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Volumn 223, Issue 7, 2012, Pages 4443-4457

Bioinformatic analyses of bacterial mercury ion (Hg 2+) transporters

Author keywords

Bacteria; Bioremediation; Hg 2+ channel; Protein superfamily; Transport

Indexed keywords

AMINO ACID SEQUENCE; BIOINFORMATIC ANALYSIS; GENERAL FUNCTIONS; GLOBAL ALIGNMENT; HELICAL SEGMENTS; ION UPTAKE; MERCURY ION; PHYLOGENETIC TREES; SINGLE WELL; STATISTICAL BIOINFORMATICS; TRANSMEMBRANES; TRANSPORT;

EID: 84865450557     PISSN: 00496979     EISSN: 15732932     Source Type: Journal    
DOI: 10.1007/s11270-012-1208-3     Document Type: Article
Times cited : (9)

References (32)
  • 3
    • 0038240633 scopus 로고    scopus 로고
    • Bacterial mercury resistance from atoms to ecosystems
    • DOI 10.1016/S0168-6445(03)00046-9
    • T Barkay SM Miller AO Summers 2003 Bacterial mercury resistance from atoms to ecosystems FEMS Microbiology Reviews 27 2-3 355 384 10.1016/S0168-6445(03)00046-9 1:CAS:528:DC%2BD3sXksVOlt7c%3D (Pubitemid 36700435)
    • (2003) FEMS Microbiology Reviews , vol.27 , Issue.2-3 , pp. 355-384
    • Barkay, T.1    Miller, S.M.2    Summers, A.O.3
  • 4
    • 0034063655 scopus 로고    scopus 로고
    • Ecological effects, transport, and fate of mercury: A general review
    • DOI 10.1016/S0045-6535(99)00283-0, PII S0045653599002830
    • DW Boening 2000 Ecological effects, transport, and fate of mercury: a general review Chemosphere 40 12 1335 1351 10.1016/S0045-6535(99)00283-0 1:CAS:528:DC%2BD3cXit1yru7k%3D (Pubitemid 30165651)
    • (2000) Chemosphere , vol.40 , Issue.12 , pp. 1335-1351
    • Boening, D.W.1
  • 6
    • 0034592821 scopus 로고    scopus 로고
    • Mercury modeling to predict contamination and bioaccumulation in aquatic ecosystems
    • 1:CAS:528:DC%2BD3cXis1Cgsr8%3D
    • MC Braga G Shaw JN Lester 2000 Mercury modeling to predict contamination and bioaccumulation in aquatic ecosystems Reviews of Environmental Contamination and Toxicology 164 69 92 1:CAS:528:DC%2BD3cXis1Cgsr8%3D
    • (2000) Reviews of Environmental Contamination and Toxicology , vol.164 , pp. 69-92
    • Braga, M.C.1    Shaw, G.2    Lester, J.N.3
  • 7
    • 78751624918 scopus 로고    scopus 로고
    • MRP2 and the handling of mercuric ions in rats exposed acutely to inorganic and organic species of mercury
    • 10.1016/j.taap.2010.11.015 1:CAS:528:DC%2BC3MXpsl2ntA%3D%3D
    • CC Bridges L Joshee RK Zalups 2011 MRP2 and the handling of mercuric ions in rats exposed acutely to inorganic and organic species of mercury Toxicology and Applied Pharmacology 251 1 50 58 10.1016/j.taap.2010.11.015 1:CAS:528:DC%2BC3MXpsl2ntA%3D%3D
    • (2011) Toxicology and Applied Pharmacology , vol.251 , Issue.1 , pp. 50-58
    • Bridges, C.C.1    Joshee, L.2    Zalups, R.K.3
  • 8
    • 8744259751 scopus 로고    scopus 로고
    • Reconstruction of ancestral protein sequences and its applications
    • DOI 10.1186/1471-2148-4-33
    • Cai, W., Pei, J., & Grishin, N. V. (2004). Reconstruction of ancestral protein sequences and its applications. BMC Evolutionary Biology, 4(33). doi: 10.1186/1471-2148-4-33 . (Pubitemid 39526778)
    • (2004) BMC Evolutionary Biology , vol.4 , pp. 33
    • Cai, W.1    Pei, J.2    Grishin, N.V.3
  • 9
    • 84863029391 scopus 로고    scopus 로고
    • Phylogenetic characterization of transport protein superfamilies: Superiority of SuperfamilyTree programs over those based on multiple alignments
    • Chen, J. S., Reddy, V., Chen, J. H., Shlykov, M. A., Zheng, W. H., Cho, J., et al. (2011). Phylogenetic characterization of transport protein superfamilies: superiority of SuperfamilyTree programs over those based on multiple alignments. Journal of Molecular Microbiology and Biotechnology, 21(3-4), 83-96.
