis. Mol Cell 26: 745-752.
-
(2007)
Mol Cell
, vol.26
, pp. 745-752
-
-
Chang, T.C.1
Wentzel, E.A.2
Kent, O.A.3
Ramachandran, K.4
Mullendore, M.5
-
29
-
-
34547458550
-
p53-mediated activation of miRNA34 candidate tumor-suppressor genes
-
Bommer GT, Gerin I, Feng Y, Kaczorowski AJ, Kuick R, et al. (2007) p53-mediated activation of miRNA34 candidate tumor-suppressor genes. Curr Biol 17: 1298-1307.
-
(2007)
Curr Biol
, vol.17
, pp. 1298-1307
-
-
Bommer, G.T.1
Gerin, I.2
Feng, Y.3
Kaczorowski, A.J.4
Kuick, R.5
-
30
-
-
34250851115
-
A microRNA component of the p53 tumour suppressor network
-
He L, He X, Lim LP, de SE, Xuan Z, et al. (2007) A microRNA component of the p53 tumour suppressor network. Nature 447: 1130-1134.
-
(2007)
Nature
, vol.447
, pp. 1130-1134
-
-
He, L.1
He, X.2
Lim, L.P.3
de, S.E.4
Xuan, Z.5
-
31
-
-
34249822779
-
Transcriptional activation of miR-34a contributes to p53-mediated apoptosis
-
Raver-Shapira N, Marciano E, Meiri E, Spector Y, Rosenfeld N, et al. (2007) Transcriptional activation of miR-34a contributes to p53-mediated apoptosis. Mol Cell 26: 731-743.
-
(2007)
Mol Cell
, vol.26
, pp. 731-743
-
-
Raver-Shapira, N.1
Marciano, E.2
Meiri, E.3
Spector, Y.4
Rosenfeld, N.5
-
32
-
-
34250868124
-
Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest
-
Tarasov V, Jung P, Verdoodt B, Lodygin D, Epanchintsev A, et al. (2007) Differential regulation of microRNAs by p53 revealed by massively parallel sequencing: miR-34a is a p53 target that induces apoptosis and G1-arrest. Cell Cycle 6: 1586-1593.
-
(2007)
Cell Cycle
, vol.6
, pp. 1586-1593
-
-
Tarasov, V.1
Jung, P.2
Verdoodt, B.3
Lodygin, D.4
Epanchintsev, A.5
-
33
-
-
78651511540
-
miR-29b is activated during neuronal maturation and targets BH3-only genes to restrict apoptosis
-
Kole AJ, Swahari V, Hammond SM, Deshmukh M, (2011) miR-29b is activated during neuronal maturation and targets BH3-only genes to restrict apoptosis. Genes Dev 25: 125-130.
-
(2011)
Genes Dev
, vol.25
, pp. 125-130
-
-
Kole, A.J.1
Swahari, V.2
Hammond, S.M.3
Deshmukh, M.4
-
34
-
-
58149215802
-
miR-29 miRNAs activate p53 by targeting p85 alpha and CDC42
-
Park SY, Lee JH, Ha M, Nam JW, Kim VN, (2009) miR-29 miRNAs activate p53 by targeting p85 alpha and CDC42. Nat Struct Mol Biol 16: 23-29.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 23-29
-
-
Park, S.Y.1
Lee, J.H.2
Ha, M.3
Nam, J.W.4
Kim, V.N.5
-
35
-
-
73949118737
-
MicroRNA 29b functions in acute myeloid leukemia
-
Garzon R, Heaphy CE, Havelange V, Fabbri M, Volinia S, et al. (2009) MicroRNA 29b functions in acute myeloid leukemia. Blood 114: 5331-5341.
-
(2009)
Blood
, vol.114
, pp. 5331-5341
-
-
Garzon, R.1
Heaphy, C.E.2
Havelange, V.3
Fabbri, M.4
Volinia, S.5
-
36
-
-
77950602604
-
Effects of microRNA-29 on apoptosis, tumorigenicity, and prognosis of hepatocellular carcinoma
-
Xiong Y, Fang JH, Yun JP, Yang J, Zhang Y, et al. (2010) Effects of microRNA-29 on apoptosis, tumorigenicity, and prognosis of hepatocellular carcinoma. Hepatology 51: 836-845.