    • (2011) Journal of Molecular Microbiology and Biotechnology , vol.21 , Issue.3-4 , pp. 83-96
    • Chen, J.S.1    Reddy, V.2    Chen, J.H.3    Shlykov, M.A.4    Zheng, W.H.5    Cho, J.6
  • 10
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • 10.1093/nar/12.1Part1.387 1:CAS:528:DyaL2cXot1eqtA%3D%3D
    • J Devereux P Haeberli O Smithies 1984 A comprehensive set of sequence analysis programs for the VAX Nucleic Acids Research 12 1 Pt 1 387 395 10.1093/nar/12.1Part1.387 1:CAS:528:DyaL2cXot1eqtA%3D%3D
    • (1984) Nucleic Acids Research , vol.12 , Issue.1 PART 1 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 12
    • 62849124027 scopus 로고    scopus 로고
    • The MerE protein encoded by transposon Tn21 is a broad mercury transporter in Escherichia coli
    • 10.1016/j.febslet.2009.02.039 1:CAS:528:DC%2BD1MXjslOqt7g%3D
    • M Kiyono Y Sone R Nakamura H Pan-Hou K Sakabe 2009 The MerE protein encoded by transposon Tn21 is a broad mercury transporter in Escherichia coli FEBS Letters 583 7 1127 1131 10.1016/j.febslet.2009.02.039 1:CAS:528: DC%2BD1MXjslOqt7g%3D
    • (2009) FEBS Letters , vol.583 , Issue.7 , pp. 1127-1131
    • Kiyono, M.1    Sone, Y.2    Nakamura, R.3    Pan-Hou, H.4    Sakabe, K.5
  • 13
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • DOI 10.1006/jmbi.2000.4315
    • A Krogh B Larsson G von Heijne EL Sonnhammer 2001 Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes Journal of Molecular Biology 305 3 567 580 10.1006/jmbi.2000. 4315 1:CAS:528:DC%2BD3MXisFCguw%3D%3D (Pubitemid 33032862)
    • (2001) Journal of Molecular Biology , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.L.4
  • 15
    • 0035072551 scopus 로고    scopus 로고
    • Clustering of highly homologous sequences to reduce the size of large protein databases
    • W Li L Jaroszewski A Godzik 2001 Clustering of highly homologous sequences to reduce the size of large protein databases Bioinformatics 17 3 282 283 10.1093/bioinformatics/17.3.282 1:CAS:528:DC%2BD3MXjsFSit7Y%3D (Pubitemid 32288218)
    • (2001) Bioinformatics , vol.17 , Issue.3 , pp. 282-283
    • Li, W.1    Jaroszewski, L.2    Godzik, A.3
  • 16
    • 0036169928 scopus 로고    scopus 로고
    • Tolerating some redundancy significantly speeds up clustering of large protein databases
    • W Li L Jaroszewski A Godzik 2002 Tolerating some redundancy significantly speeds up clustering of large protein databases Bioinformatics 18 1 77 82 10.1093/bioinformatics/18.1.77 1:CAS:528:DC%2BD38Xhs1elur0%3D (Pubitemid 34145034)
    • (2002) Bioinformatics , vol.18 , Issue.1 , pp. 77-82
    • Li, W.1    Jaroszewski, L.2    Godzik, A.3
  • 17
    • 82355185742 scopus 로고    scopus 로고
    • Bacterial mer operon-mediated detoxification of mercurial compounds: A short review
    • Mathema, V. B., Thakuri, B. C., & Sillanpaa, M. (2011). Bacterial mer operon-mediated detoxification of mercurial compounds: a short review. Archives of Microbiology, 193(12), 837-844.
    • (2011) Archives of Microbiology , vol.193 , Issue.12 , pp. 837-844
    • Mathema, V.B.1    Thakuri, B.C.2    Sillanpaa, M.3
  • 18
    • 0032580972 scopus 로고    scopus 로고
    • NMR solution structure of the oxidized form of MerP, a mercuric ion binding protein involved in bacterial mercuric ion resistance
    • DOI 10.1021/bi9803628
    • H Qian L Sahlman PO Eriksson C Hambraeus U Edlund I Sethson 1998 NMR solution structure of the oxidized form of MerP, a mercuric ion binding protein involved in bacterial mercuric ion resistance Biochemistry 37 26 9316 9322 10.1021/bi9803628 1:CAS:528:DyaK1cXjslWku7g%3D (Pubitemid 28307685)
    • (1998) Biochemistry , vol.37 , Issue.26 , pp. 9316-9322
    • Qian, H.1    Sahlman, L.2    Eriksson, P.-O.3    Hambraeus, C.4    Edlund, U.5    Sethson, I.6
  • 19
    • 0037783318 scopus 로고    scopus 로고
    • Tracing pathways of transport protein evolution
    • DOI 10.1046/j.1365-2958.2003.03499.x
    • MH Saier Jr 2003 Tracing pathways of transport protein evolution Molecular Microbiology 48 5 1145 1156 10.1046/j.1365-2958.2003.03499.x 1:CAS:528:DC%2BD3sXkvVektLk%3D (Pubitemid 36718212)
    • (2003) Molecular Microbiology , vol.48 , Issue.5 , pp. 1145-1156
    • Saier Jr., M.H.1
  • 20
    • 58149202169 scopus 로고    scopus 로고
    • The Transporter Classification Database: Recent advances. [Research Support, N.I.H., Extramural]
    • Saier, M. H., Jr., Yen, M. R., Noto, K., Tamang, D. G., & Elkan, C. (2009). The Transporter Classification Database: recent advances. [Research Support, N.I.H., Extramural]. Nucleic Acids Research, 37(Database issue), D274-278.
    • (2009) Nucleic Acids Research , vol.37 , Issue.DATABASE ISSUE
    • Saier Jr., M.H.1    Yen, M.R.2    Noto, K.3    Tamang, D.G.4    Elkan, C.5
  • 21
    • 41049115600 scopus 로고    scopus 로고
    • Evidence for direct interactions between the mercuric ion transporter (MerT) and mercuric reductase (MerA) from the Tn501 mer operon
    • DOI 10.1007/s10534-007-9097-4
    • M Schue KJ Glendinning JL Hobman NL Brown 2008 Evidence for direct interactions between the mercuric ion transporter (MerT) and mercuric reductase (MerA) from the Tn501 mer operon Biometals: an international journal on the role of metal ions in biology, biochemistry, and medicine 21 2 107 116 10.1007/s10534-007-9097-4 1:CAS:528:DC%2BD1cXjsFajsLc%3D (Pubitemid 351421978)
    • (2008) BioMetals , vol.21 , Issue.2 , pp. 107-116
    • Schue, M.1    Glendinning, K.J.2    Hobman, J.L.3    Brown, N.L.4
  • 22
    • 58149479229 scopus 로고    scopus 로고
    • Sequence and analysis of a plasmid-encoded mercury resistance operon from Mycobacterium marinum identifies MerH, a new mercuric ion transporter
    • 10.1128/JB.01063-08 1:CAS:528:DC%2BD1MXoslChsLc%3D
    • M Schue LG Dover GS Besra J Parkhill NL Brown 2009 Sequence and analysis of a plasmid-encoded mercury resistance operon from Mycobacterium marinum identifies MerH, a new mercuric ion transporter Journal of Bacteriology 191 1 439 444 10.1128/JB.01063-08 1:CAS:528:DC%2BD1MXoslChsLc%3D
    • (2009) Journal of Bacteriology , vol.191 , Issue.1 , pp. 439-444
    • Schue, M.1    Dover, L.G.2    Besra, G.S.3    Parkhill, J.4    Brown, N.L.5
  • 23
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Research 25 24 4876 4882 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 24
    • 0344822637 scopus 로고    scopus 로고
    • Differential sensitivities of MRP1-overexpressing lung tumor cells to cytotoxic metals
    • 10.1016/S0300-483X(99)00148-1 1:CAS:528:DC%2BD3cXhtVaiu70%3D
    • L Vernhet N Allain C Bardiau JP Anger O Fardel 2000 Differential sensitivities of MRP1-overexpressing lung tumor cells to cytotoxic metals Toxicology 142 2 127 134 10.1016/S0300-483X(99)00148-1 1:CAS:528: DC%2BD3cXhtVaiu70%3D
    • (2000) Toxicology , vol.142 , Issue.2 , pp. 127-134
    • Vernhet, L.1    Allain, N.2    Bardiau, C.3    Anger, J.P.4    Fardel, O.5
  • 25
    • 0034697083 scopus 로고    scopus 로고
    • MerF is a mercury transport protein: Different structures but a common mechanism for mercuric ion transporters?
    • DOI 10.1016/S0014-5793(00)01430-7, PII S0014579300014307
    • JR Wilson C Leang AP Morby JL Hobman NL Brown 2000 MerF is a mercury transport protein: different structures but a common mechanism for mercuric ion transporters? FEBS Letters 472 1 78 82 10.1016/S0014-5793(00)01430-7 1:CAS:528:DC%2BD3cXislarsL0%3D (Pubitemid 30224590)
    • (2000) FEBS Letters , vol.472 , Issue.1 , pp. 78-82
    • Wilson, J.R.1    Leang, C.2    Morby, A.P.3    Hobman, J.L.4    Brown, N.L.5
  • 26
    • 34248358597 scopus 로고    scopus 로고
    • Mercury transport in bacteria
    • DOI 10.1007/s11270-007-9334-z