-
(2010)
Hepatology
, vol.51
, pp. 836-845
-
-
Xiong, Y.1
Fang, J.H.2
Yun, J.P.3
Yang, J.4
Zhang, Y.5
-
37
-
-
44049108170
-
Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression
-
Hebert SS, Horre K, Nicolai L, Papadopoulou AS, Mandemakers W, et al. (2008) Loss of microRNA cluster miR-29a/b-1 in sporadic Alzheimer's disease correlates with increased BACE1/beta-secretase expression. Proc Natl Acad Sci U S A 105: 6415-6420.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 6415-6420
-
-
Hebert, S.S.1
Horre, K.2
Nicolai, L.3
Papadopoulou, A.S.4
Mandemakers, W.5
-
38
-
-
14244269224
-
Oligomeric states of the voltage-dependent anion channel and cytochrome c release from mitochondria
-
Zalk R, Israelson A, Garty ES, Zoulay-Zohar H, Shoshan-Barmatz V, (2005) Oligomeric states of the voltage-dependent anion channel and cytochrome c release from mitochondria. Biochem J 386: 73-83.
-
(2005)
Biochem J
, vol.386
, pp. 73-83
-
-
Zalk, R.1
Israelson, A.2
Garty, E.S.3
Zoulay-Zohar, H.4
Shoshan-Barmatz, V.5
-
40
-
-
77953808124
-
Characterization of human VDAC isoforms: a peculiar function for VDAC3?
-
De P, V, Guarino F, Guarnera A, Messina A, Reina S, et al. (2010) Characterization of human VDAC isoforms: a peculiar function for VDAC3? Biochim Biophys Acta 1797: 1268-1275.
-
(2010)
Biochim Biophys Acta
, vol.1797
, pp. 1268-1275
-
-
de, P.V.1
Guarino, F.2
Guarnera, A.3
Messina, A.4
Reina, S.5
-
42
-
-
27144558619
-
Targets for human encoded microRNAs in HIV genes
-
Hariharan M, Scaria V, Pillai B, Brahmachari SK, (2005) Targets for human encoded microRNAs in HIV genes. Biochem Biophys Res Commun 337: 1214-1218.
-
(2005)
Biochem Biophys Res Commun
, vol.337
, pp. 1214-1218
-
-
Hariharan, M.1
Scaria, V.2
Pillai, B.3
Brahmachari, S.K.4
-
44
-
-
58549114916
-
miR-34a inhibits migration and invasion by down-regulation of c-Met expression in human hepatocellular carcinoma cells
-
Li N, Fu H, Tie Y, Hu Z, Kong W, et al. (2009) miR-34a inhibits migration and invasion by down-regulation of c-Met expression in human hepatocellular carcinoma cells. Cancer Lett 275: 44-53.
-
(2009)
Cancer Lett
, vol.275
, pp. 44-53
-
-
Li, N.1
Fu, H.2
Tie, Y.3
Hu, Z.4
Kong, W.5
-
45
-
-
80051613002
-
Genome-wide characterization of miR-34a induced changes in protein and mRNA expression by a combined pulsed SILAC and micro-array analysis
-
Kaller M, Liffers ST, Oeljeklaus S, Kuhlmann K, Roh S, et al. (2011) Genome-wide characterization of miR-34a induced changes in protein and mRNA expression by a combined pulsed SILAC and micro-array analysis. Mol Cell Proteomics.
-
(2011)
Mol Cell Proteomics
-
-
Kaller, M.1
Liffers, S.T.2
Oeljeklaus, S.3
Kuhlmann, K.4
Roh, S.5
-
46
-
-
79955983466
-
Modeling microRNA-mRNA interactions using PLS regression in human colon cancer
-
Li X, Gill R, Cooper NG, Yoo JK, Datta S, (2011) Modeling microRNA-mRNA interactions using PLS regression in human colon cancer. BMC Med Genomics %19;4 44: 44.