    • A Yamaguchi DG Tamang MH Saier 2007 Mercury transport in bacteria Water, Air, and Soil Pollution 182 1-4 219 234 10.1007/s11270-007-9334-z 1:CAS:528:DC%2BD2sXltVyltbk%3D (Pubitemid 46742157)
    • (2007) Water, Air, and Soil Pollution , vol.182 , Issue.1-4 , pp. 219-234
    • Yamaguchi, A.1    Tamang, D.G.2    Saier Jr., M.H.3
  • 27
    • 70349258246 scopus 로고    scopus 로고
    • Bioinformatic analyses of transmembrane transport: Novel software for deducing protein phylogeny, topology, and evolution
    • 10.1159/000239667 1:CAS:528:DC%2BD1MXht12htL%2FJ
    • MR Yen J Choi MH Saier Jr 2009 Bioinformatic analyses of transmembrane transport: novel software for deducing protein phylogeny, topology, and evolution Journal of Molecular Microbiology and Biotechnology 17 4 163 176 10.1159/000239667 1:CAS:528:DC%2BD1MXht12htL%2FJ
    • (2009) Journal of Molecular Microbiology and Biotechnology , vol.17 , Issue.4 , pp. 163-176
    • Yen, M.R.1    Choi, J.2    Saier Jr., M.H.3
  • 28
    • 77954892583 scopus 로고    scopus 로고
    • Multidrug resistance: Phylogenetic characterization of superfamilies of secondary carriers that include drug exporters
    • 10.1007/978-1-60761-700-6-3 10.1007/978-1-60761-700-6-3 1:CAS:528:DC%2BC3cXos1CkurY%3D
    • MR Yen JS Chen JL Marquez EI Sun MH Saier 2010 Multidrug resistance: phylogenetic characterization of superfamilies of secondary carriers that include drug exporters Methods in Molecular Biology 637 47 64 10.1007/978-1-60761-700-6-3 10.1007/978-1-60761-700-6-3 1:CAS:528: DC%2BC3cXos1CkurY%3D
    • (2010) Methods in Molecular Biology , vol.637 , pp. 47-64
    • Yen, M.R.1    Chen, J.S.2    Marquez, J.L.3    Sun, E.I.4    Saier, M.H.5
  • 29
    • 0034874253 scopus 로고    scopus 로고
    • A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence
    • Y Zhai MH Saier Jr 2001 A web-based program (WHAT) for the simultaneous prediction of hydropathy, amphipathicity, secondary structure and transmembrane topology for a single protein sequence Journal of Molecular Microbiology and Biotechnology 3 4 501 502 1:CAS:528:DC%2BD3MXmsVartLs%3D (Pubitemid 32791409)
    • (2001) Journal of Molecular Microbiology and Biotechnology , vol.3 , Issue.4 , pp. 501-502
    • Zhai, Y.1    Saier Jr., M.H.2
  • 30
    • 0035087954 scopus 로고    scopus 로고
    • A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins
    • Y Zhai MH Saier Jr 2001 A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins Journal of Molecular Microbiology and Biotechnology 3 2 285 286 1:CAS:528:DC%2BD3MXisFSrt7Y%3D (Pubitemid 32257914)
    • (2001) Journal of Molecular Microbiology and Biotechnology , vol.3 , Issue.2 , pp. 285-286
    • Zhai, Y.1    Saier Jr., M.H.2
  • 31
    • 0035988281 scopus 로고    scopus 로고
    • A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins
    • Y Zhai MH Saier Jr 2002 A simple sensitive program for detecting internal repeats in sets of multiply aligned homologous proteins Journal of Molecular Microbiology and Biotechnology 4 4 375 377 1:CAS:528:DC%2BD38XlsVGks7w%3D (Pubitemid 34784700)
    • (2002) Journal of Molecular Microbiology and Biotechnology , vol.4 , Issue.4 , pp. 375-377
    • Zhai, Y.1    Saier Jr., M.H.2
  • 32
    • 0036132240 scopus 로고    scopus 로고
    • A web-based Tree View (TV) program for the visualization of phylogenetic trees
    • Y Zhai J Tchieu MH Saier Jr 2002 A web-based Tree View (TV) program for the visualization of phylogenetic trees Journal of Molecular Microbiology and Biotechnology 4 1 69 70 1:CAS:528:DC%2BD38Xlt1GrsQ%3D%3D (Pubitemid 33121214)
    • (2002) Journal of Molecular Microbiology and Biotechnology , vol.4 , Issue.1 , pp. 69-70
    • Zhai, Y.1    Tchieu, J.2    Saier Jr., M.H.3


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