-
(2011)
BMC Med Genomics %19;4
, vol.44
, pp. 44
-
-
Li, X.1
Gill, R.2
Cooper, N.G.3
Yoo, J.K.4
Datta, S.5
-
47
-
-
76749168620
-
Frequent downregulation of miR-34 family in human ovarian cancers
-
Corney DC, Hwang CI, Matoso A, Vogt M, Flesken-Nikitin A, et al. (2010) Frequent downregulation of miR-34 family in human ovarian cancers. Clin Cancer Res 16: 1119-1128.
-
(2010)
Clin Cancer Res
, vol.16
, pp. 1119-1128
-
-
Corney, D.C.1
Hwang, C.I.2
Matoso, A.3
Vogt, M.4
Flesken-Nikitin, A.5
-
48
-
-
77949518018
-
microRNA-29a induces aberrant self-renewal capacity in hematopoietic progenitors, biased myeloid development, and acute myeloid leukemia
-
Han YC, Park CY, Bhagat G, Zhang J, Wang Y, et al. (2010) microRNA-29a induces aberrant self-renewal capacity in hematopoietic progenitors, biased myeloid development, and acute myeloid leukemia. J Exp Med 207: 475-489.
-
(2010)
J Exp Med
, vol.207
, pp. 475-489
-
-
Han, Y.C.1
Park, C.Y.2
Bhagat, G.3
Zhang, J.4
Wang, Y.5
-
49
-
-
35649020283
-
MicroRNA-29 family reverts aberrant methylation in lung cancer by targeting DNA methyltransferases 3A and 3B
-
Fabbri M, Garzon R, Cimmino A, Liu Z, Zanesi N, et al. (2007) MicroRNA-29 family reverts aberrant methylation in lung cancer by targeting DNA methyltransferases 3A and 3B. Proc Natl Acad Sci U S A 104: 15805-15810.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, pp. 15805-15810
-
-
Fabbri, M.1
Garzon, R.2
Cimmino, A.3
Liu, Z.4
Zanesi, N.5
-
50
-
-
84863483212
-
Regulation of BACE1 by miR-29a/b in a cellular model of Spinocerebellar ataxia 17
-
Roshan R, Ghosh T, Gadgil M, Pillai B (2012) Regulation of BACE1 by miR-29a/b in a cellular model of Spinocerebellar ataxia 17. RNA Biol 9.
-
(2012)
RNA Biol
, pp. 9
-
-
Roshan, R.1
Ghosh, T.2
Gadgil, M.3
Pillai, B.4
-
51
-
-
77957665187
-
A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans
-
Jovanovic M, Reiter L, Picotti P, Lange V, Bogan E, et al. (2010) A quantitative targeted proteomics approach to validate predicted microRNA targets in C. elegans. Nat Methods 7: 837-842.
-
(2010)
Nat Methods
, vol.7
, pp. 837-842
-
-
Jovanovic, M.1
Reiter, L.2
Picotti, P.3
Lange, V.4
Bogan, E.5
-
52
-
-
56049121431
-
MicroRNA-mediated up-regulation of an alternatively polyadenylated variant of the mouse cytoplasmic {beta}-actin gene
-
Ghosh T, Soni K, Scaria V, Halimani M, Bhattacharjee C, et al. (2008) MicroRNA-mediated up-regulation of an alternatively polyadenylated variant of the mouse cytoplasmic {beta}-actin gene. Nucleic Acids Res 36: 6318-6332.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6318-6332
-
-
Ghosh, T.1
Soni, K.2
Scaria, V.3
Halimani, M.4
Bhattacharjee, C.5
-
53
-
-
61449173947
-
Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication
-
Ahluwalia JK, Khan SZ, Soni K, Rawat P, Gupta A, et al. (2008) Human cellular microRNA hsa-miR-29a interferes with viral nef protein expression and HIV-1 replication. Retrovirology 5 117: 117.
-
(2008)
Retrovirology
, vol.5
, Issue.117
, pp. 117
-
-
Ahluwalia, J.K.1
Khan, S.Z.2
Soni, K.3
Rawat, P.4
Gupta, A.5
-
54
-
-
4544280727
-
MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications
-
McDonald WH, Tabb DL, Sadygov RG, MacCoss MJ, Venable J, et al. (2004) MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. Rapid Commun Mass Spectrom 18: 2162-2168.
-
(2004)
Rapid Commun Mass Spectrom
, vol.18
, pp. 2162-2168
-
-
McDonald, W.H.1
Tabb, D.L.2
Sadygov, R.G.3
MacCoss, M.J.4
Venable, J.5
-
55
-
-
35648943746
-
ProLuCID, a fast and sensitive tandem mass spectra-based protein identification program
-
Epub;%2006 Oct.: S174
-
Xu T, Venable JD, Park SK, Cociorva D, Lu B, et al. (2006) ProLuCID, a fast and sensitive tandem mass spectra-based protein identification program. Molecular and Cellular Proteomics 5: S174 Epub;%2006 Oct.: S174.
-
(2006)
Molecular and Cellular Proteomics
, vol.5
-
-
Xu, T.1
Venable, J.D.2
Park, S.K.3
Cociorva, D.4
Lu, B.5
-
56
-
-
0037277179
-
Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome
-
Peng J, Elias JE, Thoreen CC, Licklider LJ, Gygi SP, (2003) Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome. J Proteome Res 2: 43-50.
-
(2003)
J Proteome Res
, vol.2
, pp. 43-50
-
-
Peng, J.1
Elias, J.E.2
Thoreen, C.C.3
Licklider, L.J.4
Gygi, S.P.5
-
57
-
-
0036393898
-
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics
-
Tabb DL, McDonald WH, Yates JR III, (2002) DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics. J Proteome Res 1: 21-26.
-
(2002)
J Proteome Res
, vol.1
, pp. 21-26
-
-
Tabb, D.L.1
McDonald, W.H.2
Yates III, J.R.3
-
58
-
-
43349089502
-
Validation of tandem mass spectrometry database search results using DTASelect
-
Unit 13.4.: Unit
-
Cociorva D, Tabb L, Yates JR (2007) Validation of tandem mass spectrometry database search results using DTASelect. Curr Protoc Bioinformatics Chapter 13:Unit 13.4.: Unit.
-
(2007)
Curr Protoc Bioinformatics Chapter
, vol.13
-
-
Cociorva, D.1
Tabb, L.2
Yates, J.R.3
-
59
-
-
0029644596
-
Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database
-
Yates JR III, Eng JK, McCormack AL, Schieltz D, (1995) Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database. Anal Chem 67: 1426-1436.
-
(1995)
Anal Chem
, vol.67
, pp. 1426-1436
-
-
Yates III, J.R.1
Eng, J.K.2
McCormack, A.L.3
Schieltz, D.4
-
60
-
-
41549117597
-
A quantitative analysis software tool for mass spectrometry-based proteomics
-
Park SK, Venable JD, Xu T, Yates JR III, (2008) A quantitative analysis software tool for mass spectrometry-based proteomics. Nat Methods 5: 319-322.
-
(2008)
Nat Methods
, vol.5
, pp. 319-322
-
-
Park, S.K.1
Venable, J.D.2
Xu, T.3
Yates III, J.R.4
-
63
-
-
58149186499
-
miRecords: an integrated resource for microRNA-target interactions
-
Xiao F, Zuo Z, Cai G, Kang S, Gao X, et al. (2009) miRecords: an integrated resource for microRNA-target interactions. Nucleic Acids Res 37: D105-D110.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Xiao, F.1
Zuo, Z.2
Cai, G.3
Kang, S.4
Gao, X.5
-
64
-
-
34547571030
-
g:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments
-
Reimand J, Kull M, Peterson H, Hansen J, Vilo J, (2007) g:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Res 35: W193-W200.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Reimand, J.1
Kull, M.2
Peterson, H.3
Hansen, J.4
Vilo, J.5
-
65
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang dW, Sherman BT, Lempicki RA, (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4: 44-57.
-
(2009)
Nat Protoc
, vol.4
, pp. 44-57
-
-
Huang, d.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
66
-
-
58549112996
-
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
-
Huang dW, Sherman BT, Lempicki RA, (2009) Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37: 1-13.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 1-13
-
-
Huang, d.W.1
Sherman, B.T.2
Lempicki, R.A.3
|